Wall clock time and date at job start Tue Mar 31 2020 17:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40173 * 119.27057 * 179.67481 * 3 2 1 5 5 N 1.31255 * 120.35709 * 0.63972 * 4 3 2 6 6 C 1.33986 * 120.88015 * 359.66841 * 5 4 3 7 7 N 1.32499 * 132.34596 * 180.02562 * 6 5 4 8 8 C 1.33472 * 109.75615 * 179.97438 * 7 6 5 9 9 C 1.48131 * 125.32259 * 179.97438 * 8 7 6 10 10 O 1.21519 * 119.99807 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00103 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00043 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46904 * 325.00728 * 12 11 9 14 14 C 1.52995 * 109.46619 * 85.00344 * 12 11 9 15 15 C 1.52994 * 109.47295 * 205.00288 * 12 11 9 16 16 C 1.53007 * 109.47282 * 65.00227 * 15 12 11 17 17 H 1.08998 * 109.46529 * 304.99907 * 16 15 12 18 18 C 1.52995 * 109.47095 * 185.00178 * 16 15 12 19 19 N 1.46496 * 109.47181 * 64.99765 * 16 15 12 20 20 C 1.36936 * 120.00419 * 205.00368 * 19 16 15 21 21 H 1.08004 * 119.99688 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00222 * 180.02562 * 20 19 16 23 23 N 1.31613 * 120.00027 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99992 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47212 * 89.99317 * 24 22 20 26 26 H 1.48493 * 109.47189 * 209.99764 * 24 22 20 27 27 H 1.48503 * 109.47170 * 329.99709 * 24 22 20 28 28 N 1.31989 * 109.35071 * 359.97438 * 8 7 6 29 29 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 30 30 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 33 33 H 1.07998 * 120.36884 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.82303 * 180.30601 * 4 3 2 35 35 H 0.97006 * 119.99693 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.46976 * 180.02562 * 14 12 11 37 37 H 1.09005 * 109.47416 * 300.00038 * 14 12 11 38 38 H 1.09002 * 109.47313 * 60.00035 * 14 12 11 39 39 H 1.08999 * 109.47212 * 185.00320 * 15 12 11 40 40 H 1.09006 * 109.47091 * 305.00398 * 15 12 11 41 41 H 1.09000 * 109.47149 * 299.99860 * 18 16 15 42 42 H 1.09000 * 109.47232 * 59.99962 * 18 16 15 43 43 H 1.09000 * 109.47141 * 179.97438 * 18 16 15 44 44 H 0.97001 * 119.99872 * 25.00026 * 19 16 15 45 45 H 0.97001 * 120.00570 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1395 0.0069 5 7 4.2360 -0.0068 0.0007 6 6 3.5665 -1.1675 -0.0057 7 7 3.9689 -2.4299 -0.0121 8 6 2.9091 -3.2412 -0.0163 9 6 2.9637 -4.7215 -0.0244 10 8 1.9344 -5.3674 -0.0272 11 7 4.1550 -5.3519 -0.0286 12 6 4.2090 -6.8159 -0.0361 13 1 3.3815 -7.2129 0.5520 14 6 4.1009 -7.3227 -1.4756 15 6 5.5347 -7.2804 0.5701 16 6 5.5884 -6.8810 2.0461 17 1 5.4207 -5.8079 2.1383 18 6 6.9620 -7.2336 2.6202 19 7 4.5501 -7.6029 2.7855 20 6 4.0513 -7.0826 3.9498 21 1 4.4231 -6.1397 4.3228 22 6 3.0678 -7.7670 4.6507 23 7 2.6143 -8.9158 4.1959 24 14 2.3879 -7.0575 6.2393 25 1 1.2200 -6.1923 5.9351 26 1 1.9645 -8.1641 7.1343 27 1 3.4390 -6.2519 6.9114 28 7 1.8048 -2.5182 -0.0121 29 7 2.1978 -1.1735 -0.0058 30 1 -0.3633 -0.0050 1.0277 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5095 33 1 1.6693 2.1124 -0.0004 34 1 4.1535 2.0649 0.0120 35 1 4.9766 -4.8362 -0.0260 36 1 4.1406 -8.4120 -1.4811 37 1 3.1564 -6.9918 -1.9074 38 1 4.9283 -6.9256 -2.0637 39 1 5.6136 -8.3641 0.4839 40 1 6.3620 -6.8122 0.0366 41 1 7.1298 -8.3067 2.5278 42 1 7.7346 -6.6964 2.0700 43 1 7.0005 -6.9487 3.6716 44 1 4.2158 -8.4496 2.4503 45 1 1.9273 -9.3943 4.6858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136078398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:04 Heat of formation + Delta-G solvation = 109.235277 kcal Electronic energy + Delta-G solvation = -28447.190540 eV Core-core repulsion = 24502.796495 eV Total energy + Delta-G solvation = -3944.394045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -43.19769 -39.85631 -38.77763 -36.77409 -35.61257 -34.46668 -32.43637 -31.93460 -31.21208 -30.56473 -28.95057 -28.52660 -26.29643 -25.52814 -24.51171 -23.54335 -22.44379 -21.09359 -20.28674 -19.65392 -18.94651 -18.33072 -17.38257 -17.04594 -16.96171 -16.00110 -15.81426 -14.91407 -14.66226 -14.57488 -14.05552 -13.93268 -13.86454 -13.77977 -13.57674 -13.11582 -12.95091 -12.89781 -12.87167 -12.65247 -12.11064 -11.97007 -11.80493 -11.66761 -11.53818 -11.00893 -10.77470 -10.57908 -10.54682 -10.40082 -10.37281 -10.16211 -10.03281 -10.02642 -9.83019 -9.54536 -9.08172 -8.81261 -8.76055 -6.84677 -5.66316 -2.93680 -0.01853 0.31132 1.42586 1.69472 2.77080 2.92275 3.09998 3.46175 3.50061 3.54972 3.55974 3.67427 3.85677 4.26611 4.45607 4.68345 4.70535 4.78727 4.83411 4.89939 5.16109 5.27246 5.43474 5.52066 5.56154 5.67563 5.69519 5.74561 5.76864 5.87447 5.94290 5.98927 6.09667 6.20515 6.36460 6.39376 6.50053 6.63405 6.69557 6.83044 6.98583 7.04256 7.16043 7.41002 7.77177 7.80105 8.33780 8.52525 9.63796 10.21306 10.55898 11.56571 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010615 B = 0.003511 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.047072 B = 7973.094201 C = 9047.722391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.207 3.793 3 C -0.232 4.232 4 C 0.211 3.789 5 N -0.454 5.454 6 C 0.444 3.556 7 N -0.498 5.498 8 C 0.249 3.751 9 C 0.609 3.391 10 O -0.498 6.498 11 N -0.687 5.687 12 C 0.144 3.856 13 H 0.110 0.890 14 C -0.162 4.162 15 C -0.131 4.131 16 C 0.169 3.831 17 H 0.047 0.953 18 C -0.164 4.164 19 N -0.721 5.721 20 C -0.233 4.233 21 H 0.066 0.934 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.901 3.099 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 N -0.267 5.267 29 N -0.329 5.329 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.175 0.825 34 H 0.192 0.808 35 H 0.407 0.593 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.051 0.949 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 21.828 -13.897 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.089 3.911 3 C -0.257 4.257 4 C 0.025 3.975 5 N -0.169 5.169 6 C 0.083 3.917 7 N -0.232 5.232 8 C -0.035 4.035 9 C 0.388 3.612 10 O -0.369 6.369 11 N -0.339 5.339 12 C 0.040 3.960 13 H 0.128 0.872 14 C -0.220 4.220 15 C -0.169 4.169 16 C 0.059 3.941 17 H 0.065 0.935 18 C -0.224 4.224 19 N -0.362 5.362 20 C -0.364 4.364 21 H 0.084 0.916 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.732 3.268 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.209 1.209 28 N -0.100 5.100 29 N -0.111 5.111 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.192 0.808 34 H 0.209 0.791 35 H 0.243 0.757 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.944 20.504 -13.749 24.705 hybrid contribution -0.872 0.811 0.987 1.546 sum 0.073 21.315 -12.761 24.843 Atomic orbital electron populations 1.21114 0.86173 1.05674 1.05271 1.20969 0.96848 0.81914 0.91371 1.21814 0.95756 0.97875 1.10215 1.23621 0.91763 0.95784 0.86382 1.68071 1.36182 0.94999 1.17665 1.22730 0.78394 0.93678 0.96857 1.70840 1.28289 0.96304 1.27775 1.24442 0.85706 0.97101 0.96204 1.16250 0.85070 0.81584 0.78310 1.90880 1.33486 1.64451 1.48099 1.45719 1.07293 1.08146 1.72716 1.21199 1.01057 0.77383 0.96341 0.87237 1.22198 1.01790 1.01569 0.96480 1.22178 0.95244 1.01992 0.97505 1.20252 0.88982 0.96106 0.88744 0.93497 1.22435 0.98222 1.00564 1.01218 1.42397 1.43304 1.24761 1.25770 1.19168 1.15421 1.03123 0.98679 0.91566 1.24667 0.99729 0.97219 0.99148 1.69639 1.32451 1.15663 1.40268 0.86278 0.78992 0.77812 0.83685 1.21903 1.21789 1.20927 1.78931 1.19390 0.82773 1.28928 1.49069 1.09191 1.06432 1.46360 0.88274 0.88931 0.88298 0.80786 0.79082 0.75705 0.91307 0.92436 0.92824 0.90233 0.91693 0.93522 0.94597 0.92940 0.78325 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.72 10.13 36.01 0.36 -0.36 16 2 C 0.21 1.78 6.86 -81.58 -0.56 1.23 16 3 C -0.23 -1.14 9.72 -39.77 -0.39 -1.52 16 4 C 0.21 1.30 11.27 -17.07 -0.19 1.10 16 5 N -0.45 -5.34 10.48 -13.79 -0.14 -5.48 16 6 C 0.44 6.63 8.99 -323.04 -2.90 3.73 16 7 N -0.50 -8.51 10.89 -12.23 -0.13 -8.64 16 8 C 0.25 4.56 7.92 -156.78 -1.24 3.32 16 9 C 0.61 11.87 7.81 -12.20 -0.10 11.77 16 10 O -0.50 -11.36 16.73 5.35 0.09 -11.27 16 11 N -0.69 -11.64 4.45 -54.66 -0.24 -11.88 16 12 C 0.14 2.45 2.52 -67.94 -0.17 2.28 16 13 H 0.11 2.37 7.05 -51.93 -0.37 2.00 16 14 C -0.16 -2.30 9.48 37.15 0.35 -1.95 16 15 C -0.13 -2.08 4.29 -26.73 -0.11 -2.19 16 16 C 0.17 3.37 2.84 -67.93 -0.19 3.18 16 17 H 0.05 0.99 7.56 -51.93 -0.39 0.60 16 18 C -0.16 -3.01 9.49 37.16 0.35 -2.66 16 19 N -0.72 -18.22 4.49 -53.43 -0.24 -18.46 16 20 C -0.23 -6.68 9.93 -15.06 -0.15 -6.83 16 21 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -29.02 13.06 55.49 0.72 -28.29 16 24 Si 0.90 23.59 29.55 -169.99 -5.02 18.56 16 25 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 27 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 28 N -0.27 -4.66 12.67 32.02 0.41 -4.26 16 29 N -0.33 -4.56 3.91 -10.07 -0.04 -4.59 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.21 8.09 -51.93 -0.42 -0.21 16 33 H 0.17 0.05 8.06 -52.49 -0.42 -0.37 16 34 H 0.19 0.25 8.06 -52.49 -0.42 -0.18 16 35 H 0.41 6.16 8.27 -40.82 -0.34 5.82 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.38 10.26 7.80 -40.82 -0.32 9.95 16 45 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 386.73 15.07 5.83 5.83 Total: -1.00 -38.49 386.73 -10.26 -48.76 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.45 Total: 9.09 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -5.03 Total: 10.65 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: 0.33 Total: -81.61 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.02 Total: 18.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.49 -10.26 -48.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.992 kcal (2) G-P(sol) polarization free energy of solvation -38.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds