Wall clock time and date at job start Tue Mar 31 2020 18:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00121 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00072 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99871 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21571 * 119.99859 * 0.02562 * 18 17 2 20 20 C 1.47718 * 120.00073 * 180.02562 * 18 17 2 21 21 C 1.40115 * 120.35279 * 359.97438 * 20 18 17 22 22 N 1.31253 * 121.15024 * 179.97438 * 21 20 18 23 23 C 1.32719 * 121.80482 * 0.02719 * 22 21 20 24 24 C 1.40776 * 120.67902 * 359.97438 * 23 22 21 25 25 C 1.39436 * 120.35044 * 179.72454 * 20 18 17 26 26 N 1.35327 * 107.76140 * 180.02562 * 24 23 22 27 27 N 1.28666 * 109.99673 * 0.02562 * 26 24 23 28 28 N 1.37120 * 133.40818 * 179.97438 * 23 22 21 29 29 C 1.46497 * 126.58879 * 359.97438 * 28 23 22 30 30 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 32 32 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 33 33 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 34 34 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 35 35 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 36 36 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 37 37 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 38 38 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 39 39 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 41 41 H 1.07998 * 119.41962 * 359.97438 * 21 20 18 42 42 H 1.08005 * 120.95196 * 359.97438 * 25 20 18 43 43 H 1.09003 * 109.46873 * 90.00127 * 29 28 23 44 44 H 1.09003 * 109.47130 * 209.99670 * 29 28 23 45 45 H 1.09001 * 109.47294 * 330.00600 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 7.4946 -0.1451 3.0435 15 1 8.3096 -2.3787 2.5670 16 1 8.4552 -0.6482 0.8744 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8575 1.1611 2.4118 20 6 2.6398 -0.7147 3.5632 21 6 2.9750 -2.0740 3.5086 22 7 3.4148 -2.7080 4.5704 23 6 3.5618 -2.0966 5.7392 24 6 3.2476 -0.7316 5.8804 25 6 2.7812 -0.0248 4.7666 26 7 3.4926 -0.3823 7.1646 27 7 3.9262 -1.3996 7.8223 28 7 3.9901 -2.5134 6.9734 29 6 4.4306 -3.8629 7.3350 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6055 -0.2618 -2.1369 34 1 1.7516 -1.7715 -1.2056 35 1 3.6264 -0.6888 -3.4656 36 1 5.1509 -1.1487 -2.6696 37 1 3.7722 -2.2743 -2.6698 38 1 3.6646 -2.0586 0.2387 39 1 5.6745 -3.1228 2.6790 40 1 2.2489 -1.6319 1.1527 41 1 2.8697 -2.6094 2.5766 42 1 2.5348 1.0244 4.8378 43 1 5.5050 -3.9499 7.1733 44 1 4.2048 -4.0497 8.3849 45 1 3.9098 -4.5933 6.7157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135061845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:46 Heat of formation + Delta-G solvation = 107.607780 kcal Electronic energy + Delta-G solvation = -29774.401941 eV Core-core repulsion = 25829.937323 eV Total energy + Delta-G solvation = -3944.464619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96880 -39.66957 -37.90117 -36.79477 -34.61387 -34.27938 -32.49579 -31.80537 -31.04233 -29.78220 -28.58791 -27.49907 -26.40309 -24.62514 -23.86275 -23.68990 -21.37864 -21.13461 -20.40868 -19.93195 -18.20179 -17.54961 -17.30297 -16.50761 -16.15711 -15.86651 -15.42430 -14.88830 -14.50175 -14.00179 -13.91315 -13.61860 -13.54508 -13.43231 -13.03366 -12.88166 -12.79287 -12.70669 -12.43085 -12.23267 -12.18572 -11.97640 -11.81597 -11.72329 -11.41807 -11.10704 -10.91653 -10.82183 -10.66827 -10.44455 -10.32671 -10.00622 -9.81729 -9.68959 -9.10667 -9.00935 -8.82278 -8.62632 -8.40657 -7.05570 -5.94058 -3.15515 0.58979 1.08640 2.05250 2.42532 3.28490 3.35642 3.41503 3.44720 3.56832 4.12685 4.20454 4.41394 4.49453 4.65113 4.93340 5.00223 5.14278 5.15267 5.23515 5.34516 5.40111 5.42889 5.46094 5.56934 5.62068 5.76539 5.82583 5.90047 5.94639 6.01557 6.07276 6.17126 6.25352 6.31797 6.37512 6.45944 6.49815 6.52842 6.77914 6.78253 6.97191 7.05010 7.59574 7.97222 8.02561 8.14753 8.26760 8.73010 9.38474 9.89553 10.25355 11.28384 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.005099 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.693540 B = 5489.631768 C = 7026.046863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.086 0.914 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.050 0.950 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.216 4.216 10 H 0.069 0.931 11 C -0.011 4.011 12 N -0.923 5.923 13 Si 0.896 3.104 14 H -0.293 1.293 15 H -0.293 1.293 16 H -0.283 1.283 17 N -0.692 5.692 18 C 0.583 3.417 19 O -0.555 6.555 20 C -0.202 4.202 21 C 0.267 3.733 22 N -0.485 5.485 23 C 0.295 3.705 24 C -0.092 4.092 25 C 0.071 3.929 26 N -0.201 5.201 27 N -0.013 5.013 28 N -0.393 5.393 29 C 0.107 3.893 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.376 0.624 39 H 0.259 0.741 40 H 0.403 0.597 41 H 0.183 0.817 42 H 0.155 0.845 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.580 -2.535 0.776 8.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.104 0.896 4 C -0.173 4.173 5 C 0.058 3.942 6 H 0.068 0.932 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.347 4.347 10 H 0.087 0.913 11 C -0.207 4.207 12 N -0.572 5.572 13 Si 0.728 3.272 14 H -0.221 1.221 15 H -0.219 1.219 16 H -0.209 1.209 17 N -0.344 5.344 18 C 0.370 3.630 19 O -0.435 6.435 20 C -0.211 4.211 21 C 0.093 3.907 22 N -0.200 5.200 23 C 0.052 3.948 24 C -0.219 4.219 25 C 0.040 3.960 26 N -0.081 5.081 27 N 0.007 4.993 28 N -0.190 5.190 29 C -0.035 4.035 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.211 0.789 39 H 0.070 0.930 40 H 0.241 0.759 41 H 0.199 0.801 42 H 0.173 0.827 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.079 -2.107 2.297 8.660 hybrid contribution 1.121 -0.205 -0.383 1.202 sum -6.959 -2.312 1.915 7.579 Atomic orbital electron populations 1.22216 0.96064 1.01764 1.02114 1.20849 0.92624 0.97805 0.84149 0.89615 1.22223 0.97707 1.00716 0.96649 1.20318 0.89754 0.95975 0.88120 0.93223 1.22407 1.01552 1.00380 0.98002 1.42481 1.18649 1.39851 1.34839 1.19250 0.93086 1.12636 1.09715 0.91345 1.24499 0.98370 0.98887 0.98931 1.69397 1.37691 1.24242 1.25897 0.86334 0.84769 0.77255 0.78806 1.22090 1.21941 1.20882 1.45857 1.65686 1.14263 1.08606 1.17551 0.76791 0.85973 0.82721 1.90713 1.51932 1.15461 1.85396 1.20763 1.08992 0.96474 0.94868 1.23059 0.83354 0.89884 0.94396 1.66714 1.18062 1.38950 0.96281 1.19676 0.95951 0.90770 0.88422 1.20263 1.13613 0.94163 0.93825 1.20905 0.87442 1.00016 0.87671 1.74718 1.09937 1.19921 1.03554 1.81607 1.16171 0.87451 1.14117 1.49770 1.52440 1.11203 1.05622 1.21959 1.01424 0.77246 1.02841 0.92699 0.92262 0.92022 0.90602 0.91605 0.94508 0.92866 0.93547 0.78913 0.93038 0.75889 0.80087 0.82734 0.90230 0.89000 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.48 37.16 0.35 -1.59 16 2 C 0.15 2.16 2.57 -67.93 -0.17 1.98 16 3 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.13 -1.77 4.43 -26.73 -0.12 -1.89 16 5 C 0.17 2.82 2.89 -67.93 -0.20 2.62 16 6 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 7 C -0.16 -2.56 9.49 37.16 0.35 -2.21 16 8 N -0.72 -14.54 3.84 -53.42 -0.21 -14.75 16 9 C -0.22 -5.22 9.93 -15.06 -0.15 -5.37 16 10 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 11 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 12 N -0.92 -22.64 10.69 55.49 0.59 -22.04 16 13 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 14 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 N -0.69 -11.13 3.75 -54.79 -0.21 -11.34 16 18 C 0.58 10.79 7.74 -12.39 -0.10 10.69 16 19 O -0.56 -11.47 16.06 5.30 0.09 -11.38 16 20 C -0.20 -3.71 5.88 -104.87 -0.62 -4.33 16 21 C 0.27 4.84 8.98 -17.09 -0.15 4.69 16 22 N -0.49 -9.05 10.37 -12.04 -0.12 -9.17 16 23 C 0.30 5.47 8.05 -155.93 -1.26 4.21 16 24 C -0.09 -1.74 7.27 -84.74 -0.62 -2.36 16 25 C 0.07 1.29 9.76 -38.51 -0.38 0.91 16 26 N -0.20 -3.74 12.40 32.17 0.40 -3.34 16 27 N -0.01 -0.22 13.71 60.35 0.83 0.61 16 28 N -0.39 -6.39 4.10 -67.18 -0.28 -6.67 16 29 C 0.11 1.19 11.54 59.85 0.69 1.88 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.38 7.65 5.70 -40.82 -0.23 7.42 16 39 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 40 H 0.40 6.35 4.54 -40.82 -0.19 6.16 16 41 H 0.18 3.20 5.82 -52.49 -0.31 2.89 16 42 H 0.16 2.63 7.71 -52.48 -0.40 2.22 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -28.82 374.46 -6.88 -35.69 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.14 Total: 11.25 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -2.45 Total: 8.86 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: 1.01 Total: -66.70 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.82 -6.88 -35.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135061845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.303 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds