Wall clock time and date at job start Tue Mar 31 2020 18:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47518 * 2 1 4 4 C 1.53004 * 109.46920 * 240.00401 * 2 1 3 5 5 C 1.53006 * 109.47124 * 175.00011 * 4 2 1 6 6 H 1.09003 * 109.46916 * 54.99671 * 5 4 2 7 7 C 1.52996 * 109.46933 * 175.00027 * 5 4 2 8 8 N 1.46498 * 109.46941 * 294.99946 * 5 4 2 9 9 C 1.34778 * 119.99742 * 154.99861 * 8 5 4 10 10 O 1.21563 * 120.00105 * 0.02562 * 9 8 5 11 11 C 1.47725 * 119.99608 * 179.97438 * 9 8 5 12 12 C 1.40115 * 120.35431 * 0.02562 * 11 9 8 13 13 N 1.31262 * 121.14784 * 180.23526 * 12 11 9 14 14 C 1.32716 * 121.79927 * 359.47308 * 13 12 11 15 15 C 1.40785 * 120.68174 * 0.52373 * 14 13 12 16 16 C 1.39439 * 120.34761 * 179.97438 * 11 9 8 17 17 N 1.35337 * 107.75475 * 179.74423 * 15 14 13 18 18 N 1.28667 * 109.99827 * 0.02562 * 17 15 14 19 19 N 1.37120 * 133.40041 * 180.18523 * 14 13 12 20 20 C 1.46492 * 126.59358 * 0.32458 * 19 14 13 21 21 N 1.46499 * 109.47308 * 120.00586 * 2 1 3 22 22 C 1.36938 * 119.99911 * 274.99692 * 21 2 1 23 23 H 1.07998 * 119.99756 * 0.02562 * 22 21 2 24 24 C 1.38814 * 120.00201 * 180.02562 * 22 21 2 25 25 N 1.31617 * 120.00002 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99913 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.47195 * 90.00167 * 26 24 22 28 28 H 1.48504 * 109.47272 * 210.00098 * 26 24 22 29 29 H 1.48502 * 109.47143 * 330.00396 * 26 24 22 30 30 H 1.08997 * 109.47628 * 59.99477 * 1 2 3 31 31 H 1.08997 * 109.47518 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47259 * 299.99643 * 1 2 3 33 33 H 1.08996 * 109.47268 * 55.00332 * 4 2 1 34 34 H 1.08999 * 109.47154 * 294.99993 * 4 2 1 35 35 H 1.09007 * 109.46656 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.47056 * 299.99723 * 7 5 4 37 37 H 1.08998 * 109.47184 * 59.99937 * 7 5 4 38 38 H 0.97000 * 120.00337 * 334.99723 * 8 5 4 39 39 H 1.08002 * 119.42201 * 359.95108 * 12 11 9 40 40 H 1.07999 * 120.94937 * 0.04482 * 16 11 9 41 41 H 1.09003 * 109.47435 * 269.94889 * 20 19 14 42 42 H 1.09003 * 109.47131 * 29.94909 * 20 19 14 43 43 H 1.09003 * 109.47586 * 149.94976 * 20 19 14 44 44 H 0.96999 * 120.00311 * 95.00255 * 21 2 1 45 45 H 0.97001 * 120.00096 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.9953 -0.9922 -0.3869 7 6 4.0850 -1.4382 -2.4927 8 7 3.9479 0.7894 -1.4925 9 6 5.1611 1.2135 -1.0867 10 8 5.9377 0.4320 -0.5729 11 6 5.5476 2.6278 -1.2674 12 6 4.6585 3.5348 -1.8592 13 7 4.9875 4.7938 -2.0315 14 6 6.1660 5.2676 -1.6468 15 6 7.1176 4.4233 -1.0439 16 6 6.8007 3.0746 -0.8498 17 7 8.2127 5.1683 -0.7654 18 7 8.0235 6.3851 -1.1384 19 7 6.7466 6.5085 -1.7038 20 6 6.1474 7.7288 -2.2495 21 7 2.0183 -0.6907 1.1961 22 6 2.1492 -0.0077 2.3757 23 1 1.8919 1.0401 2.4243 24 6 2.6124 -0.6620 3.5089 25 7 2.7377 -0.0055 4.6428 26 14 3.0566 -2.4744 3.4249 27 1 4.4892 -2.6166 3.0604 28 1 2.8177 -3.1045 4.7483 29 1 2.2162 -3.1430 2.3993 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6053 -0.2616 -2.1370 34 1 1.7515 -1.7714 -1.2057 35 1 5.1714 -1.3616 -2.5383 36 1 3.7999 -2.4818 -2.3597 37 1 3.6544 -1.0591 -3.4195 38 1 3.3284 1.4129 -1.9028 39 1 3.6874 3.1909 -2.1834 40 1 7.5067 2.3986 -0.3905 41 1 6.3868 7.8084 -3.3099 42 1 5.0655 7.6902 -2.1231 43 1 6.5442 8.5960 -1.7215 44 1 2.2491 -1.6319 1.1525 45 1 3.0618 -0.4626 5.4346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135061843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:37 Heat of formation + Delta-G solvation = 77.810614 kcal Electronic energy + Delta-G solvation = -28408.148909 eV Core-core repulsion = 24462.392188 eV Total energy + Delta-G solvation = -3945.756721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.53698 -41.21649 -39.48368 -38.33432 -36.18842 -35.97873 -34.11178 -33.41470 -32.71081 -31.36784 -30.76090 -28.70502 -27.54198 -26.21130 -25.45728 -25.24133 -22.77144 -22.62787 -21.90841 -21.28801 -19.96162 -19.54439 -19.08570 -18.07595 -17.63246 -17.34566 -16.93180 -16.53811 -16.09626 -15.81856 -15.28591 -15.17247 -15.01691 -14.66602 -14.55293 -14.38908 -14.29023 -14.09594 -14.00308 -13.93149 -13.68344 -13.38070 -13.19913 -12.96744 -12.81502 -12.77893 -12.58193 -12.25963 -12.09017 -11.97337 -11.83045 -11.63548 -11.38650 -11.36638 -10.92728 -10.72090 -10.49085 -10.20380 -9.91382 -9.22238 -7.98083 -5.27500 -0.99734 -0.57095 0.67758 0.83911 1.35701 1.42165 1.46617 1.66609 2.01273 2.51564 2.52472 2.61033 2.95647 3.04952 3.35869 3.37672 3.51630 3.69569 3.72082 3.90121 4.09306 4.17623 4.29872 4.31883 4.42425 4.58345 4.60424 4.61100 4.69048 4.74706 4.85066 4.88210 4.90879 4.97802 5.08399 5.15839 5.25556 5.28798 5.41153 5.44436 5.62086 5.67783 5.84780 6.25410 6.27127 6.54399 6.57896 7.15768 7.24053 7.95616 8.09815 9.24204 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.003230 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.755873 B = 8667.549009 C = 9263.065133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 H 0.049 0.951 4 C -0.122 4.122 5 C 0.141 3.859 6 H 0.052 0.948 7 C -0.154 4.154 8 N -0.694 5.694 9 C 0.568 3.432 10 O -0.575 6.575 11 C -0.203 4.203 12 C 0.227 3.773 13 N -0.481 5.481 14 C 0.277 3.723 15 C -0.090 4.090 16 C 0.071 3.929 17 N -0.224 5.224 18 N 0.000 5.000 19 N -0.375 5.375 20 C 0.089 3.911 21 N -0.749 5.749 22 C -0.209 4.209 23 H 0.055 0.945 24 C -0.070 4.070 25 N -0.989 5.989 26 Si 0.945 3.055 27 H -0.291 1.291 28 H -0.301 1.301 29 H -0.243 1.243 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.023 0.977 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.415 0.585 39 H 0.221 0.779 40 H 0.155 0.845 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.361 0.639 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.273 9.755 -24.590 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.067 0.933 4 C -0.160 4.160 5 C 0.037 3.963 6 H 0.070 0.930 7 C -0.212 4.212 8 N -0.346 5.346 9 C 0.355 3.645 10 O -0.455 6.455 11 C -0.212 4.212 12 C 0.053 3.947 13 N -0.195 5.195 14 C 0.034 3.966 15 C -0.217 4.217 16 C 0.040 3.960 17 N -0.103 5.103 18 N 0.018 4.982 19 N -0.172 5.172 20 C -0.050 4.050 21 N -0.393 5.393 22 C -0.340 4.340 23 H 0.073 0.927 24 C -0.260 4.260 25 N -0.641 5.641 26 Si 0.774 3.226 27 H -0.218 1.218 28 H -0.228 1.228 29 H -0.168 1.168 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.253 0.747 39 H 0.237 0.763 40 H 0.173 0.827 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.194 0.806 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.530 10.899 -24.187 26.573 hybrid contribution 0.157 -1.589 1.166 1.977 sum 1.686 9.310 -23.021 24.890 Atomic orbital electron populations 1.22299 0.97409 1.01253 1.00854 1.20569 0.92746 0.95706 0.85286 0.93297 1.22170 0.92385 1.02895 0.98526 1.20999 0.95916 0.80505 0.98895 0.92966 1.22112 1.00559 1.00344 0.98153 1.45691 1.15405 1.12051 1.61446 1.17908 0.82592 0.86467 0.77583 1.90806 1.52772 1.56935 1.45012 1.20723 0.96508 0.95735 1.08202 1.23640 0.98833 0.84953 0.87305 1.66790 1.14522 1.16384 1.21821 1.19759 0.92341 0.87584 0.96955 1.20504 0.93909 0.96850 1.10407 1.21124 0.95316 0.91256 0.88307 1.74848 1.21932 0.98508 1.15053 1.81662 0.95541 1.11619 1.09341 1.50369 1.11752 1.08206 1.46828 1.22567 1.00071 0.81319 1.01020 1.42857 1.79849 1.09345 1.07227 1.18971 1.33501 0.94117 0.87441 0.92657 1.25411 1.03120 1.01992 0.95512 1.69877 1.55564 1.37485 1.01198 0.85540 0.78185 0.81901 0.76976 1.21827 1.22819 1.16753 0.89964 0.93300 0.95799 0.86445 0.89571 0.94272 0.90814 0.89547 0.74669 0.76254 0.82740 0.87636 0.87088 0.86475 0.80566 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.49 71.98 0.68 -3.74 16 2 C 0.16 5.06 2.84 44.99 0.13 5.19 16 3 H 0.05 1.57 7.56 -2.39 -0.02 1.55 16 4 C -0.12 -2.51 4.29 30.60 0.13 -2.38 16 5 C 0.14 3.50 2.52 44.99 0.11 3.62 16 6 H 0.05 1.87 7.05 -2.39 -0.02 1.86 16 7 C -0.15 -2.99 9.48 71.98 0.68 -2.30 16 8 N -0.69 -15.28 4.40 -445.52 -1.96 -17.24 16 9 C 0.57 16.55 7.74 86.75 0.67 17.22 16 10 O -0.58 -22.71 16.06 -3.91 -0.06 -22.77 16 11 C -0.20 -4.96 5.88 -20.02 -0.12 -5.08 16 12 C 0.23 4.02 10.69 85.23 0.91 4.93 16 13 N -0.48 -9.80 10.37 -191.98 -1.99 -11.80 16 14 C 0.28 6.67 8.05 134.01 1.08 7.75 16 15 C -0.09 -2.53 7.27 39.63 0.29 -2.24 16 16 C 0.07 1.97 9.75 22.96 0.22 2.19 16 17 N -0.22 -6.62 12.40 -52.15 -0.65 -7.27 16 18 N 0.00 -0.01 13.71 37.02 0.51 0.50 16 19 N -0.37 -7.76 4.10 -366.46 -1.50 -9.26 16 20 C 0.09 0.83 11.54 127.77 1.47 2.31 16 21 N -0.75 -32.53 4.30 -322.95 -1.39 -33.92 16 22 C -0.21 -11.67 10.41 84.03 0.87 -10.80 16 23 H 0.06 3.40 8.06 -2.91 -0.02 3.37 16 24 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 25 N -0.99 -65.24 13.97 21.65 0.30 -64.94 16 26 Si 0.95 47.09 27.73 68.60 1.90 48.99 16 27 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 28 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 29 H -0.24 -10.58 6.52 99.48 0.65 -9.93 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.41 5.40 6.64 -92.71 -0.62 4.79 16 39 H 0.22 1.74 6.39 -2.91 -0.02 1.73 16 40 H 0.15 4.49 7.71 -2.91 -0.02 4.47 16 41 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.12 0.68 8.14 -2.39 -0.02 0.67 16 44 H 0.36 15.46 5.66 -92.71 -0.52 14.94 16 45 H 0.25 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -85.89 380.18 2.61 -83.28 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.16 Total: 21.48 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 7.61 Total: 12.94 kcal Atomic # 7 Polarization: -137.25 SS G_CDS: -6.68 Total: -143.93 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.90 Total: 48.99 kcal Total: -85.89 2.61 -83.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135061843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.093 kcal (2) G-P(sol) polarization free energy of solvation -85.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds