Wall clock time and date at job start Tue Mar 31 2020 18:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99794 * 2 1 4 4 N 1.46505 * 109.47062 * 123.50509 * 3 2 1 5 5 C 1.36739 * 127.14096 * 88.76804 * 4 3 2 6 6 C 1.50697 * 126.34174 * 359.97438 * 5 4 3 7 7 C 1.50701 * 109.47527 * 89.99934 * 6 5 4 8 8 N 1.30275 * 126.28247 * 89.68699 * 7 6 5 9 9 N 1.28665 * 109.38085 * 179.83284 * 8 7 6 10 10 C 1.30282 * 109.38007 * 0.43903 * 9 8 7 11 11 C 1.50700 * 126.28030 * 179.73584 * 10 9 8 12 12 O 1.34360 * 126.28099 * 270.00287 * 7 6 5 13 13 N 1.30286 * 107.30770 * 180.24112 * 5 4 3 14 14 N 1.28532 * 110.05504 * 359.56333 * 13 5 4 15 15 C 1.31221 * 109.85853 * 0.44773 * 14 13 5 16 16 N 1.38578 * 126.47178 * 179.69605 * 15 14 13 17 17 C 1.46899 * 110.99954 * 306.20025 * 16 15 14 18 18 C 1.46899 * 110.99909 * 70.15659 * 16 15 14 19 19 H 1.08997 * 109.47240 * 55.00223 * 18 16 15 20 20 C 1.52996 * 109.47229 * 294.99467 * 18 16 15 21 21 C 1.50703 * 109.47097 * 174.99958 * 18 16 15 22 22 H 1.07998 * 119.99969 * 359.97438 * 21 18 16 23 23 C 1.37874 * 120.00227 * 180.02562 * 21 18 16 24 24 N 1.31518 * 119.99995 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 120.00088 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47166 * 119.99372 * 25 23 21 28 28 H 1.48497 * 109.46839 * 239.99284 * 25 23 21 29 29 H 1.07996 * 120.00410 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99456 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00152 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46963 * 3.50841 * 3 2 1 33 33 H 1.08997 * 109.47187 * 243.50313 * 3 2 1 34 34 H 1.09000 * 109.47195 * 209.99972 * 6 5 4 35 35 H 1.09001 * 109.47269 * 329.99290 * 6 5 4 36 36 H 1.08995 * 109.46784 * 269.99624 * 11 10 9 37 37 H 1.08993 * 109.47407 * 29.99964 * 11 10 9 38 38 H 1.09003 * 109.46916 * 150.00384 * 11 10 9 39 39 H 1.08996 * 109.47069 * 54.43941 * 17 16 15 40 40 H 1.09002 * 109.47143 * 174.43865 * 17 16 15 41 41 H 1.09004 * 109.47296 * 294.43586 * 17 16 15 42 42 H 1.09004 * 109.47416 * 180.02562 * 20 18 16 43 43 H 1.08997 * 109.47627 * 300.00519 * 20 18 16 44 44 H 1.09007 * 109.47130 * 60.00372 * 20 18 16 45 45 H 0.96991 * 120.00178 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9680 1.3468 1.1518 5 6 4.2573 0.8947 1.2057 6 6 5.0260 0.2516 0.0804 7 6 5.7476 1.3148 -0.7071 8 7 6.9498 1.7614 -0.4781 9 7 7.2437 2.6620 -1.3486 10 6 6.2355 2.8274 -2.1570 11 6 6.1683 3.7917 -3.3131 12 8 5.2668 1.9803 -1.7707 13 7 4.6961 1.1178 2.4121 14 7 3.7818 1.6841 3.1159 15 6 2.6986 1.8454 2.3931 16 7 1.5061 2.4138 2.8116 17 6 1.0072 1.7561 4.0267 18 6 1.6569 3.8601 3.0199 19 1 2.0450 4.3196 2.1109 20 6 2.6300 4.1105 4.1736 21 6 0.3163 4.4620 3.3540 22 1 -0.5602 3.8331 3.4060 23 6 0.2084 5.8157 3.5923 24 7 1.2756 6.5817 3.5285 25 14 -1.4532 6.5617 4.0071 26 1 -2.4862 5.4949 4.0165 27 1 -1.3886 7.2006 5.3461 28 1 -1.8057 7.5826 2.9880 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3568 2.1326 0.0629 33 1 2.6422 1.3906 -0.9197 34 1 5.7510 -0.4514 0.4907 35 1 4.3353 -0.2797 -0.5744 36 1 5.7700 4.7457 -2.9677 37 1 7.1683 3.9415 -3.7200 38 1 5.5179 3.3855 -4.0877 39 1 1.7818 1.7737 4.7934 40 1 0.1250 2.2837 4.3894 41 1 0.7447 0.7230 3.7990 42 1 2.7416 5.1837 4.3285 43 1 2.2419 3.6511 5.0826 44 1 3.5997 3.6752 3.9320 45 1 1.1999 7.5340 3.6965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121515397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:15 Heat of formation + Delta-G solvation = 161.906727 kcal Electronic energy + Delta-G solvation = -29317.554838 eV Core-core repulsion = 25375.444799 eV Total energy + Delta-G solvation = -3942.110040 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -44.36395 -42.66569 -37.33634 -36.31797 -36.09693 -34.31879 -32.92809 -32.62804 -31.68713 -29.13297 -28.42545 -27.04857 -26.64518 -25.29581 -25.20238 -23.15818 -22.68409 -21.60527 -21.04936 -20.02496 -19.55051 -17.65674 -17.35894 -16.77255 -16.48133 -16.02598 -15.57358 -15.26814 -15.08490 -14.95987 -14.58997 -14.20472 -13.74889 -13.50257 -13.42014 -13.22213 -13.00839 -12.92756 -12.50082 -12.39669 -12.33526 -11.94845 -11.62142 -11.58403 -11.33452 -11.25093 -11.08206 -10.98446 -10.83450 -10.61565 -10.28244 -10.19322 -10.02197 -9.83907 -9.66792 -9.66645 -8.95660 -8.65583 -8.50664 -7.78143 -6.12549 -4.19475 0.93297 1.76834 1.88113 2.20357 2.30992 2.76030 3.17605 3.22655 3.31074 3.34083 3.67651 4.10521 4.22924 4.29123 4.47574 4.59172 4.64550 4.78137 4.91202 4.98817 5.01063 5.06420 5.18780 5.19870 5.29991 5.34832 5.52165 5.58129 5.67827 5.70444 5.83923 6.04465 6.29870 6.32667 6.39239 6.53794 6.56901 6.77838 6.89790 7.01313 7.11713 7.45037 7.58777 7.69398 7.85285 8.17930 8.20237 8.38707 8.84097 9.09840 9.45731 10.94212 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.003810 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.211880 B = 7347.646412 C = 8052.799960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.186 4.186 3 C 0.139 3.861 4 N -0.461 5.461 5 C 0.136 3.864 6 C 0.079 3.921 7 C 0.163 3.837 8 N -0.263 5.263 9 N -0.288 5.288 10 C 0.163 3.837 11 C -0.059 4.059 12 O -0.226 6.226 13 N -0.263 5.263 14 N -0.311 5.311 15 C 0.392 3.608 16 N -0.469 5.469 17 C 0.046 3.954 18 C 0.224 3.776 19 H 0.034 0.966 20 C -0.173 4.173 21 C -0.508 4.508 22 H 0.067 0.933 23 C 0.062 3.938 24 N -0.888 5.888 25 Si 0.900 3.100 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.284 1.284 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.041 0.959 40 H 0.091 0.909 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 -12.109 -14.734 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.205 4.205 3 C 0.017 3.983 4 N -0.154 5.154 5 C -0.131 4.131 6 C 0.038 3.962 7 C -0.049 4.049 8 N -0.109 5.109 9 N -0.136 5.136 10 C -0.047 4.047 11 C -0.116 4.116 12 O -0.105 6.105 13 N -0.104 5.104 14 N -0.155 5.155 15 C 0.037 3.963 16 N -0.196 5.196 17 C -0.102 4.102 18 C 0.120 3.880 19 H 0.052 0.948 20 C -0.233 4.233 21 C -0.547 4.547 22 H 0.085 0.915 23 C -0.140 4.140 24 N -0.526 5.526 25 Si 0.728 3.272 26 H -0.196 1.196 27 H -0.209 1.209 28 H -0.210 1.210 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.163 0.837 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.065 -11.771 -13.369 18.270 hybrid contribution -2.357 0.575 -0.808 2.557 sum 1.708 -11.195 -14.176 18.144 Atomic orbital electron populations 1.24011 0.95595 1.02708 0.96064 1.22947 0.96466 0.97306 1.03741 1.20923 0.92754 0.98381 0.86264 1.46363 1.11654 1.45370 1.12035 1.23712 0.84286 1.07617 0.97456 1.18166 0.97796 0.90375 0.89878 1.27589 0.92035 0.97926 0.87356 1.74442 1.11888 1.06943 1.17646 1.74444 1.24028 1.12645 1.02472 1.28057 0.82842 0.93846 0.99972 1.20380 1.05842 0.94867 0.90545 1.84748 1.43324 1.42544 1.39933 1.74010 1.23318 1.12897 1.00190 1.74846 0.97764 1.17536 1.25364 1.22981 0.93752 0.96841 0.82737 1.59446 1.17928 1.07593 1.34598 1.22246 1.01097 0.97047 0.89780 1.19414 0.96517 0.77069 0.95009 0.94833 1.22442 0.97640 1.04249 0.98923 1.21020 0.92850 0.92724 1.48062 0.91473 1.24922 0.96892 0.96993 0.95186 1.69921 1.28135 1.05454 1.49089 0.86402 0.83608 0.79161 0.78012 1.19618 1.20943 1.21034 0.87436 0.87959 0.87120 0.87060 0.89000 0.83734 0.86843 0.88072 0.87472 0.88850 0.94063 0.89001 0.93669 0.89514 0.94819 0.94855 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 14.32 29.01 0.42 -1.04 16 2 C -0.19 -1.96 9.85 -36.03 -0.35 -2.31 16 3 C 0.14 1.78 6.32 -5.19 -0.03 1.75 16 4 N -0.46 -7.67 2.79 -115.37 -0.32 -7.99 16 5 C 0.14 2.20 7.30 -154.02 -1.12 1.08 16 6 C 0.08 0.88 6.07 -29.04 -0.18 0.70 16 7 C 0.16 2.23 7.71 -12.94 -0.10 2.13 16 8 N -0.26 -4.30 12.22 32.55 0.40 -3.91 16 9 N -0.29 -4.46 12.22 32.55 0.40 -4.07 16 10 C 0.16 1.99 8.48 -12.94 -0.11 1.88 16 11 C -0.06 -0.39 10.51 36.01 0.38 -0.01 16 12 O -0.23 -2.86 10.87 5.39 0.06 -2.80 16 13 N -0.26 -5.28 12.18 32.99 0.40 -4.88 16 14 N -0.31 -6.88 9.71 30.32 0.29 -6.58 16 15 C 0.39 8.03 6.21 -318.87 -1.98 6.05 16 16 N -0.47 -9.97 4.77 -176.08 -0.84 -10.81 16 17 C 0.05 0.89 8.66 60.06 0.52 1.41 16 18 C 0.22 5.60 2.32 -68.87 -0.16 5.44 16 19 H 0.03 0.94 8.11 -51.93 -0.42 0.52 16 20 C -0.17 -4.44 8.20 37.16 0.30 -4.14 16 21 C -0.51 -13.19 7.80 -34.44 -0.27 -13.46 16 22 H 0.07 1.70 6.82 -52.49 -0.36 1.34 16 23 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 24 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 25 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.11 1.14 7.84 -52.49 -0.41 0.73 16 30 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.11 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.11 1.60 7.79 -51.93 -0.40 1.19 16 33 H 0.09 0.97 7.96 -51.93 -0.41 0.56 16 34 H 0.14 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.11 0.83 7.97 -51.93 -0.41 0.42 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.04 0.84 6.56 -51.93 -0.34 0.50 16 40 H 0.09 1.82 6.29 -51.93 -0.33 1.50 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 43 H 0.03 0.83 6.61 -51.93 -0.34 0.48 16 44 H 0.03 0.85 5.93 -51.93 -0.31 0.54 16 45 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -34.46 379.08 -7.23 -41.69 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.15 Total: 1.40 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.78 Total: 1.05 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.96 Total: -62.50 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.06 Total: -2.80 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.46 -7.23 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121515397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.598 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds