Wall clock time and date at job start Tue Mar 31 2020 18:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47441 * 2 1 4 4 C 1.53002 * 109.46727 * 239.99618 * 2 1 3 5 5 C 1.53006 * 109.46901 * 175.00320 * 4 2 1 6 6 H 1.09000 * 109.47054 * 54.99965 * 5 4 2 7 7 C 1.53001 * 109.46964 * 175.00500 * 5 4 2 8 8 N 1.46498 * 109.47128 * 295.00133 * 5 4 2 9 9 C 1.34773 * 120.00045 * 154.99807 * 8 5 4 10 10 O 1.21544 * 119.99954 * 0.02562 * 9 8 5 11 11 C 1.47876 * 120.00240 * 180.02562 * 9 8 5 12 12 C 1.39454 * 121.11581 * 0.02562 * 11 9 8 13 13 C 1.38614 * 119.37712 * 180.02562 * 12 11 9 14 14 N 1.31580 * 121.63578 * 359.97438 * 13 12 11 15 15 C 1.32209 * 121.86884 * 0.02562 * 14 13 12 16 16 C 1.40867 * 121.11498 * 180.02562 * 11 9 8 17 17 N 1.34396 * 135.15087 * 359.94704 * 16 11 9 18 18 N 1.28694 * 109.15194 * 180.02562 * 17 16 11 19 19 N 1.28773 * 111.75956 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.86871 * 179.97438 * 19 18 17 21 21 N 1.46498 * 109.46767 * 120.00534 * 2 1 3 22 22 C 1.36934 * 119.99538 * 274.99473 * 21 2 1 23 23 H 1.08001 * 120.00801 * 359.97438 * 22 21 2 24 24 C 1.38814 * 119.99950 * 180.02562 * 22 21 2 25 25 N 1.31620 * 120.00210 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00129 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47074 * 59.99725 * 26 24 22 28 28 H 1.48495 * 109.47026 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46931 * 299.99940 * 26 24 22 30 30 H 1.09004 * 109.46804 * 300.00332 * 1 2 3 31 31 H 1.09007 * 109.47100 * 59.99660 * 1 2 3 32 32 H 1.08991 * 109.47441 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47211 * 55.00695 * 4 2 1 34 34 H 1.08994 * 109.47893 * 295.00468 * 4 2 1 35 35 H 1.09008 * 109.46841 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47142 * 299.99391 * 7 5 4 37 37 H 1.08993 * 109.47148 * 60.00244 * 7 5 4 38 38 H 0.97002 * 120.00537 * 335.00336 * 8 5 4 39 39 H 1.07999 * 120.30915 * 0.02562 * 12 11 9 40 40 H 1.07999 * 119.18021 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.47175 * 90.02334 * 20 19 18 42 42 H 1.08998 * 109.46959 * 210.02038 * 20 19 18 43 43 H 1.08994 * 109.46997 * 330.02168 * 20 19 18 44 44 H 0.97003 * 120.00413 * 94.99682 * 21 2 1 45 45 H 0.96993 * 120.00176 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 6 4.0851 -1.4385 -2.4925 8 7 3.9480 0.7891 -1.4925 9 6 5.1612 1.2132 -1.0867 10 8 5.9376 0.4319 -0.5729 11 6 5.5479 2.6292 -1.2667 12 6 4.6753 3.5456 -1.8528 13 6 5.0751 4.8641 -2.0043 14 7 6.2603 5.2758 -1.6079 15 6 7.1319 4.4561 -1.0455 16 6 6.8100 3.0975 -0.8517 17 7 7.8864 2.5446 -0.2670 18 7 8.7899 3.4470 -0.1068 19 7 8.4025 4.5938 -0.5459 20 6 9.1840 5.8326 -0.5174 21 7 2.0183 -0.6907 1.1961 22 6 2.1491 -0.0076 2.3757 23 1 1.8927 1.0404 2.4242 24 6 2.6122 -0.6619 3.5090 25 7 2.9251 -1.9390 3.4499 26 14 2.7900 0.2698 5.1183 27 1 1.4673 0.8057 5.5288 28 1 3.3001 -0.6483 6.1680 29 1 3.7445 1.3929 4.9372 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6054 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2057 35 1 5.1715 -1.3620 -2.5382 36 1 3.8000 -2.4821 -2.3595 37 1 3.6546 -1.0595 -3.4193 38 1 3.3286 1.4127 -1.9028 39 1 3.6972 3.2309 -2.1855 40 1 4.3967 5.5712 -2.4583 41 1 9.7652 5.9168 -1.4357 42 1 8.5103 6.6854 -0.4344 43 1 9.8580 5.8173 0.3391 44 1 2.2489 -1.6319 1.1526 45 1 3.2491 -2.3961 4.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135287780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:55 Heat of formation + Delta-G solvation = 110.790282 kcal Electronic energy + Delta-G solvation = -28767.239996 eV Core-core repulsion = 24822.913381 eV Total energy + Delta-G solvation = -3944.326615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.48778 -39.99162 -38.77689 -36.82396 -35.17100 -34.46586 -32.90134 -31.96956 -30.99501 -30.34957 -28.56231 -28.17801 -26.33017 -25.71459 -23.88511 -23.58910 -22.92144 -20.94871 -20.30965 -19.72328 -19.02058 -17.90810 -17.60255 -17.14373 -17.08736 -15.85237 -15.44972 -14.94923 -14.89376 -14.58372 -14.11859 -13.91838 -13.88816 -13.61617 -13.42293 -13.20328 -13.05848 -12.86549 -12.67322 -12.35931 -12.13643 -11.99189 -11.71692 -11.63361 -11.58968 -11.23753 -10.99570 -10.77600 -10.59183 -10.41128 -10.21821 -10.16306 -9.88238 -9.57291 -9.49221 -9.41806 -9.11524 -8.82885 -8.72279 -6.87509 -5.67939 -2.95919 -0.07010 0.68769 1.71644 2.11080 2.87845 3.13392 3.46740 3.49439 3.54696 3.55163 3.64247 4.04822 4.16177 4.37613 4.39535 4.66969 4.67738 4.70597 4.96710 5.03662 5.12940 5.32769 5.37276 5.42328 5.49429 5.60046 5.66453 5.71284 5.89933 5.93828 5.96285 6.02849 6.14300 6.15822 6.30339 6.38271 6.45331 6.58269 6.70707 6.80170 6.92903 7.09161 7.26497 7.70108 7.76210 8.11208 8.44765 8.50534 9.61854 10.18798 10.52626 11.54738 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.003910 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.191690 B = 7158.748840 C = 8434.618938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.707 5.707 9 C 0.549 3.451 10 O -0.490 6.490 11 C 0.001 3.999 12 C -0.146 4.146 13 C 0.158 3.842 14 N -0.461 5.461 15 C 0.208 3.792 16 C 0.004 3.996 17 N -0.208 5.208 18 N -0.008 5.008 19 N -0.313 5.313 20 C 0.092 3.908 21 N -0.720 5.720 22 C -0.237 4.237 23 H 0.066 0.934 24 C -0.009 4.009 25 N -0.930 5.930 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.288 1.288 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.393 0.607 39 H 0.157 0.843 40 H 0.181 0.819 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 15.582 -17.459 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.041 3.959 6 H 0.126 0.874 7 C -0.220 4.220 8 N -0.360 5.360 9 C 0.333 3.667 10 O -0.363 6.363 11 C -0.016 4.016 12 C -0.170 4.170 13 C -0.015 4.015 14 N -0.175 5.175 15 C -0.034 4.034 16 C -0.126 4.126 17 N -0.082 5.082 18 N 0.011 4.989 19 N -0.114 5.114 20 C -0.048 4.048 21 N -0.362 5.362 22 C -0.368 4.368 23 H 0.084 0.916 24 C -0.205 4.205 25 N -0.578 5.578 26 Si 0.732 3.268 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.215 1.215 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.227 0.773 39 H 0.175 0.825 40 H 0.198 0.802 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.324 15.214 -16.296 23.174 hybrid contribution -1.160 0.484 0.469 1.341 sum 5.165 15.698 -15.828 22.883 Atomic orbital electron populations 1.22464 0.99545 1.00830 0.99729 1.20222 0.91573 0.95497 0.86587 0.93719 1.22180 0.93516 1.02411 0.98844 1.21097 0.95242 0.79433 1.00155 0.87367 1.22188 1.01647 1.00255 0.97877 1.45842 1.15754 1.12018 1.62367 1.17788 0.82902 0.86258 0.79749 1.90905 1.50441 1.54750 1.40168 1.19832 0.90578 0.95422 0.95719 1.22371 1.00667 0.94053 0.99918 1.22775 0.90453 0.94234 0.93999 1.66247 1.02606 1.37285 1.11327 1.19788 0.89207 0.91854 1.02527 1.20142 0.96218 0.92208 1.04023 1.75611 0.97854 1.20526 1.14254 1.78291 1.21111 0.87106 1.12439 1.47028 1.10295 1.10629 1.43483 1.22257 0.96363 0.80956 1.05250 1.42380 1.77992 1.10559 1.05237 1.19083 1.36723 0.93599 0.87375 0.91633 1.24674 1.02072 0.95907 0.97888 1.69624 1.50711 1.08584 1.28908 0.86362 0.77581 0.78787 0.84028 1.21414 1.21660 1.21459 0.92925 0.94731 0.93521 0.91971 0.90434 0.92429 0.91560 0.93076 0.77275 0.82533 0.80239 0.89195 0.88019 0.87803 0.78303 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.17 3.15 2.84 -67.93 -0.19 2.95 16 3 H 0.04 0.83 7.56 -51.93 -0.39 0.44 16 4 C -0.13 -1.90 4.29 -26.73 -0.11 -2.02 16 5 C 0.14 2.29 2.52 -67.93 -0.17 2.11 16 6 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 7 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 8 N -0.71 -10.05 4.41 -54.74 -0.24 -10.29 16 9 C 0.55 9.58 7.76 -12.32 -0.10 9.48 16 10 O -0.49 -11.02 15.93 5.33 0.08 -10.94 16 11 C 0.00 0.01 5.92 -104.51 -0.62 -0.60 16 12 C -0.15 -1.38 9.61 -38.99 -0.37 -1.76 16 13 C 0.16 1.32 11.14 -17.52 -0.20 1.13 16 14 N -0.46 -5.19 10.35 -12.39 -0.13 -5.32 16 15 C 0.21 2.88 8.08 -156.20 -1.26 1.61 16 16 C 0.00 0.06 6.97 -84.72 -0.59 -0.53 16 17 N -0.21 -3.94 11.92 32.23 0.38 -3.55 16 18 N -0.01 -0.12 13.07 60.35 0.79 0.67 16 19 N -0.31 -3.94 3.79 -67.23 -0.26 -4.19 16 20 C 0.09 0.60 11.41 59.85 0.68 1.29 16 21 N -0.72 -17.60 4.49 -53.43 -0.24 -17.84 16 22 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 26 Si 0.90 23.40 29.55 -169.99 -5.02 18.37 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 29 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.39 4.03 6.75 -40.82 -0.28 3.76 16 39 H 0.16 0.88 6.53 -52.49 -0.34 0.53 16 40 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 45 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -38.75 382.30 -6.93 -45.68 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.31 Total: 7.45 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.47 Total: 2.27 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: 1.03 Total: -68.61 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.75 -6.93 -45.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135287780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.474 kcal (2) G-P(sol) polarization free energy of solvation -38.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds