Wall clock time and date at job start Tue Mar 31 2020 17:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40173 * 119.27057 * 179.67481 * 3 2 1 5 5 N 1.31255 * 120.35709 * 0.63972 * 4 3 2 6 6 C 1.33986 * 120.88015 * 359.66841 * 5 4 3 7 7 N 1.32499 * 132.34596 * 180.02562 * 6 5 4 8 8 C 1.33472 * 109.75615 * 179.97438 * 7 6 5 9 9 C 1.48131 * 125.32259 * 179.97438 * 8 7 6 10 10 O 1.21519 * 119.99807 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00103 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00043 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46904 * 325.00728 * 12 11 9 14 14 C 1.52995 * 109.46619 * 85.00344 * 12 11 9 15 15 C 1.52994 * 109.47295 * 205.00288 * 12 11 9 16 16 C 1.53007 * 109.47282 * 65.00227 * 15 12 11 17 17 H 1.08998 * 109.46529 * 304.99907 * 16 15 12 18 18 C 1.52995 * 109.47095 * 185.00178 * 16 15 12 19 19 N 1.46496 * 109.47181 * 64.99765 * 16 15 12 20 20 C 1.36936 * 120.00419 * 205.00368 * 19 16 15 21 21 H 1.08004 * 119.99688 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00222 * 180.02562 * 20 19 16 23 23 N 1.31613 * 120.00027 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99992 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47212 * 89.99317 * 24 22 20 26 26 H 1.48493 * 109.47189 * 209.99764 * 24 22 20 27 27 H 1.48503 * 109.47170 * 329.99709 * 24 22 20 28 28 N 1.31989 * 109.35071 * 359.97438 * 8 7 6 29 29 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 30 30 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 33 33 H 1.07998 * 120.36884 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.82303 * 180.30601 * 4 3 2 35 35 H 0.97006 * 119.99693 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.46976 * 180.02562 * 14 12 11 37 37 H 1.09005 * 109.47416 * 300.00038 * 14 12 11 38 38 H 1.09002 * 109.47313 * 60.00035 * 14 12 11 39 39 H 1.08999 * 109.47212 * 185.00320 * 15 12 11 40 40 H 1.09006 * 109.47091 * 305.00398 * 15 12 11 41 41 H 1.09000 * 109.47149 * 299.99860 * 18 16 15 42 42 H 1.09000 * 109.47232 * 59.99962 * 18 16 15 43 43 H 1.09000 * 109.47141 * 179.97438 * 18 16 15 44 44 H 0.97001 * 119.99872 * 25.00026 * 19 16 15 45 45 H 0.97001 * 120.00570 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5967 1.1395 0.0069 5 7 4.2360 -0.0068 0.0007 6 6 3.5665 -1.1675 -0.0057 7 7 3.9689 -2.4299 -0.0121 8 6 2.9091 -3.2412 -0.0163 9 6 2.9637 -4.7215 -0.0244 10 8 1.9344 -5.3674 -0.0272 11 7 4.1550 -5.3519 -0.0286 12 6 4.2090 -6.8159 -0.0361 13 1 3.3815 -7.2129 0.5520 14 6 4.1009 -7.3227 -1.4756 15 6 5.5347 -7.2804 0.5701 16 6 5.5884 -6.8810 2.0461 17 1 5.4207 -5.8079 2.1383 18 6 6.9620 -7.2336 2.6202 19 7 4.5501 -7.6029 2.7855 20 6 4.0513 -7.0826 3.9498 21 1 4.4231 -6.1397 4.3228 22 6 3.0678 -7.7670 4.6507 23 7 2.6143 -8.9158 4.1959 24 14 2.3879 -7.0575 6.2393 25 1 1.2200 -6.1923 5.9351 26 1 1.9645 -8.1641 7.1343 27 1 3.4390 -6.2519 6.9114 28 7 1.8048 -2.5182 -0.0121 29 7 2.1978 -1.1735 -0.0058 30 1 -0.3633 -0.0050 1.0277 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5095 33 1 1.6693 2.1124 -0.0004 34 1 4.1535 2.0649 0.0120 35 1 4.9766 -4.8362 -0.0260 36 1 4.1406 -8.4120 -1.4811 37 1 3.1564 -6.9918 -1.9074 38 1 4.9283 -6.9256 -2.0637 39 1 5.6136 -8.3641 0.4839 40 1 6.3620 -6.8122 0.0366 41 1 7.1298 -8.3067 2.5278 42 1 7.7346 -6.6964 2.0700 43 1 7.0005 -6.9487 3.6716 44 1 4.2158 -8.4496 2.4503 45 1 1.9273 -9.3943 4.6858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136078398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:03 Heat of formation + Delta-G solvation = 81.946446 kcal Electronic energy + Delta-G solvation = -28448.373873 eV Core-core repulsion = 24502.796495 eV Total energy + Delta-G solvation = -3945.577378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.16994 -41.16358 -39.78550 -38.36764 -36.40054 -36.17298 -34.12407 -33.18921 -32.23689 -31.93108 -30.43817 -29.53464 -27.63913 -26.70580 -25.67394 -25.29161 -23.39738 -22.38547 -21.67043 -21.25297 -19.92178 -19.36842 -19.18001 -18.30741 -18.05064 -17.30379 -16.70685 -16.55862 -16.18969 -15.70448 -15.58908 -15.25748 -15.20269 -14.63213 -14.54708 -14.40033 -14.32156 -13.89505 -13.83079 -13.63282 -13.41552 -13.37074 -13.21416 -12.99859 -12.82991 -12.69423 -12.66017 -12.31174 -12.21323 -11.87444 -11.72103 -11.60028 -11.52410 -11.46120 -11.13390 -10.99877 -10.94783 -10.20304 -9.95471 -8.96706 -7.94367 -5.19453 -0.77268 -0.51991 0.52894 0.56542 1.37742 1.40879 1.47830 1.62278 1.93146 2.13837 2.29970 2.53206 2.84933 3.19119 3.31100 3.39451 3.77358 3.83086 3.99500 4.06481 4.09995 4.26094 4.36579 4.41196 4.47081 4.50434 4.52361 4.65472 4.69724 4.77563 4.82145 4.89710 4.93925 5.00718 5.09489 5.10969 5.17363 5.21414 5.31500 5.34619 5.45383 5.53557 5.62097 6.10469 6.29309 6.30477 6.56967 6.93212 7.35041 8.14781 8.36035 9.29269 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010615 B = 0.003511 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.047072 B = 7973.094201 C = 9047.722391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.165 3.835 3 C -0.186 4.186 4 C 0.224 3.776 5 N -0.486 5.486 6 C 0.428 3.572 7 N -0.525 5.525 8 C 0.228 3.772 9 C 0.605 3.395 10 O -0.548 6.548 11 N -0.672 5.672 12 C 0.144 3.856 13 H 0.057 0.943 14 C -0.152 4.152 15 C -0.117 4.117 16 C 0.161 3.839 17 H 0.033 0.967 18 C -0.154 4.154 19 N -0.730 5.730 20 C -0.229 4.229 21 H 0.064 0.936 22 C -0.075 4.075 23 N -0.966 5.966 24 Si 0.959 3.041 25 H -0.298 1.298 26 H -0.289 1.289 27 H -0.270 1.270 28 N -0.302 5.302 29 N -0.331 5.331 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.145 0.855 33 H 0.237 0.763 34 H 0.250 0.750 35 H 0.417 0.583 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.028 0.972 44 H 0.373 0.627 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 26.095 -14.749 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.210 4.210 4 C 0.042 3.958 5 N -0.204 5.204 6 C 0.068 3.932 7 N -0.261 5.261 8 C -0.056 4.056 9 C 0.385 3.615 10 O -0.423 6.423 11 N -0.324 5.324 12 C 0.041 3.959 13 H 0.075 0.925 14 C -0.210 4.210 15 C -0.155 4.155 16 C 0.053 3.947 17 H 0.051 0.949 18 C -0.214 4.214 19 N -0.371 5.371 20 C -0.361 4.361 21 H 0.082 0.918 22 C -0.267 4.267 23 N -0.617 5.617 24 Si 0.789 3.211 25 H -0.226 1.226 26 H -0.215 1.215 27 H -0.195 1.195 28 N -0.137 5.137 29 N -0.113 5.113 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.163 0.837 33 H 0.254 0.746 34 H 0.266 0.734 35 H 0.255 0.745 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.205 0.795 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.548 24.871 -14.613 28.959 hybrid contribution -1.313 -0.122 1.191 1.777 sum 1.235 24.749 -13.422 28.181 Atomic orbital electron populations 1.21220 0.84444 1.06485 1.05639 1.21977 0.98585 0.81255 0.93190 1.22639 0.95309 0.98502 1.04550 1.24806 0.93014 0.95743 0.82247 1.68237 1.36824 0.95248 1.20061 1.22981 0.79028 0.94102 0.97106 1.70655 1.28457 0.97590 1.29377 1.23994 0.86671 0.96456 0.98468 1.16544 0.84972 0.82445 0.77530 1.90828 1.35013 1.65806 1.50641 1.45670 1.07071 1.08230 1.71448 1.21126 0.99888 0.77277 0.97659 0.92502 1.22106 1.02079 1.02395 0.94397 1.22105 0.95816 1.02903 0.94720 1.20520 0.88466 0.94787 0.90902 0.94862 1.22275 0.97837 1.01176 1.00107 1.42562 1.44529 1.24651 1.25335 1.19466 1.14669 1.02569 0.99407 0.91849 1.25393 1.00839 0.97999 1.02465 1.69781 1.33315 1.17012 1.41578 0.85345 0.78196 0.77106 0.80461 1.22647 1.21547 1.19458 1.78716 1.20018 0.84947 1.30042 1.49110 1.09468 1.06261 1.46461 0.88029 0.91862 0.83692 0.74620 0.73404 0.74510 0.89965 0.94200 0.89828 0.89263 0.87429 0.93325 0.90616 0.95319 0.79531 0.94241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 10.13 71.24 0.72 -0.45 16 2 C 0.17 2.49 6.86 41.29 0.28 2.77 16 3 C -0.19 -0.83 9.72 22.15 0.22 -0.61 16 4 C 0.22 1.66 11.27 85.25 0.96 2.62 16 5 N -0.49 -10.44 10.48 -197.54 -2.07 -12.51 16 6 C 0.43 12.86 8.99 261.57 2.35 15.21 16 7 N -0.52 -18.81 10.89 -192.61 -2.10 -20.91 16 8 C 0.23 8.98 7.92 137.40 1.09 10.07 16 9 C 0.60 25.55 7.81 86.87 0.68 26.23 16 10 O -0.55 -27.42 16.73 -3.77 -0.06 -27.48 16 11 N -0.67 -23.89 4.45 -445.15 -1.98 -25.87 16 12 C 0.14 5.06 2.52 44.99 0.11 5.18 16 13 H 0.06 2.65 7.05 -2.38 -0.02 2.63 16 14 C -0.15 -4.28 9.48 71.98 0.68 -3.60 16 15 C -0.12 -3.61 4.29 30.59 0.13 -3.47 16 16 C 0.16 6.43 2.84 44.99 0.13 6.56 16 17 H 0.03 1.42 7.56 -2.39 -0.02 1.40 16 18 C -0.15 -5.43 9.49 71.98 0.68 -4.75 16 19 N -0.73 -38.16 4.49 -322.94 -1.45 -39.61 16 20 C -0.23 -13.56 9.93 84.03 0.83 -12.73 16 21 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 22 C -0.07 -4.59 5.50 84.86 0.47 -4.12 16 23 N -0.97 -62.46 13.06 21.65 0.28 -62.18 16 24 Si 0.96 49.93 29.55 68.60 2.03 51.96 16 25 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 26 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 27 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 28 N -0.30 -11.35 12.67 -52.60 -0.67 -12.01 16 29 N -0.33 -9.30 3.91 -185.76 -0.73 -10.03 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.14 -0.03 8.09 -2.38 -0.02 -0.05 16 33 H 0.24 -1.88 8.06 -2.91 -0.02 -1.90 16 34 H 0.25 -1.16 8.06 -2.91 -0.02 -1.18 16 35 H 0.42 12.92 8.27 -92.70 -0.77 12.15 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.11 2.45 8.14 -2.38 -0.02 2.44 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.37 20.83 7.80 -92.71 -0.72 20.10 16 45 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -94.91 386.73 2.14 -92.78 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.46 Total: 26.95 kcal Atomic # 6 Polarization: 29.57 SS G_CDS: 9.34 Total: 38.91 kcal Atomic # 7 Polarization: -174.41 SS G_CDS: -8.71 Total: -183.11 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.06 Total: -27.48 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.03 Total: 51.96 kcal Total: -94.91 2.14 -92.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.723 kcal (2) G-P(sol) polarization free energy of solvation -94.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds