Wall clock time and date at job start Tue Mar 31 2020 18:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47029 * 2 1 4 4 C 1.52999 * 109.47176 * 120.00174 * 2 1 3 5 5 C 1.53001 * 109.47063 * 184.99637 * 4 2 1 6 6 H 1.08999 * 109.47551 * 305.00465 * 5 4 2 7 7 C 1.52995 * 109.47151 * 184.99833 * 5 4 2 8 8 N 1.46504 * 109.46711 * 65.00206 * 5 4 2 9 9 C 1.34777 * 119.99854 * 204.99467 * 8 5 4 10 10 O 1.21573 * 119.99941 * 0.02562 * 9 8 5 11 11 C 1.47720 * 120.00116 * 180.27920 * 9 8 5 12 12 C 1.40119 * 120.34988 * 359.72310 * 11 9 8 13 13 N 1.31261 * 121.15024 * 179.97438 * 12 11 9 14 14 C 1.32723 * 121.79816 * 0.02562 * 13 12 11 15 15 C 1.40776 * 120.68015 * 0.02562 * 14 13 12 16 16 C 1.39432 * 120.35252 * 179.45274 * 11 9 8 17 17 N 1.35339 * 107.75375 * 179.97438 * 15 14 13 18 18 N 1.28658 * 109.99951 * 359.97438 * 17 15 14 19 19 N 1.37116 * 133.40063 * 179.97438 * 14 13 12 20 20 C 1.46504 * 126.59534 * 0.02562 * 19 14 13 21 21 N 1.46499 * 109.47193 * 240.00521 * 2 1 3 22 22 C 1.36940 * 120.00319 * 84.99477 * 21 2 1 23 23 H 1.08000 * 119.99514 * 0.02562 * 22 21 2 24 24 C 1.38807 * 120.00200 * 179.97438 * 22 21 2 25 25 N 1.31616 * 120.00111 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 120.00068 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.46942 * 89.99513 * 26 24 22 28 28 H 1.48498 * 109.47030 * 209.99967 * 26 24 22 29 29 H 1.48499 * 109.46779 * 329.99579 * 26 24 22 30 30 H 1.09005 * 109.47162 * 59.99407 * 1 2 3 31 31 H 1.08994 * 109.47486 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46972 * 300.00253 * 1 2 3 33 33 H 1.09000 * 109.46867 * 65.00027 * 4 2 1 34 34 H 1.09000 * 109.47154 * 305.00161 * 4 2 1 35 35 H 1.09001 * 109.47135 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.47409 * 300.00719 * 7 5 4 37 37 H 1.09007 * 109.46569 * 60.00291 * 7 5 4 38 38 H 0.97000 * 120.00410 * 25.00192 * 8 5 4 39 39 H 1.07995 * 119.42475 * 359.97438 * 12 11 9 40 40 H 1.07999 * 120.95069 * 0.02562 * 16 11 9 41 41 H 1.09004 * 109.46958 * 89.99611 * 20 19 14 42 42 H 1.08996 * 109.47349 * 210.00045 * 20 19 14 43 43 H 1.08999 * 109.46943 * 329.99894 * 20 19 14 44 44 H 0.97002 * 119.99674 * 265.00265 * 21 2 1 45 45 H 0.97009 * 120.00222 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4923 8 7 3.9479 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9375 0.4322 0.5720 11 6 5.5499 2.6265 1.2726 12 6 4.6608 3.5333 1.8645 13 7 4.9900 4.7921 2.0377 14 6 6.1726 5.2637 1.6627 15 6 7.1239 4.4196 1.0592 16 6 6.8075 3.0706 0.8660 17 7 8.2212 5.1633 0.7861 18 7 8.0337 6.3791 1.1630 19 7 6.7555 6.5032 1.7253 20 6 6.1575 7.7229 2.2739 21 7 2.0183 -0.6905 -1.1962 22 6 2.1491 -0.0073 -2.3758 23 1 1.8925 1.0406 -2.4241 24 6 2.6123 -0.6615 -3.5091 25 7 2.7384 -0.0047 -4.6427 26 14 3.0567 -2.4739 -3.4253 27 1 1.8596 -3.2924 -3.7452 28 1 4.1325 -2.7657 -4.4065 29 1 3.5313 -2.8044 -2.0575 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -1.7715 1.2055 34 1 1.6054 -0.2618 2.1370 35 1 5.1715 -1.3611 2.5385 36 1 3.6546 -1.0595 3.4192 37 1 3.8001 -2.4820 2.3592 38 1 3.3285 1.4128 1.9028 39 1 3.6877 3.1907 2.1838 40 1 7.5150 2.3937 0.4104 41 1 6.3938 7.7977 3.3354 42 1 6.5579 8.5911 1.7504 43 1 5.0759 7.6873 2.1440 44 1 2.2490 -1.6317 -1.1527 45 1 3.0624 -0.4618 -5.4346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135061844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:41 Heat of formation + Delta-G solvation = 77.807881 kcal Electronic energy + Delta-G solvation = -28407.606302 eV Core-core repulsion = 24461.849462 eV Total energy + Delta-G solvation = -3945.756839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.53761 -41.21591 -39.48365 -38.33327 -36.18733 -35.97768 -34.11128 -33.41438 -32.71099 -31.36748 -30.76160 -28.70507 -27.54264 -26.21086 -25.45736 -25.24081 -22.77234 -22.62796 -21.90977 -21.28402 -19.96223 -19.54439 -19.08549 -18.07577 -17.63249 -17.34436 -16.92914 -16.54735 -16.09488 -15.81945 -15.28269 -15.17722 -15.01586 -14.66725 -14.55975 -14.39035 -14.27691 -14.09153 -14.00316 -13.93164 -13.68359 -13.37141 -13.20274 -12.96019 -12.81366 -12.74889 -12.57320 -12.35131 -12.09339 -11.94801 -11.81674 -11.62474 -11.38257 -11.37742 -10.92454 -10.72091 -10.49115 -10.20383 -9.91446 -9.22118 -7.98026 -5.27450 -0.99674 -0.57091 0.67760 0.83949 1.36511 1.41356 1.47024 1.66678 2.01136 2.51531 2.52388 2.61026 2.95685 3.04989 3.35782 3.37692 3.51645 3.69532 3.72248 3.90015 4.09258 4.17540 4.29897 4.31891 4.42475 4.58278 4.60383 4.61105 4.69009 4.74616 4.84919 4.88232 4.90651 4.97855 5.08444 5.15899 5.25511 5.28563 5.41052 5.44261 5.61984 5.68047 5.84811 6.25423 6.27139 6.54363 6.57908 7.15851 7.23947 7.95729 8.09950 9.24255 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003225 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.551074 B = 8680.545129 C = 9272.837927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.164 3.836 3 H 0.048 0.952 4 C -0.122 4.122 5 C 0.141 3.859 6 H 0.052 0.948 7 C -0.153 4.153 8 N -0.694 5.694 9 C 0.568 3.432 10 O -0.575 6.575 11 C -0.203 4.203 12 C 0.227 3.773 13 N -0.481 5.481 14 C 0.277 3.723 15 C -0.090 4.090 16 C 0.071 3.929 17 N -0.224 5.224 18 N 0.000 5.000 19 N -0.375 5.375 20 C 0.089 3.911 21 N -0.749 5.749 22 C -0.209 4.209 23 H 0.055 0.945 24 C -0.070 4.070 25 N -0.989 5.989 26 Si 0.946 3.054 27 H -0.277 1.277 28 H -0.307 1.307 29 H -0.252 1.252 30 H 0.023 0.977 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.415 0.585 39 H 0.221 0.779 40 H 0.155 0.845 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.362 0.638 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 9.764 24.639 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.066 0.934 4 C -0.160 4.160 5 C 0.037 3.963 6 H 0.070 0.930 7 C -0.211 4.211 8 N -0.346 5.346 9 C 0.354 3.646 10 O -0.455 6.455 11 C -0.212 4.212 12 C 0.053 3.947 13 N -0.195 5.195 14 C 0.034 3.966 15 C -0.217 4.217 16 C 0.040 3.960 17 N -0.103 5.103 18 N 0.018 4.982 19 N -0.172 5.172 20 C -0.050 4.050 21 N -0.393 5.393 22 C -0.340 4.340 23 H 0.073 0.927 24 C -0.260 4.260 25 N -0.641 5.641 26 Si 0.775 3.225 27 H -0.203 1.203 28 H -0.235 1.235 29 H -0.177 1.177 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.253 0.747 39 H 0.237 0.763 40 H 0.173 0.827 41 H 0.124 0.876 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.194 0.806 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.665 10.912 24.239 26.634 hybrid contribution 0.130 -1.595 -1.169 1.982 sum 1.795 9.317 23.070 24.946 Atomic orbital electron populations 1.22300 0.97350 1.01303 1.00851 1.20570 0.92782 0.95678 0.85270 0.93354 1.22171 0.92374 1.02896 0.98547 1.20995 0.95941 0.80498 0.98873 0.93014 1.22108 1.00560 1.00312 0.98163 1.45693 1.15441 1.12036 1.61427 1.17910 0.82588 0.86456 0.77597 1.90806 1.52802 1.56912 1.44998 1.20719 0.96422 0.95779 1.08243 1.23638 0.98911 0.84934 0.87260 1.66793 1.14400 1.16395 1.21932 1.19757 0.92305 0.87609 0.96976 1.20506 0.93872 0.96858 1.10431 1.21125 0.95338 0.91254 0.88261 1.74845 1.21920 0.98551 1.15018 1.81661 0.95550 1.11622 1.09328 1.50372 1.11637 1.08295 1.46858 1.22568 1.00095 0.81345 1.00962 1.42859 1.79732 1.09474 1.07221 1.18970 1.33582 0.94167 0.87311 0.92670 1.25413 1.03102 1.02017 0.95515 1.69880 1.55585 1.37473 1.01193 0.85518 0.77388 0.81738 0.77840 1.20346 1.23455 1.17670 0.95804 0.93222 0.89962 0.89574 0.86437 0.94271 0.89530 0.90878 0.74674 0.76276 0.82706 0.87636 0.86475 0.87095 0.80553 0.93864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 9.49 71.98 0.68 -3.73 16 2 C 0.16 5.07 2.84 44.99 0.13 5.20 16 3 H 0.05 1.55 7.56 -2.38 -0.02 1.54 16 4 C -0.12 -2.53 4.29 30.59 0.13 -2.40 16 5 C 0.14 3.53 2.52 44.99 0.11 3.64 16 6 H 0.05 1.88 7.05 -2.39 -0.02 1.86 16 7 C -0.15 -3.01 9.48 71.98 0.68 -2.33 16 8 N -0.69 -15.34 4.40 -445.52 -1.96 -17.30 16 9 C 0.57 16.54 7.74 86.75 0.67 17.21 16 10 O -0.58 -22.65 16.06 -3.95 -0.06 -22.71 16 11 C -0.20 -4.95 5.88 -20.03 -0.12 -5.07 16 12 C 0.23 4.02 10.69 85.23 0.91 4.93 16 13 N -0.48 -9.80 10.37 -191.98 -1.99 -11.79 16 14 C 0.28 6.65 8.05 134.00 1.08 7.73 16 15 C -0.09 -2.52 7.27 39.63 0.29 -2.23 16 16 C 0.07 1.97 9.75 22.96 0.22 2.19 16 17 N -0.22 -6.60 12.40 -52.14 -0.65 -7.25 16 18 N 0.00 -0.01 13.71 37.02 0.51 0.50 16 19 N -0.37 -7.74 4.10 -366.45 -1.50 -9.25 16 20 C 0.09 0.83 11.54 127.77 1.47 2.30 16 21 N -0.75 -32.56 4.30 -322.94 -1.39 -33.95 16 22 C -0.21 -11.68 10.41 84.03 0.87 -10.81 16 23 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 24 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 25 N -0.99 -65.25 13.97 21.65 0.30 -64.95 16 26 Si 0.95 47.13 27.74 68.60 1.90 49.03 16 27 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.31 -15.95 7.11 99.48 0.71 -15.25 16 29 H -0.25 -11.38 6.52 99.48 0.65 -10.73 16 30 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.41 5.43 6.64 -92.71 -0.62 4.82 16 39 H 0.22 1.75 6.39 -2.91 -0.02 1.73 16 40 H 0.16 4.47 7.71 -2.91 -0.02 4.45 16 41 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.36 15.49 5.66 -92.71 -0.52 14.97 16 45 H 0.25 16.08 8.31 -92.70 -0.77 15.31 16 Total: -1.00 -85.72 380.18 2.61 -83.10 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -0.16 Total: 21.64 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 7.61 Total: 12.92 kcal Atomic # 7 Polarization: -137.30 SS G_CDS: -6.68 Total: -143.98 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.06 Total: -22.71 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.03 kcal Total: -85.72 2.61 -83.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135061844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.913 kcal (2) G-P(sol) polarization free energy of solvation -85.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds