Wall clock time and date at job start Tue Mar 31 2020 17:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40174 * 119.27384 * 179.78827 * 3 2 1 5 5 N 1.31260 * 120.35067 * 0.48984 * 4 3 2 6 6 C 1.33984 * 120.88722 * 359.76127 * 5 4 3 7 7 N 1.32498 * 132.35007 * 179.97438 * 6 5 4 8 8 C 1.33462 * 109.75638 * 179.97438 * 7 6 5 9 9 C 1.48126 * 125.32336 * 179.97438 * 8 7 6 10 10 O 1.21530 * 120.00140 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00194 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00258 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47610 * 35.00369 * 12 11 9 14 14 C 1.52998 * 109.47221 * 274.99765 * 12 11 9 15 15 C 1.53003 * 109.47471 * 155.00014 * 12 11 9 16 16 C 1.53004 * 109.47160 * 295.00284 * 15 12 11 17 17 H 1.09006 * 109.46850 * 304.99532 * 16 15 12 18 18 C 1.52993 * 109.47134 * 184.99671 * 16 15 12 19 19 N 1.46502 * 109.47250 * 64.99409 * 16 15 12 20 20 C 1.36931 * 119.99784 * 205.00023 * 19 16 15 21 21 H 1.07996 * 120.00341 * 0.02562 * 20 19 16 22 22 C 1.38817 * 120.00021 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99793 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00350 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47135 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46987 * 120.00110 * 24 22 20 27 27 H 1.48498 * 109.47306 * 240.00409 * 24 22 20 28 28 N 1.31987 * 109.35383 * 359.97438 * 8 7 6 29 29 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 30 30 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 33 33 H 1.08005 * 120.36690 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.82909 * 180.25076 * 4 3 2 35 35 H 0.97003 * 119.99916 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.46688 * 59.99886 * 14 12 11 37 37 H 1.08995 * 109.47608 * 179.97438 * 14 12 11 38 38 H 1.09004 * 109.47420 * 300.00347 * 14 12 11 39 39 H 1.09006 * 109.46991 * 54.99373 * 15 12 11 40 40 H 1.08992 * 109.47624 * 174.99997 * 15 12 11 41 41 H 1.09003 * 109.47045 * 179.97438 * 18 16 15 42 42 H 1.08998 * 109.47279 * 300.00013 * 18 16 15 43 43 H 1.09001 * 109.47445 * 59.99921 * 18 16 15 44 44 H 0.96996 * 119.99785 * 25.00202 * 19 16 15 45 45 H 0.96996 * 120.00249 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5968 1.1396 0.0045 5 7 4.2359 -0.0069 -0.0010 6 6 3.5666 -1.1675 -0.0062 7 7 3.9689 -2.4299 -0.0126 8 6 2.9092 -3.2412 -0.0153 9 6 2.9637 -4.7214 -0.0229 10 8 1.9344 -5.3674 -0.0252 11 7 4.1549 -5.3518 -0.0272 12 6 4.2089 -6.8158 -0.0353 13 1 3.3807 -7.2067 -0.6263 14 6 4.1031 -7.3380 1.3989 15 6 5.5337 -7.2740 -0.6484 16 6 5.5852 -6.8589 -2.1201 17 1 4.7088 -7.2483 -2.6383 18 6 6.8521 -7.4240 -2.7653 19 7 5.5992 -5.3970 -2.2150 20 6 5.1396 -4.7801 -3.3478 21 1 4.7664 -5.3711 -4.1711 22 6 5.1533 -3.3949 -3.4380 23 7 5.6086 -2.6746 -2.4348 24 14 4.5257 -2.5532 -4.9829 25 1 4.0712 -3.5791 -5.9557 26 1 3.3887 -1.6637 -4.6349 27 1 5.6177 -1.7478 -5.5863 28 7 1.8049 -2.5182 -0.0101 29 7 2.1978 -1.1735 -0.0058 30 1 -0.3633 -0.0050 1.0277 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5095 33 1 1.6693 2.1125 0.0004 34 1 4.1536 2.0649 0.0087 35 1 4.9765 -4.8362 -0.0257 36 1 3.1592 -7.0115 1.8357 37 1 4.1428 -8.4272 1.3930 38 1 4.9314 -6.9471 1.9900 39 1 6.3618 -6.8114 -0.1113 40 1 5.6128 -8.3585 -0.5738 41 1 6.8886 -7.1287 -3.8139 42 1 7.7285 -7.0347 -2.2471 43 1 6.8417 -8.5117 -2.6948 44 1 5.9340 -4.8662 -1.4755 45 1 5.6185 -1.7067 -2.4979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136078399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:10 Heat of formation + Delta-G solvation = 123.176706 kcal Electronic energy + Delta-G solvation = -29850.913845 eV Core-core repulsion = 25907.124345 eV Total energy + Delta-G solvation = -3943.789500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.54804 -39.46483 -38.31138 -36.68796 -35.04262 -34.12970 -32.27599 -31.59758 -30.57372 -30.40563 -28.48362 -28.40078 -26.30194 -25.04048 -23.92585 -23.49048 -21.98508 -20.75155 -20.17774 -19.54372 -18.34791 -17.75905 -17.01636 -16.70550 -16.41556 -15.75507 -15.45811 -14.75240 -14.46295 -14.12724 -13.85185 -13.74149 -13.59864 -13.37011 -13.33201 -12.92989 -12.64769 -12.51740 -12.39615 -12.31844 -12.07636 -11.88290 -11.66597 -11.60157 -11.24119 -10.94328 -10.82251 -10.64330 -10.33333 -10.15956 -9.84103 -9.79757 -9.76595 -9.63510 -9.50506 -9.43009 -8.85069 -8.41820 -8.38985 -6.77545 -5.56545 -2.85731 0.53853 0.89067 2.00955 2.27847 3.34183 3.44235 3.48867 3.51726 3.52930 3.66158 4.06100 4.11943 4.38454 4.68152 4.77141 4.93381 5.12501 5.14868 5.18422 5.19963 5.33562 5.45263 5.57122 5.63510 5.69541 5.74782 5.93985 5.99798 6.01999 6.07108 6.19144 6.31051 6.33821 6.37231 6.39773 6.44618 6.50660 6.60147 6.69182 6.93244 7.06700 7.16846 7.67693 7.85938 7.98410 8.31790 8.55208 8.73962 9.67134 10.21994 10.57228 11.60508 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011212 B = 0.005274 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.647261 B = 5307.918931 C = 6815.707813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.196 3.804 3 C -0.235 4.235 4 C 0.194 3.806 5 N -0.435 5.435 6 C 0.442 3.558 7 N -0.426 5.426 8 C 0.247 3.753 9 C 0.623 3.377 10 O -0.535 6.535 11 N -0.667 5.667 12 C 0.150 3.850 13 H 0.087 0.913 14 C -0.163 4.163 15 C -0.134 4.134 16 C 0.169 3.831 17 H 0.046 0.954 18 C -0.163 4.163 19 N -0.715 5.715 20 C -0.243 4.243 21 H 0.063 0.937 22 C -0.003 4.003 23 N -0.892 5.892 24 Si 0.885 3.115 25 H -0.283 1.283 26 H -0.302 1.302 27 H -0.293 1.293 28 N -0.286 5.286 29 N -0.331 5.331 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.418 0.582 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.034 0.966 44 H 0.380 0.620 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 4.860 9.469 12.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 C -0.261 4.261 4 C 0.006 3.994 5 N -0.149 5.149 6 C 0.081 3.919 7 N -0.157 5.157 8 C -0.036 4.036 9 C 0.403 3.597 10 O -0.410 6.410 11 N -0.321 5.321 12 C 0.045 3.955 13 H 0.105 0.895 14 C -0.222 4.222 15 C -0.172 4.172 16 C 0.059 3.941 17 H 0.064 0.936 18 C -0.223 4.223 19 N -0.359 5.359 20 C -0.374 4.374 21 H 0.081 0.919 22 C -0.201 4.201 23 N -0.538 5.538 24 Si 0.717 3.283 25 H -0.208 1.208 26 H -0.230 1.230 27 H -0.220 1.220 28 N -0.121 5.121 29 N -0.114 5.114 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.185 0.815 34 H 0.202 0.798 35 H 0.258 0.742 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.215 0.785 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.695 3.503 9.309 11.461 hybrid contribution -0.595 1.564 -1.089 1.997 sum -6.290 5.067 8.219 11.524 Atomic orbital electron populations 1.21020 0.86892 1.05314 1.04515 1.20796 0.96384 0.82395 0.92637 1.21691 0.95878 0.97551 1.10935 1.23492 0.91548 0.95928 0.88442 1.68016 1.36192 0.95050 1.15633 1.22788 0.77788 0.93845 0.97462 1.71097 1.26464 0.95566 1.22523 1.24111 0.85962 0.96859 0.96698 1.16166 0.84534 0.82002 0.77003 1.90755 1.33975 1.65207 1.51092 1.45749 1.08255 1.07012 1.71055 1.20940 0.99311 0.79335 0.95893 0.89523 1.22222 1.02182 1.00884 0.96902 1.22227 0.96076 1.00840 0.98080 1.20274 0.95537 0.86575 0.91750 0.93554 1.22420 1.00175 0.97940 1.01750 1.42446 1.75882 0.99006 1.18602 1.19040 1.34762 0.89368 0.94246 0.91853 1.24650 1.02276 0.96371 0.96848 1.69631 1.50455 1.04688 1.29010 0.86455 0.77819 0.79772 0.84212 1.20811 1.23009 1.22039 1.78746 1.19765 0.83042 1.30514 1.49141 1.09432 1.06082 1.46710 0.88914 0.89256 0.88814 0.81512 0.79769 0.74208 0.92338 0.91775 0.92524 0.91487 0.90550 0.92933 0.93603 0.94733 0.78451 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.13 36.01 0.36 -0.77 16 2 C 0.20 2.62 6.86 -81.58 -0.56 2.06 16 3 C -0.24 -2.34 9.72 -39.77 -0.39 -2.73 16 4 C 0.19 2.30 11.27 -17.07 -0.19 2.10 16 5 N -0.44 -7.84 10.48 -13.79 -0.14 -7.99 16 6 C 0.44 9.24 8.99 -323.04 -2.90 6.34 16 7 N -0.43 -9.86 10.08 -12.24 -0.12 -9.99 16 8 C 0.25 5.67 7.92 -156.79 -1.24 4.43 16 9 C 0.62 13.92 7.81 -12.20 -0.10 13.82 16 10 O -0.54 -12.68 16.73 5.34 0.09 -12.59 16 11 N -0.67 -13.20 3.80 -54.66 -0.21 -13.41 16 12 C 0.15 2.50 2.57 -67.93 -0.17 2.32 16 13 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 14 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 15 C -0.13 -2.07 4.43 -26.73 -0.12 -2.18 16 16 C 0.17 3.25 2.89 -67.93 -0.20 3.05 16 17 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 18 C -0.16 -2.89 9.49 37.15 0.35 -2.53 16 19 N -0.72 -16.96 3.84 -53.42 -0.21 -17.17 16 20 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 21 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 22 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 23 N -0.89 -25.49 12.25 55.49 0.68 -24.81 16 24 Si 0.88 23.22 29.55 -169.99 -5.02 18.19 16 25 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.30 -8.22 7.11 56.52 0.40 -7.82 16 27 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 28 N -0.29 -6.19 12.67 32.02 0.41 -5.79 16 29 N -0.33 -6.23 3.91 -10.07 -0.04 -6.27 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.42 8.69 6.18 -40.82 -0.25 8.44 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.38 9.40 5.70 -40.82 -0.23 9.16 16 45 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -35.56 380.93 -10.21 -45.77 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.34 Total: 11.28 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: -5.04 Total: 17.04 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: 0.37 Total: -85.43 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.56 -10.21 -45.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.942 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds