Wall clock time and date at job start Tue Mar 31 2020 17:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32448 * 125.18150 * 2 1 4 4 C 1.32875 * 109.81011 * 179.97438 * 3 2 1 5 5 N 1.33734 * 132.44247 * 179.97438 * 4 3 2 6 6 C 1.31208 * 121.19629 * 180.02562 * 5 4 3 7 7 C 1.40103 * 120.45091 * 359.97438 * 6 5 4 8 8 C 1.36989 * 119.05508 * 0.02562 * 7 6 5 9 9 C 1.47719 * 120.63664 * 179.97438 * 8 7 6 10 10 O 1.21560 * 120.00023 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00183 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99809 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47647 * 35.00090 * 12 11 9 14 14 C 1.53003 * 109.47259 * 274.99653 * 12 11 9 15 15 C 1.53006 * 109.47023 * 154.99886 * 12 11 9 16 16 C 1.53004 * 109.46899 * 294.99875 * 15 12 11 17 17 H 1.09002 * 109.47083 * 304.99688 * 16 15 12 18 18 C 1.52998 * 109.47078 * 185.00181 * 16 15 12 19 19 N 1.46504 * 109.47001 * 64.99994 * 16 15 12 20 20 C 1.36937 * 119.99426 * 204.99760 * 19 16 15 21 21 H 1.07999 * 120.00769 * 0.02562 * 20 19 16 22 22 C 1.38818 * 119.99547 * 179.97438 * 20 19 16 23 23 N 1.31615 * 119.99891 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99955 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47201 * 89.99944 * 24 22 20 26 26 H 1.48499 * 109.47102 * 210.00468 * 24 22 20 27 27 H 1.48511 * 109.46938 * 330.00139 * 24 22 20 28 28 N 1.36685 * 107.18021 * 0.02562 * 4 3 2 29 29 N 1.31352 * 125.18500 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46732 * 269.99946 * 1 2 3 31 31 H 1.08999 * 109.47350 * 30.00070 * 1 2 3 32 32 H 1.08998 * 109.46793 * 150.00417 * 1 2 3 33 33 H 1.08000 * 119.77362 * 179.97438 * 6 5 4 34 34 H 1.08011 * 120.47108 * 180.02562 * 7 6 5 35 35 H 0.96995 * 119.99495 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.46764 * 60.00223 * 14 12 11 37 37 H 1.08996 * 109.46900 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.46611 * 300.00201 * 14 12 11 39 39 H 1.08995 * 109.47352 * 54.99506 * 15 12 11 40 40 H 1.08998 * 109.47164 * 175.00083 * 15 12 11 41 41 H 1.09002 * 109.46761 * 299.99704 * 18 16 15 42 42 H 1.08997 * 109.47671 * 59.99670 * 18 16 15 43 43 H 1.08996 * 109.47348 * 180.02562 * 18 16 15 44 44 H 0.96992 * 120.00098 * 24.99590 * 19 16 15 45 45 H 0.97000 * 119.99704 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2701 1.0825 0.0000 4 6 3.5513 0.7303 0.0006 5 7 4.6832 1.4427 0.0003 6 6 5.8562 0.8548 0.0005 7 6 5.9498 -0.5431 0.0015 8 6 4.7995 -1.2869 0.0017 9 6 4.8576 -2.7630 0.0022 10 8 5.9334 -3.3289 0.0028 11 7 3.7177 -3.4822 0.0019 12 6 3.7754 -4.9461 0.0029 13 1 4.6304 -5.2757 0.5931 14 6 3.9220 -5.4517 -1.4337 15 6 2.4887 -5.5067 0.6120 16 6 2.4044 -5.1039 2.0857 17 1 3.3074 -5.4280 2.6031 18 6 1.1836 -5.7670 2.7266 19 7 2.2791 -3.6478 2.1875 20 6 2.6894 -3.0032 3.3239 21 1 3.1057 -3.5680 4.1448 22 6 2.5711 -1.6234 3.4202 23 7 2.0642 -0.9349 2.4195 24 14 3.1315 -0.7439 4.9700 25 1 4.5603 -0.3629 4.8339 26 1 2.3105 0.4772 5.1705 27 1 2.9690 -1.6469 6.1378 28 7 3.5945 -0.6358 0.0003 29 7 2.2639 -1.0735 0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 6.7556 1.4526 -0.0001 34 1 6.9153 -1.0273 0.0021 35 1 2.8594 -3.0306 0.0017 36 1 4.8387 -5.0523 -1.8676 37 1 3.9644 -6.5409 -1.4329 38 1 3.0669 -5.1221 -2.0239 39 1 1.6283 -5.1060 0.0762 40 1 2.4924 -6.5937 0.5322 41 1 0.2806 -5.4429 2.2092 42 1 1.2768 -6.8503 2.6508 43 1 1.1233 -5.4797 3.7763 44 1 1.9055 -3.1404 1.4501 45 1 1.9820 0.0292 2.4867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135920523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:55 Heat of formation + Delta-G solvation = 132.401570 kcal Electronic energy + Delta-G solvation = -31174.335371 eV Core-core repulsion = 27230.945891 eV Total energy + Delta-G solvation = -3943.389479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.20748 -39.58731 -38.16883 -36.87936 -34.35328 -34.08193 -32.29300 -31.61557 -30.64778 -30.01880 -28.60899 -28.20384 -26.43352 -25.04546 -23.71774 -23.51144 -21.63342 -20.49233 -20.33254 -19.72433 -18.07871 -17.63571 -17.28159 -16.57804 -16.04001 -15.89489 -15.04477 -14.92995 -14.46663 -14.02214 -13.96855 -13.61545 -13.22338 -13.18166 -12.94610 -12.92216 -12.68677 -12.25154 -12.16232 -12.00163 -11.85548 -11.83883 -11.75239 -11.73567 -11.13727 -10.99893 -10.90690 -10.79667 -10.47632 -10.31672 -10.15435 -9.96547 -9.74621 -9.50747 -9.35419 -9.05093 -8.75389 -8.59412 -8.10734 -6.99773 -5.78301 -3.10644 0.50884 1.31501 2.45935 2.94931 3.33274 3.35620 3.42660 3.45511 3.60712 3.80719 4.05904 4.46426 4.52438 4.75725 5.00511 5.08778 5.23766 5.30317 5.40896 5.47294 5.50363 5.59146 5.66951 5.80332 5.87097 5.93006 5.96441 6.05214 6.07566 6.16591 6.20328 6.25641 6.33110 6.38037 6.45333 6.54572 6.73578 6.77851 6.88300 6.92556 7.01432 7.09995 7.62388 7.85484 8.02263 8.31576 8.53941 8.67725 9.45191 10.00292 10.36559 11.32612 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009346 B = 0.007241 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.260229 B = 3865.823171 C = 4843.084293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.296 3.704 3 N -0.523 5.523 4 C 0.426 3.574 5 N -0.449 5.449 6 C 0.186 3.814 7 C -0.184 4.184 8 C 0.171 3.829 9 C 0.567 3.433 10 O -0.541 6.541 11 N -0.674 5.674 12 C 0.145 3.855 13 H 0.086 0.914 14 C -0.163 4.163 15 C -0.134 4.134 16 C 0.166 3.834 17 H 0.047 0.953 18 C -0.162 4.162 19 N -0.718 5.718 20 C -0.223 4.223 21 H 0.065 0.935 22 C -0.010 4.010 23 N -0.914 5.914 24 Si 0.894 3.106 25 H -0.295 1.295 26 H -0.292 1.292 27 H -0.284 1.284 28 N -0.288 5.288 29 N -0.255 5.255 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.186 0.814 34 H 0.173 0.827 35 H 0.421 0.579 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.052 0.948 44 H 0.385 0.615 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -3.932 -8.998 10.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.016 3.984 3 N -0.256 5.256 4 C 0.066 3.934 5 N -0.163 5.163 6 C -0.002 4.002 7 C -0.211 4.211 8 C 0.048 3.952 9 C 0.350 3.650 10 O -0.419 6.419 11 N -0.330 5.330 12 C 0.041 3.959 13 H 0.104 0.896 14 C -0.221 4.221 15 C -0.173 4.173 16 C 0.056 3.944 17 H 0.065 0.935 18 C -0.222 4.222 19 N -0.362 5.362 20 C -0.354 4.354 21 H 0.083 0.917 22 C -0.206 4.206 23 N -0.564 5.564 24 Si 0.726 3.274 25 H -0.223 1.223 26 H -0.219 1.219 27 H -0.210 1.210 28 N -0.070 5.070 29 N -0.086 5.086 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.203 0.797 34 H 0.191 0.809 35 H 0.267 0.733 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.222 0.778 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.796 -3.782 -8.826 9.768 hybrid contribution 0.226 0.187 1.289 1.321 sum 2.021 -3.595 -7.537 8.592 Atomic orbital electron populations 1.20028 0.84147 1.02436 1.04324 1.23645 0.97489 0.84404 0.92870 1.70473 0.96562 1.29117 1.29412 1.22347 0.93250 0.78607 0.99222 1.67598 0.95960 1.37085 1.15700 1.23304 0.95053 0.91816 0.89997 1.21973 0.98465 0.94844 1.05783 1.20695 0.83131 0.94110 0.97233 1.17465 0.85196 0.84647 0.77706 1.90757 1.28768 1.70529 1.51862 1.46345 1.09803 1.06877 1.70015 1.20952 0.99488 0.79546 0.95949 0.89561 1.22207 1.02061 1.01063 0.96769 1.22222 0.96506 1.00530 0.97995 1.20313 0.95864 0.86338 0.91839 0.93469 1.22402 1.00093 0.98007 1.01724 1.42606 1.74950 1.00033 1.18631 1.19177 1.32518 0.89773 0.93948 0.91675 1.24603 1.02239 0.96254 0.97462 1.69850 1.51007 1.05794 1.29759 0.86377 0.77946 0.79487 0.83549 1.22267 1.21883 1.20991 1.48540 1.05936 1.08567 1.43980 1.77671 0.82348 1.20719 1.27862 0.88918 0.90642 0.90596 0.79732 0.80914 0.73315 0.92300 0.91673 0.92659 0.91661 0.90442 0.93589 0.94536 0.92865 0.77818 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.80 10.51 36.01 0.38 -0.42 16 2 C 0.30 6.00 5.78 -157.01 -0.91 5.09 16 3 N -0.52 -11.38 11.21 -11.80 -0.13 -11.52 16 4 C 0.43 9.10 9.00 -323.16 -2.91 6.19 16 5 N -0.45 -8.42 10.45 -13.84 -0.14 -8.57 16 6 C 0.19 2.68 11.26 -17.12 -0.19 2.49 16 7 C -0.18 -2.87 9.63 -39.34 -0.38 -3.25 16 8 C 0.17 3.32 6.81 -82.15 -0.56 2.76 16 9 C 0.57 11.22 7.76 -12.39 -0.10 11.12 16 10 O -0.54 -11.06 16.03 5.31 0.09 -10.97 16 11 N -0.67 -12.56 3.80 -54.79 -0.21 -12.77 16 12 C 0.15 2.32 2.57 -67.93 -0.17 2.14 16 13 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 14 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 15 C -0.13 -2.00 4.43 -26.73 -0.12 -2.12 16 16 C 0.17 3.06 2.89 -67.93 -0.20 2.87 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 C -0.16 -2.74 9.49 37.16 0.35 -2.38 16 19 N -0.72 -16.10 3.84 -53.42 -0.21 -16.30 16 20 C -0.22 -5.74 9.93 -15.06 -0.15 -5.89 16 21 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.91 -23.80 8.51 55.49 0.47 -23.33 16 24 Si 0.89 22.44 29.55 -169.99 -5.02 17.42 16 25 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 28 N -0.29 -6.00 3.54 -10.51 -0.04 -6.04 16 29 N -0.26 -5.34 7.32 32.39 0.24 -5.10 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.17 2.22 7.66 -52.48 -0.40 1.82 16 35 H 0.42 8.29 3.70 -40.82 -0.15 8.14 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.39 8.88 5.05 -40.82 -0.21 8.67 16 45 H 0.25 6.88 7.58 -40.82 -0.31 6.57 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -31.19 365.71 -10.30 -41.49 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.16 Total: 13.72 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: -4.69 Total: 16.48 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -0.02 Total: -83.64 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.19 -10.30 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135920523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.887 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds