Wall clock time and date at job start Tue Mar 31 2020 18:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47518 * 2 1 4 4 C 1.53004 * 109.46920 * 240.00401 * 2 1 3 5 5 C 1.53006 * 109.47124 * 175.00011 * 4 2 1 6 6 H 1.09003 * 109.46916 * 54.99671 * 5 4 2 7 7 C 1.52996 * 109.46933 * 175.00027 * 5 4 2 8 8 N 1.46498 * 109.46941 * 294.99946 * 5 4 2 9 9 C 1.34778 * 119.99742 * 154.99861 * 8 5 4 10 10 O 1.21563 * 120.00105 * 0.02562 * 9 8 5 11 11 C 1.47725 * 119.99608 * 179.97438 * 9 8 5 12 12 C 1.40115 * 120.35431 * 0.02562 * 11 9 8 13 13 N 1.31262 * 121.14784 * 180.23526 * 12 11 9 14 14 C 1.32716 * 121.79927 * 359.47308 * 13 12 11 15 15 C 1.40785 * 120.68174 * 0.52373 * 14 13 12 16 16 C 1.39439 * 120.34761 * 179.97438 * 11 9 8 17 17 N 1.35337 * 107.75475 * 179.74423 * 15 14 13 18 18 N 1.28667 * 109.99827 * 0.02562 * 17 15 14 19 19 N 1.37120 * 133.40041 * 180.18523 * 14 13 12 20 20 C 1.46492 * 126.59358 * 0.32458 * 19 14 13 21 21 N 1.46499 * 109.47308 * 120.00586 * 2 1 3 22 22 C 1.36938 * 119.99911 * 274.99692 * 21 2 1 23 23 H 1.07998 * 119.99756 * 0.02562 * 22 21 2 24 24 C 1.38814 * 120.00201 * 180.02562 * 22 21 2 25 25 N 1.31617 * 120.00002 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99913 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.47195 * 90.00167 * 26 24 22 28 28 H 1.48504 * 109.47272 * 210.00098 * 26 24 22 29 29 H 1.48502 * 109.47143 * 330.00396 * 26 24 22 30 30 H 1.08997 * 109.47628 * 59.99477 * 1 2 3 31 31 H 1.08997 * 109.47518 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47259 * 299.99643 * 1 2 3 33 33 H 1.08996 * 109.47268 * 55.00332 * 4 2 1 34 34 H 1.08999 * 109.47154 * 294.99993 * 4 2 1 35 35 H 1.09007 * 109.46656 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.47056 * 299.99723 * 7 5 4 37 37 H 1.08998 * 109.47184 * 59.99937 * 7 5 4 38 38 H 0.97000 * 120.00337 * 334.99723 * 8 5 4 39 39 H 1.08002 * 119.42201 * 359.95108 * 12 11 9 40 40 H 1.07999 * 120.94937 * 0.04482 * 16 11 9 41 41 H 1.09003 * 109.47435 * 269.94889 * 20 19 14 42 42 H 1.09003 * 109.47131 * 29.94909 * 20 19 14 43 43 H 1.09003 * 109.47586 * 149.94976 * 20 19 14 44 44 H 0.96999 * 120.00311 * 95.00255 * 21 2 1 45 45 H 0.97001 * 120.00096 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.9953 -0.9922 -0.3869 7 6 4.0850 -1.4382 -2.4927 8 7 3.9479 0.7894 -1.4925 9 6 5.1611 1.2135 -1.0867 10 8 5.9377 0.4320 -0.5729 11 6 5.5476 2.6278 -1.2674 12 6 4.6585 3.5348 -1.8592 13 7 4.9875 4.7938 -2.0315 14 6 6.1660 5.2676 -1.6468 15 6 7.1176 4.4233 -1.0439 16 6 6.8007 3.0746 -0.8498 17 7 8.2127 5.1683 -0.7654 18 7 8.0235 6.3851 -1.1384 19 7 6.7466 6.5085 -1.7038 20 6 6.1474 7.7288 -2.2495 21 7 2.0183 -0.6907 1.1961 22 6 2.1492 -0.0077 2.3757 23 1 1.8919 1.0401 2.4243 24 6 2.6124 -0.6620 3.5089 25 7 2.7377 -0.0055 4.6428 26 14 3.0566 -2.4744 3.4249 27 1 4.4892 -2.6166 3.0604 28 1 2.8177 -3.1045 4.7483 29 1 2.2162 -3.1430 2.3993 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6053 -0.2616 -2.1370 34 1 1.7515 -1.7714 -1.2057 35 1 5.1714 -1.3616 -2.5383 36 1 3.7999 -2.4818 -2.3597 37 1 3.6544 -1.0591 -3.4195 38 1 3.3284 1.4129 -1.9028 39 1 3.6874 3.1909 -2.1834 40 1 7.5067 2.3986 -0.3905 41 1 6.3868 7.8084 -3.3099 42 1 5.0655 7.6902 -2.1231 43 1 6.5442 8.5960 -1.7215 44 1 2.2491 -1.6319 1.1525 45 1 3.0618 -0.4626 5.4346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135061843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:38 Heat of formation + Delta-G solvation = 105.469526 kcal Electronic energy + Delta-G solvation = -28406.949529 eV Core-core repulsion = 24462.392188 eV Total energy + Delta-G solvation = -3944.557341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.59618 -40.11817 -38.48459 -36.99973 -35.16899 -34.67697 -32.53414 -32.22812 -31.50516 -30.17328 -29.22417 -28.01279 -26.46828 -25.22203 -24.47339 -23.31114 -21.73998 -21.68521 -20.73047 -19.89680 -18.85296 -18.21234 -17.59680 -17.10847 -16.74084 -16.33190 -15.77144 -15.01633 -14.71235 -14.40870 -14.15602 -14.10098 -13.86447 -13.68464 -13.44881 -13.32779 -13.28298 -13.01258 -12.74682 -12.66701 -12.41787 -12.18099 -12.00579 -11.95905 -11.75489 -11.32675 -11.18685 -10.90892 -10.68548 -10.53783 -10.31567 -10.25582 -9.97767 -9.66776 -9.54906 -9.54763 -9.19464 -8.90542 -8.86947 -7.23484 -5.72729 -3.07992 -0.04825 0.40819 1.47676 1.80838 2.73137 3.04515 3.41087 3.45208 3.46952 3.50662 3.54792 3.84013 4.02027 4.25618 4.36452 4.62905 4.63976 4.70780 4.88177 4.98572 5.04115 5.08249 5.20517 5.25645 5.47451 5.48867 5.55418 5.59697 5.72668 5.76956 5.81407 5.85573 5.96875 6.05423 6.15426 6.20980 6.28904 6.39887 6.47582 6.63300 6.78084 6.96673 7.17011 7.52120 7.56532 8.01968 8.29302 8.45936 9.24436 9.97315 10.15958 11.45796 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.003230 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.755873 B = 8667.549009 C = 9263.065133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.136 4.136 5 C 0.143 3.857 6 H 0.103 0.897 7 C -0.163 4.163 8 N -0.710 5.710 9 C 0.571 3.429 10 O -0.523 6.523 11 C -0.201 4.201 12 C 0.213 3.787 13 N -0.487 5.487 14 C 0.286 3.714 15 C -0.073 4.073 16 C 0.084 3.916 17 N -0.195 5.195 18 N 0.008 4.992 19 N -0.387 5.387 20 C 0.102 3.898 21 N -0.745 5.745 22 C -0.240 4.240 23 H 0.087 0.913 24 C 0.006 3.994 25 N -0.935 5.935 26 Si 0.881 3.119 27 H -0.282 1.282 28 H -0.293 1.293 29 H -0.277 1.277 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.394 0.606 39 H 0.178 0.822 40 H 0.166 0.834 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.360 0.640 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 9.762 -20.697 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.174 4.174 5 C 0.040 3.960 6 H 0.121 0.879 7 C -0.221 4.221 8 N -0.361 5.361 9 C 0.357 3.643 10 O -0.399 6.399 11 C -0.210 4.210 12 C 0.039 3.961 13 N -0.201 5.201 14 C 0.043 3.957 15 C -0.198 4.198 16 C 0.053 3.947 17 N -0.075 5.075 18 N 0.027 4.973 19 N -0.183 5.183 20 C -0.039 4.039 21 N -0.388 5.388 22 C -0.369 4.369 23 H 0.105 0.895 24 C -0.190 4.190 25 N -0.582 5.582 26 Si 0.711 3.289 27 H -0.209 1.209 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.229 0.771 39 H 0.195 0.805 40 H 0.184 0.816 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.924 10.864 -20.190 23.260 hybrid contribution -0.497 -1.758 0.062 1.828 sum 3.426 9.107 -20.128 22.356 Atomic orbital electron populations 1.22428 0.99000 1.00862 1.00342 1.20200 0.91785 0.95811 0.85536 0.92753 1.22241 0.93594 1.02375 0.99227 1.21066 0.95209 0.79853 0.99904 0.87935 1.22202 1.01764 1.00103 0.98033 1.45817 1.15962 1.11862 1.62449 1.17589 0.82395 0.86055 0.78309 1.90828 1.51086 1.55457 1.42495 1.20817 0.96313 0.96408 1.07415 1.23030 0.98096 0.85900 0.89060 1.66621 1.15425 1.16199 1.21900 1.19530 0.92131 0.87117 0.96916 1.20364 0.93403 0.96553 1.09515 1.21107 0.94708 0.91147 0.87719 1.74880 1.21027 0.97853 1.13729 1.81759 0.94397 1.12068 1.09069 1.49973 1.12588 1.07451 1.48251 1.22081 0.99475 0.82694 0.99654 1.42773 1.79680 1.09238 1.07156 1.18988 1.36896 0.95333 0.85726 0.89478 1.24640 1.01345 0.97384 0.95582 1.69695 1.52653 1.35585 1.00303 0.86605 0.78701 0.86882 0.76685 1.20863 1.21926 1.20362 0.94341 0.93635 0.92428 0.91379 0.90535 0.92268 0.91693 0.92771 0.77089 0.80547 0.81602 0.89827 0.88300 0.88340 0.80743 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.49 37.15 0.35 -2.27 16 2 C 0.18 2.97 2.84 -67.93 -0.19 2.78 16 3 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 4 C -0.14 -1.72 4.29 -26.73 -0.11 -1.83 16 5 C 0.14 1.96 2.52 -67.93 -0.17 1.79 16 6 H 0.10 1.86 7.05 -51.93 -0.37 1.50 16 7 C -0.16 -1.84 9.48 37.16 0.35 -1.49 16 8 N -0.71 -8.66 4.40 -54.79 -0.24 -8.90 16 9 C 0.57 8.38 7.74 -12.38 -0.10 8.29 16 10 O -0.52 -9.88 16.06 5.31 0.09 -9.79 16 11 C -0.20 -2.50 5.88 -104.87 -0.62 -3.11 16 12 C 0.21 2.15 10.69 -17.09 -0.18 1.97 16 13 N -0.49 -5.53 10.37 -12.03 -0.12 -5.65 16 14 C 0.29 3.58 8.05 -155.93 -1.26 2.33 16 15 C -0.07 -0.99 7.27 -84.74 -0.62 -1.61 16 16 C 0.08 1.11 9.75 -38.51 -0.38 0.74 16 17 N -0.19 -2.78 12.40 32.17 0.40 -2.38 16 18 N 0.01 0.11 13.71 60.35 0.83 0.93 16 19 N -0.39 -4.24 4.10 -67.18 -0.28 -4.51 16 20 C 0.10 0.60 11.54 59.84 0.69 1.29 16 21 N -0.75 -16.59 4.30 -53.43 -0.23 -16.82 16 22 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 23 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 26 Si 0.88 22.34 27.73 -169.99 -4.71 17.63 16 27 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.39 3.42 6.64 -40.82 -0.27 3.15 16 39 H 0.18 1.12 6.39 -52.49 -0.34 0.78 16 40 H 0.17 2.16 7.71 -52.49 -0.40 1.75 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.36 8.02 5.66 -40.82 -0.23 7.79 16 45 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -36.46 380.18 -6.49 -42.95 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.24 Total: 7.43 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.48 Total: 2.21 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: 1.13 Total: -66.15 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.46 -6.49 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135061843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.420 kcal (2) G-P(sol) polarization free energy of solvation -36.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds