Wall clock time and date at job start Tue Mar 31 2020 18:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47441 * 2 1 4 4 C 1.53002 * 109.46727 * 239.99618 * 2 1 3 5 5 C 1.53006 * 109.46901 * 175.00320 * 4 2 1 6 6 H 1.09000 * 109.47054 * 54.99965 * 5 4 2 7 7 C 1.53001 * 109.46964 * 175.00500 * 5 4 2 8 8 N 1.46498 * 109.47128 * 295.00133 * 5 4 2 9 9 C 1.34773 * 120.00045 * 154.99807 * 8 5 4 10 10 O 1.21544 * 119.99954 * 0.02562 * 9 8 5 11 11 C 1.47876 * 120.00240 * 180.02562 * 9 8 5 12 12 C 1.39454 * 121.11581 * 0.02562 * 11 9 8 13 13 C 1.38614 * 119.37712 * 180.02562 * 12 11 9 14 14 N 1.31580 * 121.63578 * 359.97438 * 13 12 11 15 15 C 1.32209 * 121.86884 * 0.02562 * 14 13 12 16 16 C 1.40867 * 121.11498 * 180.02562 * 11 9 8 17 17 N 1.34396 * 135.15087 * 359.94704 * 16 11 9 18 18 N 1.28694 * 109.15194 * 180.02562 * 17 16 11 19 19 N 1.28773 * 111.75956 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.86871 * 179.97438 * 19 18 17 21 21 N 1.46498 * 109.46767 * 120.00534 * 2 1 3 22 22 C 1.36934 * 119.99538 * 274.99473 * 21 2 1 23 23 H 1.08001 * 120.00801 * 359.97438 * 22 21 2 24 24 C 1.38814 * 119.99950 * 180.02562 * 22 21 2 25 25 N 1.31620 * 120.00210 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00129 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47074 * 59.99725 * 26 24 22 28 28 H 1.48495 * 109.47026 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46931 * 299.99940 * 26 24 22 30 30 H 1.09004 * 109.46804 * 300.00332 * 1 2 3 31 31 H 1.09007 * 109.47100 * 59.99660 * 1 2 3 32 32 H 1.08991 * 109.47441 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47211 * 55.00695 * 4 2 1 34 34 H 1.08994 * 109.47893 * 295.00468 * 4 2 1 35 35 H 1.09008 * 109.46841 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47142 * 299.99391 * 7 5 4 37 37 H 1.08993 * 109.47148 * 60.00244 * 7 5 4 38 38 H 0.97002 * 120.00537 * 335.00336 * 8 5 4 39 39 H 1.07999 * 120.30915 * 0.02562 * 12 11 9 40 40 H 1.07999 * 119.18021 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.47175 * 90.02334 * 20 19 18 42 42 H 1.08998 * 109.46959 * 210.02038 * 20 19 18 43 43 H 1.08994 * 109.46997 * 330.02168 * 20 19 18 44 44 H 0.97003 * 120.00413 * 94.99682 * 21 2 1 45 45 H 0.96993 * 120.00176 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 6 4.0851 -1.4385 -2.4925 8 7 3.9480 0.7891 -1.4925 9 6 5.1612 1.2132 -1.0867 10 8 5.9376 0.4319 -0.5729 11 6 5.5479 2.6292 -1.2667 12 6 4.6753 3.5456 -1.8528 13 6 5.0751 4.8641 -2.0043 14 7 6.2603 5.2758 -1.6079 15 6 7.1319 4.4561 -1.0455 16 6 6.8100 3.0975 -0.8517 17 7 7.8864 2.5446 -0.2670 18 7 8.7899 3.4470 -0.1068 19 7 8.4025 4.5938 -0.5459 20 6 9.1840 5.8326 -0.5174 21 7 2.0183 -0.6907 1.1961 22 6 2.1491 -0.0076 2.3757 23 1 1.8927 1.0404 2.4242 24 6 2.6122 -0.6619 3.5090 25 7 2.9251 -1.9390 3.4499 26 14 2.7900 0.2698 5.1183 27 1 1.4673 0.8057 5.5288 28 1 3.3001 -0.6483 6.1680 29 1 3.7445 1.3929 4.9372 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6054 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2057 35 1 5.1715 -1.3620 -2.5382 36 1 3.8000 -2.4821 -2.3595 37 1 3.6546 -1.0595 -3.4193 38 1 3.3286 1.4127 -1.9028 39 1 3.6972 3.2309 -2.1855 40 1 4.3967 5.5712 -2.4583 41 1 9.7652 5.9168 -1.4357 42 1 8.5103 6.6854 -0.4344 43 1 9.8580 5.8173 0.3391 44 1 2.2489 -1.6319 1.1526 45 1 3.2491 -2.3961 4.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135287780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:54 Heat of formation + Delta-G solvation = 80.016966 kcal Electronic energy + Delta-G solvation = -28768.574427 eV Core-core repulsion = 24822.913381 eV Total energy + Delta-G solvation = -3945.661046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.48549 -41.16626 -39.79189 -38.28272 -36.19092 -36.01103 -34.22277 -33.57491 -31.96021 -31.57765 -30.37462 -28.92696 -27.56353 -26.71266 -25.64948 -24.80827 -24.03529 -22.19126 -21.45809 -21.18534 -20.00589 -19.29095 -18.81681 -18.54223 -18.10908 -17.13732 -16.63484 -16.44497 -16.04731 -15.68984 -15.62153 -15.43234 -15.11964 -14.68695 -14.48470 -14.22908 -14.13932 -14.06631 -13.71500 -13.57593 -13.42261 -13.32859 -13.16815 -12.92252 -12.75864 -12.65151 -12.58921 -12.28397 -12.21881 -12.12242 -11.79201 -11.55008 -11.38241 -11.34335 -10.89847 -10.59623 -10.32836 -10.19315 -9.93004 -8.92617 -7.91911 -5.16031 -1.04114 -0.17512 0.91291 1.00095 1.38856 1.43296 1.47592 1.79641 2.00167 2.55296 2.58124 2.62336 3.18158 3.21736 3.43070 3.46197 3.63688 3.84956 4.02688 4.05395 4.17015 4.23302 4.26752 4.40189 4.44408 4.52822 4.58405 4.59537 4.72087 4.78889 4.84068 4.87493 4.99055 5.08744 5.11018 5.16393 5.26582 5.38348 5.39196 5.45692 5.51652 5.64476 5.70568 6.31987 6.41742 6.57088 7.05621 7.27445 7.37620 8.20429 8.37638 9.31987 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.003910 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.191690 B = 7158.748840 C = 8434.618938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.161 3.839 3 H 0.047 0.953 4 C -0.116 4.116 5 C 0.146 3.854 6 H 0.043 0.957 7 C -0.151 4.151 8 N -0.687 5.687 9 C 0.544 3.456 10 O -0.561 6.561 11 C -0.043 4.043 12 C -0.107 4.107 13 C 0.174 3.826 14 N -0.457 5.457 15 C 0.197 3.803 16 C -0.032 4.032 17 N -0.276 5.276 18 N -0.031 5.031 19 N -0.298 5.298 20 C 0.078 3.922 21 N -0.733 5.733 22 C -0.223 4.223 23 H 0.071 0.929 24 C -0.078 4.078 25 N -0.969 5.969 26 Si 0.956 3.044 27 H -0.270 1.270 28 H -0.298 1.298 29 H -0.293 1.293 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.416 0.584 39 H 0.204 0.796 40 H 0.243 0.757 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.369 0.631 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 19.415 -20.749 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.065 0.935 4 C -0.155 4.155 5 C 0.042 3.958 6 H 0.061 0.939 7 C -0.210 4.210 8 N -0.341 5.341 9 C 0.330 3.670 10 O -0.439 6.439 11 C -0.059 4.059 12 C -0.131 4.131 13 C 0.001 3.999 14 N -0.171 5.171 15 C -0.045 4.045 16 C -0.163 4.163 17 N -0.148 5.148 18 N -0.012 5.012 19 N -0.101 5.101 20 C -0.060 4.060 21 N -0.373 5.373 22 C -0.356 4.356 23 H 0.089 0.911 24 C -0.270 4.270 25 N -0.620 5.620 26 Si 0.787 3.213 27 H -0.196 1.196 28 H -0.224 1.224 29 H -0.220 1.220 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.255 0.745 39 H 0.221 0.779 40 H 0.259 0.741 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.201 0.799 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.341 19.119 -19.631 27.606 hybrid contribution -0.344 -0.508 1.312 1.448 sum 2.998 18.610 -18.319 26.286 Atomic orbital electron populations 1.22305 0.97505 1.00825 1.00905 1.20583 0.92768 0.95428 0.85844 0.93470 1.22097 0.92026 1.02479 0.98859 1.20891 0.96082 0.80465 0.98366 0.93865 1.22088 1.00121 1.00351 0.98395 1.45628 1.15189 1.11881 1.61406 1.18348 0.82889 0.87260 0.78545 1.90866 1.52581 1.56891 1.43514 1.19829 0.91644 0.94757 0.99679 1.23002 1.00938 0.93421 0.95701 1.23919 0.89794 0.94661 0.91546 1.66465 1.03191 1.36452 1.11002 1.19953 0.89991 0.91101 1.03429 1.20616 0.96709 0.93884 1.05046 1.75493 0.99711 1.22616 1.17005 1.78142 1.21212 0.88125 1.13699 1.47497 1.10343 1.10995 1.41236 1.22781 0.96857 0.79128 1.07189 1.42630 1.78203 1.10105 1.06367 1.19475 1.33791 0.93789 0.88507 0.91089 1.25393 1.03750 0.96791 1.01111 1.69779 1.53159 1.10072 1.29028 0.85453 0.77894 0.77241 0.80707 1.19614 1.22449 1.22006 0.95321 0.89901 0.94166 0.86535 0.90563 0.94975 0.91166 0.89192 0.74527 0.77869 0.74116 0.86873 0.86131 0.86345 0.79941 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.73 9.49 71.98 0.68 -4.05 16 2 C 0.16 5.59 2.84 44.99 0.13 5.72 16 3 H 0.05 1.62 7.56 -2.39 -0.02 1.60 16 4 C -0.12 -3.04 4.29 30.60 0.13 -2.91 16 5 C 0.15 4.58 2.52 44.99 0.11 4.70 16 6 H 0.04 1.96 7.05 -2.39 -0.02 1.95 16 7 C -0.15 -3.94 9.48 71.98 0.68 -3.26 16 8 N -0.69 -18.59 4.41 -445.38 -1.96 -20.55 16 9 C 0.54 19.60 7.76 86.80 0.67 20.27 16 10 O -0.56 -27.64 15.93 -3.85 -0.06 -27.70 16 11 C -0.04 -1.25 5.92 -19.79 -0.12 -1.37 16 12 C -0.11 -1.56 9.61 22.65 0.22 -1.34 16 13 C 0.17 1.95 11.14 84.82 0.94 2.90 16 14 N -0.46 -8.74 10.35 -193.10 -2.00 -10.74 16 15 C 0.20 5.30 8.08 134.17 1.08 6.39 16 16 C -0.03 -1.09 6.97 40.06 0.28 -0.81 16 17 N -0.28 -11.36 11.92 -51.93 -0.62 -11.98 16 18 N -0.03 -1.04 13.07 37.02 0.48 -0.55 16 19 N -0.30 -7.55 3.79 -366.60 -1.39 -8.95 16 20 C 0.08 0.92 11.41 127.77 1.46 2.38 16 21 N -0.73 -36.34 4.49 -322.95 -1.45 -37.79 16 22 C -0.22 -12.67 9.93 84.03 0.83 -11.84 16 23 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 24 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 25 N -0.97 -62.75 13.06 21.65 0.28 -62.46 16 26 Si 0.96 49.51 29.55 68.60 2.03 51.53 16 27 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 28 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 29 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 30 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.42 6.74 6.75 -92.71 -0.63 6.12 16 39 H 0.20 0.85 6.53 -2.91 -0.02 0.83 16 40 H 0.24 -0.26 8.06 -2.91 -0.02 -0.28 16 41 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.37 20.19 7.80 -92.71 -0.72 19.47 16 45 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -97.64 382.30 2.58 -95.07 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.31 Total: 21.63 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 7.58 Total: 12.49 kcal Atomic # 7 Polarization: -146.36 SS G_CDS: -6.66 Total: -153.02 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.06 Total: -27.70 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.03 Total: 51.53 kcal Total: -97.64 2.58 -95.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135287780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.083 kcal (2) G-P(sol) polarization free energy of solvation -97.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds