Wall clock time and date at job start Tue Mar 31 2020 17:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86288 * 109.47337 * 2 1 4 4 C 1.86305 * 109.46807 * 119.99962 * 2 1 3 5 5 N 1.46900 * 109.47128 * 294.85461 * 4 2 1 6 6 C 1.46890 * 111.00212 * 85.80003 * 5 4 2 7 7 C 1.53241 * 109.34096 * 187.24936 * 6 5 4 8 8 N 1.47071 * 108.52222 * 306.17473 * 7 6 5 9 9 C 1.34779 * 120.88233 * 231.18304 * 8 7 6 10 10 O 1.21685 * 119.99992 * 5.28408 * 9 8 7 11 11 C 1.46378 * 120.00269 * 185.28938 * 9 8 7 12 12 H 1.07998 * 119.99849 * 354.98662 * 11 9 8 13 13 C 1.40048 * 119.99817 * 174.99653 * 11 9 8 14 14 N 1.30670 * 120.00368 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99605 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47142 * 269.99698 * 15 13 11 17 17 H 1.48504 * 109.47408 * 29.99655 * 15 13 11 18 18 H 1.48500 * 109.46926 * 149.99605 * 15 13 11 19 19 C 1.47083 * 118.23886 * 51.45537 * 8 7 6 20 20 C 1.46900 * 110.99528 * 210.10540 * 5 4 2 21 21 C 1.86800 * 109.46959 * 239.99783 * 2 1 3 22 22 C 1.38233 * 119.99800 * 149.73244 * 21 2 1 23 23 C 1.38239 * 120.00105 * 179.76752 * 22 21 2 24 24 C 1.38238 * 119.99468 * 0.50142 * 23 22 21 25 25 C 1.38240 * 120.00256 * 359.74930 * 24 23 22 26 26 C 1.38233 * 119.99952 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47187 * 300.00580 * 1 2 3 28 28 H 1.09006 * 109.46973 * 59.99874 * 1 2 3 29 29 H 1.08992 * 109.47559 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47139 * 184.97574 * 3 2 1 31 31 H 1.09002 * 109.47390 * 304.97950 * 3 2 1 32 32 H 1.09003 * 109.47423 * 64.97846 * 3 2 1 33 33 H 1.08993 * 109.46854 * 174.84862 * 4 2 1 34 34 H 1.09000 * 109.46804 * 54.85365 * 4 2 1 35 35 H 1.09008 * 109.49462 * 67.29466 * 6 5 4 36 36 H 1.08995 * 109.49843 * 307.21662 * 6 5 4 37 37 H 1.08994 * 109.63167 * 186.45775 * 7 6 5 38 38 H 1.09000 * 109.62349 * 65.88202 * 7 6 5 39 39 H 0.97000 * 119.99725 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.62787 * 68.24975 * 19 8 7 41 41 H 1.09006 * 109.62952 * 188.83342 * 19 8 7 42 42 H 1.09001 * 109.49362 * 292.70031 * 20 5 4 43 43 H 1.09000 * 109.49853 * 52.78320 * 20 5 4 44 44 H 1.07993 * 119.99882 * 359.97438 * 22 21 2 45 45 H 1.07992 * 120.00426 * 180.23305 * 23 22 21 46 46 H 1.07998 * 119.99707 * 179.72466 * 24 23 22 47 47 H 1.07998 * 119.99710 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.99770 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7563 0.0000 4 6 2.4839 -0.8783 1.5212 5 7 2.0983 -0.1178 2.7174 6 6 0.7452 -0.4812 3.1588 7 6 0.3118 0.4560 4.2910 8 7 1.3389 0.4238 5.3432 9 6 1.0048 0.1989 6.6294 10 8 -0.1443 -0.0760 6.9204 11 6 2.0242 0.2854 7.6763 12 1 3.0582 0.4491 7.4109 13 6 1.6587 0.1555 9.0220 14 7 0.4076 -0.0423 9.3431 15 14 2.9598 0.2652 10.3579 16 1 3.5028 -1.0894 10.6324 17 1 4.0584 1.1569 9.9070 18 1 2.3524 0.8153 11.5963 19 6 2.7397 0.6495 4.9555 20 6 3.0782 -0.3013 3.7964 21 6 2.4856 -0.8807 -1.5252 22 6 3.6908 -0.5116 -2.0928 23 6 4.1540 -1.1665 -3.2187 24 6 3.4068 -2.1835 -3.7830 25 6 2.1991 -2.5491 -3.2184 26 6 1.7387 -1.8980 -2.0892 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5704 1.7576 -0.0891 31 1 2.0497 2.2953 -0.8420 32 1 2.1954 2.2438 0.9312 33 1 3.5700 -0.9589 1.4763 34 1 2.0472 -1.8758 1.5684 35 1 0.7440 -1.5104 3.5181 36 1 0.0522 -0.3866 2.3229 37 1 -0.6414 0.1206 4.6994 38 1 0.2121 1.4715 3.9077 39 1 0.1545 -0.1318 10.2752 40 1 2.8688 1.6832 4.6348 41 1 3.3923 0.4420 5.8035 42 1 3.0445 -1.3329 4.1468 43 1 4.0771 -0.0761 3.4228 44 1 4.2722 0.2861 -1.6547 45 1 5.0973 -0.8807 -3.6599 46 1 3.7665 -2.6921 -4.6652 47 1 1.6152 -3.3433 -3.6595 48 1 0.7950 -2.1834 -1.6484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118368826.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:41 Heat of formation + Delta-G solvation = -51.270752 kcal Electronic energy + Delta-G solvation = -25933.639118 eV Core-core repulsion = 22416.739049 eV Total energy + Delta-G solvation = -3516.900069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.166 amu Computer time = 6.19 seconds Orbital eigenvalues (eV) -40.33647 -39.58105 -38.23278 -35.01959 -34.56183 -32.13158 -31.68993 -31.49567 -29.44570 -28.84787 -28.30856 -27.85494 -24.78945 -24.40892 -23.15418 -22.88363 -22.33008 -20.50231 -18.47645 -17.92858 -17.74749 -16.45109 -16.11045 -15.93664 -15.89848 -15.78263 -15.54014 -15.40861 -15.28275 -14.42315 -14.19794 -14.17571 -13.86822 -13.79987 -13.72356 -13.45504 -13.28772 -13.24819 -13.10570 -13.02667 -12.75750 -12.60795 -12.55694 -12.49011 -12.10883 -11.98926 -11.90484 -11.83283 -11.73435 -11.03797 -10.92642 -10.71344 -10.64514 -9.77747 -9.69909 -9.69179 -9.15949 -8.91290 -8.28812 -6.83363 0.45018 0.63008 1.39461 1.41017 1.56273 1.90233 2.04690 2.10036 2.23908 2.46364 2.74774 2.84820 3.07612 3.22927 3.61430 4.08499 4.18266 4.18601 4.25896 4.27615 4.36212 4.44317 4.48492 4.65999 4.69396 4.69997 4.79535 4.81758 4.88307 4.93477 4.98534 5.01760 5.02878 5.07606 5.14417 5.15897 5.26276 5.27997 5.38761 5.64034 5.67822 5.72719 5.74527 5.76693 5.85576 6.05595 6.12285 6.17779 6.27293 6.44629 6.88131 7.44646 8.47463 8.67868 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.002392 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.717185 B =11701.442905 C =12067.696840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.150 2.850 3 C -0.444 4.444 4 C -0.262 4.262 5 N -0.505 5.505 6 C 0.041 3.959 7 C 0.119 3.881 8 N -0.649 5.649 9 C 0.540 3.460 10 O -0.635 6.635 11 C -0.569 4.569 12 H 0.094 0.906 13 C 0.027 3.973 14 N -0.824 5.824 15 Si 0.996 3.004 16 H -0.263 1.263 17 H -0.245 1.245 18 H -0.274 1.274 19 C 0.123 3.877 20 C 0.042 3.958 21 C -0.381 4.381 22 C -0.101 4.101 23 C -0.147 4.147 24 C -0.125 4.125 25 C -0.149 4.149 26 C -0.105 4.105 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.010 0.990 36 H 0.115 0.885 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.273 0.727 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.012 0.988 43 H 0.108 0.892 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.130 0.870 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.064 -0.502 -25.825 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.334 2.666 3 C -0.553 4.553 4 C -0.433 4.433 5 N -0.230 5.230 6 C -0.088 4.088 7 C -0.005 4.005 8 N -0.385 5.385 9 C 0.346 3.654 10 O -0.523 6.523 11 C -0.605 4.605 12 H 0.112 0.888 13 C -0.188 4.188 14 N -0.454 5.454 15 Si 0.815 3.185 16 H -0.188 1.188 17 H -0.168 1.168 18 H -0.199 1.199 19 C 0.000 4.000 20 C -0.087 4.087 21 C -0.423 4.423 22 C -0.118 4.118 23 C -0.165 4.165 24 C -0.143 4.143 25 C -0.167 4.167 26 C -0.123 4.123 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.030 0.970 43 H 0.126 0.874 44 H 0.154 0.846 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.148 0.852 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.347 -0.252 -25.683 27.007 hybrid contribution 0.121 -1.301 1.069 1.688 sum 8.469 -1.552 -24.614 26.076 Atomic orbital electron populations 1.26416 1.21243 1.04678 1.04884 0.76799 0.65538 0.65343 0.58905 1.26058 1.06344 1.18415 1.04456 1.27734 1.06330 1.02559 1.06632 1.62225 1.01025 1.55053 1.04651 1.22682 0.92374 0.95638 0.98064 1.21363 0.92031 0.99412 0.87670 1.48134 1.07667 1.76224 1.06518 1.18685 0.88580 0.76251 0.81895 1.90528 1.23894 1.55580 1.82270 1.21501 0.95163 1.52998 0.90823 0.88846 1.27018 0.98086 0.91294 1.02376 1.70199 1.19915 1.35984 1.19255 0.85046 0.77843 0.79617 0.75973 1.18791 1.16848 1.19851 1.21791 0.82572 0.98910 0.96774 1.22754 0.97224 0.96681 0.92055 1.27620 0.98927 1.03151 1.12557 1.21422 0.95992 0.99024 0.95410 1.21553 1.00657 0.97074 0.97184 1.21482 0.95081 0.97488 1.00206 1.21526 0.97148 1.00810 0.97193 1.21392 0.99852 0.95464 0.95573 0.90861 0.90251 0.91045 0.90797 0.91051 0.91023 0.89489 0.94289 0.97179 0.86725 0.92922 0.91417 0.91676 0.91390 0.89999 0.96982 0.87407 0.84602 0.84853 0.84889 0.85192 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -7.37 7.62 113.37 0.86 -6.50 16 2 Si 1.15 16.92 10.94 68.60 0.75 17.67 16 3 C -0.44 -6.79 8.57 113.37 0.97 -5.82 16 4 C -0.26 -5.41 4.38 127.69 0.56 -4.85 16 5 N -0.51 -13.69 3.98 -687.25 -2.74 -16.42 16 6 C 0.04 1.31 5.28 86.39 0.46 1.77 16 7 C 0.12 4.84 6.61 86.35 0.57 5.41 16 8 N -0.65 -30.71 3.00 -822.14 -2.47 -33.18 16 9 C 0.54 32.31 7.63 86.36 0.66 32.97 16 10 O -0.64 -43.84 14.49 -4.30 -0.06 -43.91 16 11 C -0.57 -32.58 8.86 24.83 0.22 -32.36 16 12 H 0.09 4.76 5.74 -2.91 -0.02 4.75 16 13 C 0.03 1.53 5.50 85.30 0.47 1.99 16 14 N -0.82 -51.33 11.84 21.84 0.26 -51.07 16 15 Si 1.00 41.27 29.56 68.60 2.03 43.29 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 19 C 0.12 4.57 6.50 86.50 0.56 5.13 16 20 C 0.04 1.26 5.55 86.54 0.48 1.74 16 21 C -0.38 -6.07 4.59 22.27 0.10 -5.96 16 22 C -0.10 -1.56 9.29 22.27 0.21 -1.35 16 23 C -0.15 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.12 -1.89 10.05 22.27 0.22 -1.66 16 25 C -0.15 -2.36 10.05 22.27 0.22 -2.14 16 26 C -0.10 -1.73 9.29 22.27 0.21 -1.52 16 27 H 0.07 1.31 6.26 -2.39 -0.01 1.29 16 28 H 0.08 1.10 7.96 -2.38 -0.02 1.08 16 29 H 0.07 1.06 7.68 -2.39 -0.02 1.04 16 30 H 0.07 0.99 7.47 -2.38 -0.02 0.97 16 31 H 0.07 0.97 7.96 -2.39 -0.02 0.95 16 32 H 0.07 1.31 7.96 -2.39 -0.02 1.29 16 33 H 0.09 1.62 7.43 -2.39 -0.02 1.60 16 34 H 0.04 0.85 7.67 -2.39 -0.02 0.84 16 35 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 36 H 0.11 2.89 4.61 -2.39 -0.01 2.88 16 37 H 0.05 2.46 7.04 -2.39 -0.02 2.45 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 40 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.08 3.18 5.46 -2.38 -0.01 3.16 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.11 2.53 7.87 -2.39 -0.02 2.51 16 44 H 0.14 1.57 7.24 -2.91 -0.02 1.55 16 45 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 47 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 48 H 0.13 1.74 7.43 -2.91 -0.02 1.72 16 Total: -1.00 -80.46 385.75 5.71 -74.75 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.94 Total: 24.00 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 7.00 Total: -15.14 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -4.95 Total: -100.67 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.06 Total: -43.91 kcal Atomic # 14 Polarization: 58.18 SS G_CDS: 2.78 Total: 60.96 kcal Total: -80.46 5.71 -74.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118368826.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.484 kcal (2) G-P(sol) polarization free energy of solvation -80.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.19 seconds