Wall clock time and date at job start Tue Mar 31 2020 18:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99794 * 2 1 4 4 N 1.46505 * 109.47062 * 123.50509 * 3 2 1 5 5 C 1.36739 * 127.14096 * 88.76804 * 4 3 2 6 6 C 1.50697 * 126.34174 * 359.97438 * 5 4 3 7 7 C 1.50701 * 109.47527 * 89.99934 * 6 5 4 8 8 N 1.30275 * 126.28247 * 89.68699 * 7 6 5 9 9 N 1.28665 * 109.38085 * 179.83284 * 8 7 6 10 10 C 1.30282 * 109.38007 * 0.43903 * 9 8 7 11 11 C 1.50700 * 126.28030 * 179.73584 * 10 9 8 12 12 O 1.34360 * 126.28099 * 270.00287 * 7 6 5 13 13 N 1.30286 * 107.30770 * 180.24112 * 5 4 3 14 14 N 1.28532 * 110.05504 * 359.56333 * 13 5 4 15 15 C 1.31221 * 109.85853 * 0.44773 * 14 13 5 16 16 N 1.38578 * 126.47178 * 179.69605 * 15 14 13 17 17 C 1.46899 * 110.99954 * 306.20025 * 16 15 14 18 18 C 1.46899 * 110.99909 * 70.15659 * 16 15 14 19 19 H 1.08997 * 109.47240 * 55.00223 * 18 16 15 20 20 C 1.52996 * 109.47229 * 294.99467 * 18 16 15 21 21 C 1.50703 * 109.47097 * 174.99958 * 18 16 15 22 22 H 1.07998 * 119.99969 * 359.97438 * 21 18 16 23 23 C 1.37874 * 120.00227 * 180.02562 * 21 18 16 24 24 N 1.31518 * 119.99995 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 120.00088 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47166 * 119.99372 * 25 23 21 28 28 H 1.48497 * 109.46839 * 239.99284 * 25 23 21 29 29 H 1.07996 * 120.00410 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99456 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00152 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46963 * 3.50841 * 3 2 1 33 33 H 1.08997 * 109.47187 * 243.50313 * 3 2 1 34 34 H 1.09000 * 109.47195 * 209.99972 * 6 5 4 35 35 H 1.09001 * 109.47269 * 329.99290 * 6 5 4 36 36 H 1.08995 * 109.46784 * 269.99624 * 11 10 9 37 37 H 1.08993 * 109.47407 * 29.99964 * 11 10 9 38 38 H 1.09003 * 109.46916 * 150.00384 * 11 10 9 39 39 H 1.08996 * 109.47069 * 54.43941 * 17 16 15 40 40 H 1.09002 * 109.47143 * 174.43865 * 17 16 15 41 41 H 1.09004 * 109.47296 * 294.43586 * 17 16 15 42 42 H 1.09004 * 109.47416 * 180.02562 * 20 18 16 43 43 H 1.08997 * 109.47627 * 300.00519 * 20 18 16 44 44 H 1.09007 * 109.47130 * 60.00372 * 20 18 16 45 45 H 0.96991 * 120.00178 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9680 1.3468 1.1518 5 6 4.2573 0.8947 1.2057 6 6 5.0260 0.2516 0.0804 7 6 5.7476 1.3148 -0.7071 8 7 6.9498 1.7614 -0.4781 9 7 7.2437 2.6620 -1.3486 10 6 6.2355 2.8274 -2.1570 11 6 6.1683 3.7917 -3.3131 12 8 5.2668 1.9803 -1.7707 13 7 4.6961 1.1178 2.4121 14 7 3.7818 1.6841 3.1159 15 6 2.6986 1.8454 2.3931 16 7 1.5061 2.4138 2.8116 17 6 1.0072 1.7561 4.0267 18 6 1.6569 3.8601 3.0199 19 1 2.0450 4.3196 2.1109 20 6 2.6300 4.1105 4.1736 21 6 0.3163 4.4620 3.3540 22 1 -0.5602 3.8331 3.4060 23 6 0.2084 5.8157 3.5923 24 7 1.2756 6.5817 3.5285 25 14 -1.4532 6.5617 4.0071 26 1 -2.4862 5.4949 4.0165 27 1 -1.3886 7.2006 5.3461 28 1 -1.8057 7.5826 2.9880 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3568 2.1326 0.0629 33 1 2.6422 1.3906 -0.9197 34 1 5.7510 -0.4514 0.4907 35 1 4.3353 -0.2797 -0.5744 36 1 5.7700 4.7457 -2.9677 37 1 7.1683 3.9415 -3.7200 38 1 5.5179 3.3855 -4.0877 39 1 1.7818 1.7737 4.7934 40 1 0.1250 2.2837 4.3894 41 1 0.7447 0.7230 3.7990 42 1 2.7416 5.1837 4.3285 43 1 2.2419 3.6511 5.0826 44 1 3.5997 3.6752 3.9320 45 1 1.1999 7.5340 3.6965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121515397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:14 Heat of formation + Delta-G solvation = 137.056559 kcal Electronic energy + Delta-G solvation = -29318.632423 eV Core-core repulsion = 25375.444799 eV Total energy + Delta-G solvation = -3943.187624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.38247 -44.09466 -39.08577 -37.36982 -37.20026 -35.41163 -34.76181 -33.69316 -32.71369 -30.91306 -29.77523 -28.18926 -27.73722 -27.24571 -26.90836 -24.23519 -23.65941 -23.31963 -22.21035 -21.35387 -20.82473 -18.69813 -18.44329 -18.42711 -17.94463 -17.51793 -17.13702 -16.58618 -16.23015 -16.04115 -15.75294 -15.60936 -15.06932 -14.88687 -14.55859 -14.25909 -14.01518 -13.86439 -13.58789 -13.55234 -13.43825 -13.40827 -13.12585 -13.01961 -12.97510 -12.76188 -12.62738 -12.53067 -12.38948 -12.12323 -12.08916 -12.04578 -11.62806 -11.14394 -10.94603 -10.70566 -10.57319 -10.50158 -10.16826 -9.51566 -8.16731 -6.30880 -0.06968 0.53613 0.90015 1.17327 1.22372 1.43395 1.45432 1.57037 1.64019 1.74071 2.40451 2.76746 2.97265 3.13153 3.16200 3.30937 3.55478 3.71337 3.85897 4.05411 4.09131 4.16000 4.18470 4.30308 4.40674 4.49109 4.51586 4.57705 4.61342 4.68109 4.69341 4.74203 4.88011 4.98317 4.99658 5.00618 5.04940 5.07383 5.33640 5.55989 5.57640 5.61328 5.72751 5.78810 5.94619 6.15971 6.56509 6.79508 7.14636 7.38833 7.63208 8.90580 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.003810 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.211880 B = 7347.646412 C = 8052.799960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.191 4.191 3 C 0.133 3.867 4 N -0.454 5.454 5 C 0.164 3.836 6 C 0.081 3.919 7 C 0.163 3.837 8 N -0.303 5.303 9 N -0.333 5.333 10 C 0.175 3.825 11 C -0.060 4.060 12 O -0.225 6.225 13 N -0.306 5.306 14 N -0.346 5.346 15 C 0.368 3.632 16 N -0.461 5.461 17 C 0.051 3.949 18 C 0.237 3.763 19 H -0.006 1.006 20 C -0.155 4.155 21 C -0.514 4.514 22 H 0.075 0.925 23 C 0.013 3.987 24 N -0.923 5.923 25 Si 0.969 3.031 26 H -0.258 1.258 27 H -0.284 1.284 28 H -0.282 1.282 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.026 0.974 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.024 0.976 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -13.782 -16.855 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.209 4.209 3 C 0.013 3.987 4 N -0.146 5.146 5 C -0.105 4.105 6 C 0.041 3.959 7 C -0.051 4.051 8 N -0.149 5.149 9 N -0.180 5.180 10 C -0.036 4.036 11 C -0.117 4.117 12 O -0.104 6.104 13 N -0.146 5.146 14 N -0.190 5.190 15 C 0.011 3.989 16 N -0.187 5.187 17 C -0.096 4.096 18 C 0.131 3.869 19 H 0.012 0.988 20 C -0.215 4.215 21 C -0.552 4.552 22 H 0.093 0.907 23 C -0.186 4.186 24 N -0.563 5.563 25 Si 0.794 3.206 26 H -0.181 1.181 27 H -0.210 1.210 28 H -0.208 1.208 29 H 0.114 0.886 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.183 0.817 35 H 0.181 0.819 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.044 0.956 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.341 -13.468 -15.508 20.673 hybrid contribution -1.760 1.082 -0.273 2.084 sum 0.581 -12.386 -15.781 20.070 Atomic orbital electron populations 1.24176 0.95567 1.03305 0.94792 1.22947 0.96570 0.96688 1.04725 1.21218 0.92517 0.99293 0.85716 1.46581 1.12220 1.44205 1.11631 1.24540 0.83815 1.04761 0.97402 1.18616 0.98703 0.89689 0.88919 1.27864 0.91613 0.97975 0.87604 1.74354 1.13644 1.08054 1.18805 1.74373 1.25935 1.13844 1.03799 1.29127 0.81702 0.93003 0.99750 1.20762 1.07736 0.93844 0.89336 1.84768 1.43327 1.42641 1.39704 1.73927 1.23607 1.14919 1.02176 1.74698 0.98676 1.18449 1.27157 1.22886 0.93337 0.98434 0.84284 1.59316 1.18570 1.05637 1.35127 1.22236 1.00205 0.98333 0.88843 1.19040 0.95787 0.79536 0.92567 0.98807 1.22240 0.97627 1.02140 0.99472 1.21275 0.93279 0.93078 1.47606 0.90694 1.25781 1.00390 0.97488 0.94968 1.70071 1.30405 1.05667 1.50117 0.85336 0.79441 0.78424 0.77416 1.18117 1.21045 1.20800 0.88641 0.85624 0.84866 0.89125 0.86345 0.81668 0.81939 0.87336 0.85810 0.85862 0.95556 0.89381 0.90913 0.92204 0.94606 0.95681 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.19 -3.42 9.85 25.64 0.25 -3.16 16 3 C 0.13 3.16 6.32 85.63 0.54 3.70 16 4 N -0.45 -14.65 2.79 -518.91 -1.45 -16.10 16 5 C 0.16 5.08 7.30 137.64 1.01 6.09 16 6 C 0.08 1.59 6.07 29.10 0.18 1.76 16 7 C 0.16 4.21 7.71 88.34 0.68 4.89 16 8 N -0.30 -9.88 12.22 -165.50 -2.02 -11.91 16 9 N -0.33 -10.27 12.22 -165.50 -2.02 -12.29 16 10 C 0.17 4.01 8.48 88.34 0.75 4.76 16 11 C -0.06 -0.64 10.51 71.24 0.75 0.10 16 12 O -0.22 -5.23 10.87 -3.61 -0.04 -5.27 16 13 N -0.31 -12.40 12.18 -49.54 -0.60 -13.00 16 14 N -0.35 -15.65 9.71 -58.00 -0.56 -16.22 16 15 C 0.37 15.18 6.21 260.11 1.62 16.79 16 16 N -0.46 -19.78 4.77 -711.00 -3.39 -23.17 16 17 C 0.05 1.98 8.66 127.69 1.11 3.09 16 18 C 0.24 12.20 2.32 44.17 0.10 12.31 16 19 H -0.01 -0.35 8.11 -2.39 -0.02 -0.37 16 20 C -0.16 -8.32 8.20 71.98 0.59 -7.72 16 21 C -0.51 -26.96 7.80 25.60 0.20 -26.76 16 22 H 0.08 3.75 6.82 -2.91 -0.02 3.73 16 23 C 0.01 0.68 5.30 84.65 0.45 1.13 16 24 N -0.92 -53.15 11.32 21.45 0.24 -52.91 16 25 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 28 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 29 H 0.10 1.87 7.84 -2.91 -0.02 1.84 16 30 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.09 2.55 7.79 -2.38 -0.02 2.54 16 33 H 0.12 2.14 7.96 -2.39 -0.02 2.12 16 34 H 0.17 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.16 1.59 7.97 -2.39 -0.02 1.57 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.03 1.08 6.56 -2.39 -0.02 1.07 16 40 H 0.09 3.45 6.29 -2.39 -0.02 3.44 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.06 3.51 6.07 -2.38 -0.01 3.49 16 43 H 0.03 1.83 6.61 -2.39 -0.02 1.81 16 44 H 0.02 1.34 5.93 -2.38 -0.01 1.33 16 45 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -79.31 379.08 2.37 -76.94 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.01 Total: 14.42 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 9.19 Total: 15.56 kcal Atomic # 7 Polarization: -135.78 SS G_CDS: -9.81 Total: -145.60 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.04 Total: -5.27 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -79.31 2.37 -76.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121515397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.996 kcal (2) G-P(sol) polarization free energy of solvation -79.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds