Wall clock time and date at job start Tue Mar 31 2020 18:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47029 * 2 1 4 4 C 1.52999 * 109.47176 * 120.00174 * 2 1 3 5 5 C 1.53001 * 109.47063 * 184.99637 * 4 2 1 6 6 H 1.08999 * 109.47551 * 305.00465 * 5 4 2 7 7 C 1.52995 * 109.47151 * 184.99833 * 5 4 2 8 8 N 1.46504 * 109.46711 * 65.00206 * 5 4 2 9 9 C 1.34777 * 119.99854 * 204.99467 * 8 5 4 10 10 O 1.21573 * 119.99941 * 0.02562 * 9 8 5 11 11 C 1.47720 * 120.00116 * 180.27920 * 9 8 5 12 12 C 1.40119 * 120.34988 * 359.72310 * 11 9 8 13 13 N 1.31261 * 121.15024 * 179.97438 * 12 11 9 14 14 C 1.32723 * 121.79816 * 0.02562 * 13 12 11 15 15 C 1.40776 * 120.68015 * 0.02562 * 14 13 12 16 16 C 1.39432 * 120.35252 * 179.45274 * 11 9 8 17 17 N 1.35339 * 107.75375 * 179.97438 * 15 14 13 18 18 N 1.28658 * 109.99951 * 359.97438 * 17 15 14 19 19 N 1.37116 * 133.40063 * 179.97438 * 14 13 12 20 20 C 1.46504 * 126.59534 * 0.02562 * 19 14 13 21 21 N 1.46499 * 109.47193 * 240.00521 * 2 1 3 22 22 C 1.36940 * 120.00319 * 84.99477 * 21 2 1 23 23 H 1.08000 * 119.99514 * 0.02562 * 22 21 2 24 24 C 1.38807 * 120.00200 * 179.97438 * 22 21 2 25 25 N 1.31616 * 120.00111 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 120.00068 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.46942 * 89.99513 * 26 24 22 28 28 H 1.48498 * 109.47030 * 209.99967 * 26 24 22 29 29 H 1.48499 * 109.46779 * 329.99579 * 26 24 22 30 30 H 1.09005 * 109.47162 * 59.99407 * 1 2 3 31 31 H 1.08994 * 109.47486 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46972 * 300.00253 * 1 2 3 33 33 H 1.09000 * 109.46867 * 65.00027 * 4 2 1 34 34 H 1.09000 * 109.47154 * 305.00161 * 4 2 1 35 35 H 1.09001 * 109.47135 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.47409 * 300.00719 * 7 5 4 37 37 H 1.09007 * 109.46569 * 60.00291 * 7 5 4 38 38 H 0.97000 * 120.00410 * 25.00192 * 8 5 4 39 39 H 1.07995 * 119.42475 * 359.97438 * 12 11 9 40 40 H 1.07999 * 120.95069 * 0.02562 * 16 11 9 41 41 H 1.09004 * 109.46958 * 89.99611 * 20 19 14 42 42 H 1.08996 * 109.47349 * 210.00045 * 20 19 14 43 43 H 1.08999 * 109.46943 * 329.99894 * 20 19 14 44 44 H 0.97002 * 119.99674 * 265.00265 * 21 2 1 45 45 H 0.97009 * 120.00222 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4923 8 7 3.9479 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9375 0.4322 0.5720 11 6 5.5499 2.6265 1.2726 12 6 4.6608 3.5333 1.8645 13 7 4.9900 4.7921 2.0377 14 6 6.1726 5.2637 1.6627 15 6 7.1239 4.4196 1.0592 16 6 6.8075 3.0706 0.8660 17 7 8.2212 5.1633 0.7861 18 7 8.0337 6.3791 1.1630 19 7 6.7555 6.5032 1.7253 20 6 6.1575 7.7229 2.2739 21 7 2.0183 -0.6905 -1.1962 22 6 2.1491 -0.0073 -2.3758 23 1 1.8925 1.0406 -2.4241 24 6 2.6123 -0.6615 -3.5091 25 7 2.7384 -0.0047 -4.6427 26 14 3.0567 -2.4739 -3.4253 27 1 1.8596 -3.2924 -3.7452 28 1 4.1325 -2.7657 -4.4065 29 1 3.5313 -2.8044 -2.0575 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -1.7715 1.2055 34 1 1.6054 -0.2618 2.1370 35 1 5.1715 -1.3611 2.5385 36 1 3.6546 -1.0595 3.4192 37 1 3.8001 -2.4820 2.3592 38 1 3.3285 1.4128 1.9028 39 1 3.6877 3.1907 2.1838 40 1 7.5150 2.3937 0.4104 41 1 6.3938 7.7977 3.3354 42 1 6.5579 8.5911 1.7504 43 1 5.0759 7.6873 2.1440 44 1 2.2490 -1.6317 -1.1527 45 1 3.0624 -0.4618 -5.4346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135061844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:42 Heat of formation + Delta-G solvation = 105.415462 kcal Electronic energy + Delta-G solvation = -28406.409147 eV Core-core repulsion = 24461.849462 eV Total energy + Delta-G solvation = -3944.559685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.59847 -40.11719 -38.48450 -36.99812 -35.16964 -34.67506 -32.53429 -32.22850 -31.50510 -30.17295 -29.22402 -28.01417 -26.46670 -25.22290 -24.47446 -23.31107 -21.74150 -21.68450 -20.72940 -19.89300 -18.85363 -18.21347 -17.59695 -17.10909 -16.74241 -16.33164 -15.76677 -15.01955 -14.71713 -14.40866 -14.15343 -14.10432 -13.86462 -13.68277 -13.44999 -13.33065 -13.28146 -13.01509 -12.74787 -12.65624 -12.42324 -12.17256 -12.00107 -11.95993 -11.75171 -11.32651 -11.18804 -10.93307 -10.69082 -10.52416 -10.31005 -10.24911 -9.97403 -9.66780 -9.54975 -9.54963 -9.19568 -8.90194 -8.87541 -7.23531 -5.72700 -3.07999 -0.04969 0.40687 1.47520 1.80691 2.73133 3.04560 3.42017 3.44142 3.46816 3.50453 3.54649 3.83904 4.01888 4.25523 4.36312 4.62868 4.63862 4.70667 4.88318 4.98580 5.04077 5.08102 5.20672 5.26262 5.47315 5.48883 5.55391 5.59933 5.72482 5.77587 5.81312 5.85371 5.97045 6.05270 6.15363 6.21337 6.29201 6.39878 6.48286 6.63561 6.78194 6.96629 7.16868 7.52031 7.56675 8.01951 8.29367 8.45930 9.24433 9.97299 10.15940 11.45801 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003225 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.551074 B = 8680.545129 C = 9272.837927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.143 3.857 6 H 0.103 0.897 7 C -0.162 4.162 8 N -0.709 5.709 9 C 0.571 3.429 10 O -0.523 6.523 11 C -0.200 4.200 12 C 0.213 3.787 13 N -0.487 5.487 14 C 0.286 3.714 15 C -0.073 4.073 16 C 0.084 3.916 17 N -0.195 5.195 18 N 0.008 4.992 19 N -0.387 5.387 20 C 0.102 3.898 21 N -0.745 5.745 22 C -0.239 4.239 23 H 0.087 0.913 24 C 0.006 3.994 25 N -0.935 5.935 26 Si 0.883 3.117 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.276 1.276 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.394 0.606 39 H 0.178 0.822 40 H 0.166 0.834 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.360 0.640 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 9.749 20.742 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.174 4.174 5 C 0.039 3.961 6 H 0.121 0.879 7 C -0.221 4.221 8 N -0.361 5.361 9 C 0.356 3.644 10 O -0.399 6.399 11 C -0.209 4.209 12 C 0.039 3.961 13 N -0.201 5.201 14 C 0.043 3.957 15 C -0.198 4.198 16 C 0.053 3.947 17 N -0.075 5.075 18 N 0.027 4.973 19 N -0.183 5.183 20 C -0.039 4.039 21 N -0.389 5.389 22 C -0.369 4.369 23 H 0.105 0.895 24 C -0.190 4.190 25 N -0.582 5.582 26 Si 0.713 3.287 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.202 1.202 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.229 0.771 39 H 0.195 0.805 40 H 0.184 0.816 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.931 10.853 20.236 23.297 hybrid contribution -0.476 -1.753 -0.060 1.818 sum 3.454 9.100 20.176 22.401 Atomic orbital electron populations 1.22428 0.98963 1.00875 1.00354 1.20204 0.91805 0.95805 0.85525 0.92790 1.22238 0.93602 1.02359 0.99219 1.21072 0.95220 0.79818 0.99943 0.87878 1.22198 1.01749 1.00103 0.98021 1.45821 1.15979 1.11870 1.62412 1.17590 0.82399 0.86037 0.78326 1.90829 1.51130 1.55438 1.42498 1.20816 0.96224 0.96461 1.07435 1.23031 0.98167 0.85880 0.89018 1.66624 1.15299 1.16209 1.21997 1.19528 0.92092 0.87143 0.96942 1.20365 0.93371 0.96555 1.09538 1.21106 0.94741 0.91152 0.87700 1.74877 1.21020 0.97896 1.13700 1.81757 0.94407 1.12067 1.09058 1.49977 1.12470 1.07544 1.48275 1.22083 0.99499 0.82714 0.99605 1.42773 1.79585 1.09357 1.07137 1.18988 1.36951 0.95410 0.85573 0.89478 1.24642 1.01326 0.97407 0.95597 1.69696 1.52681 1.35559 1.00301 0.86574 0.77964 0.86948 0.77201 1.21317 1.21839 1.20180 0.92417 0.93615 0.94330 0.90545 0.91391 0.92287 0.92787 0.91704 0.77098 0.80548 0.81604 0.89825 0.88340 0.88299 0.80736 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 9.49 37.16 0.35 -2.25 16 2 C 0.18 2.97 2.84 -67.93 -0.19 2.77 16 3 H 0.05 0.94 7.56 -51.92 -0.39 0.54 16 4 C -0.14 -1.72 4.29 -26.73 -0.11 -1.84 16 5 C 0.14 1.97 2.52 -67.93 -0.17 1.80 16 6 H 0.10 1.90 7.05 -51.93 -0.37 1.54 16 7 C -0.16 -1.85 9.48 37.16 0.35 -1.50 16 8 N -0.71 -8.70 4.40 -54.79 -0.24 -8.95 16 9 C 0.57 8.40 7.74 -12.39 -0.10 8.31 16 10 O -0.52 -9.90 16.06 5.30 0.09 -9.81 16 11 C -0.20 -2.50 5.88 -104.87 -0.62 -3.11 16 12 C 0.21 2.16 10.69 -17.09 -0.18 1.97 16 13 N -0.49 -5.53 10.37 -12.03 -0.12 -5.65 16 14 C 0.29 3.58 8.05 -155.93 -1.26 2.32 16 15 C -0.07 -0.99 7.27 -84.74 -0.62 -1.61 16 16 C 0.08 1.11 9.75 -38.51 -0.38 0.73 16 17 N -0.19 -2.78 12.40 32.17 0.40 -2.38 16 18 N 0.01 0.11 13.71 60.35 0.83 0.94 16 19 N -0.39 -4.23 4.10 -67.18 -0.28 -4.51 16 20 C 0.10 0.60 11.54 59.85 0.69 1.29 16 21 N -0.75 -16.58 4.30 -53.43 -0.23 -16.81 16 22 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 23 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 25 N -0.93 -29.60 13.97 55.49 0.78 -28.83 16 26 Si 0.88 22.38 27.74 -169.99 -4.71 17.67 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 29 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.39 3.44 6.64 -40.82 -0.27 3.17 16 39 H 0.18 1.12 6.39 -52.49 -0.34 0.79 16 40 H 0.17 2.15 7.71 -52.49 -0.40 1.75 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.36 8.01 5.66 -40.82 -0.23 7.78 16 45 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -36.41 380.18 -6.49 -42.90 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.24 Total: 7.46 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -2.48 Total: 2.23 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: 1.13 Total: -66.18 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.41 -6.49 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135061844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.317 kcal (2) G-P(sol) polarization free energy of solvation -36.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds