Wall clock time and date at job start Tue Mar 31 2020 17:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40174 * 119.27384 * 179.78827 * 3 2 1 5 5 N 1.31260 * 120.35067 * 0.48984 * 4 3 2 6 6 C 1.33984 * 120.88722 * 359.76127 * 5 4 3 7 7 N 1.32498 * 132.35007 * 179.97438 * 6 5 4 8 8 C 1.33462 * 109.75638 * 179.97438 * 7 6 5 9 9 C 1.48126 * 125.32336 * 179.97438 * 8 7 6 10 10 O 1.21530 * 120.00140 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00194 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00258 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47610 * 35.00369 * 12 11 9 14 14 C 1.52998 * 109.47221 * 274.99765 * 12 11 9 15 15 C 1.53003 * 109.47471 * 155.00014 * 12 11 9 16 16 C 1.53004 * 109.47160 * 295.00284 * 15 12 11 17 17 H 1.09006 * 109.46850 * 304.99532 * 16 15 12 18 18 C 1.52993 * 109.47134 * 184.99671 * 16 15 12 19 19 N 1.46502 * 109.47250 * 64.99409 * 16 15 12 20 20 C 1.36931 * 119.99784 * 205.00023 * 19 16 15 21 21 H 1.07996 * 120.00341 * 0.02562 * 20 19 16 22 22 C 1.38817 * 120.00021 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99793 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00350 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47135 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46987 * 120.00110 * 24 22 20 27 27 H 1.48498 * 109.47306 * 240.00409 * 24 22 20 28 28 N 1.31987 * 109.35383 * 359.97438 * 8 7 6 29 29 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 30 30 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 33 33 H 1.08005 * 120.36690 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.82909 * 180.25076 * 4 3 2 35 35 H 0.97003 * 119.99916 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.46688 * 59.99886 * 14 12 11 37 37 H 1.08995 * 109.47608 * 179.97438 * 14 12 11 38 38 H 1.09004 * 109.47420 * 300.00347 * 14 12 11 39 39 H 1.09006 * 109.46991 * 54.99373 * 15 12 11 40 40 H 1.08992 * 109.47624 * 174.99997 * 15 12 11 41 41 H 1.09003 * 109.47045 * 179.97438 * 18 16 15 42 42 H 1.08998 * 109.47279 * 300.00013 * 18 16 15 43 43 H 1.09001 * 109.47445 * 59.99921 * 18 16 15 44 44 H 0.96996 * 119.99785 * 25.00202 * 19 16 15 45 45 H 0.96996 * 120.00249 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5968 1.1396 0.0045 5 7 4.2359 -0.0069 -0.0010 6 6 3.5666 -1.1675 -0.0062 7 7 3.9689 -2.4299 -0.0126 8 6 2.9092 -3.2412 -0.0153 9 6 2.9637 -4.7214 -0.0229 10 8 1.9344 -5.3674 -0.0252 11 7 4.1549 -5.3518 -0.0272 12 6 4.2089 -6.8158 -0.0353 13 1 3.3807 -7.2067 -0.6263 14 6 4.1031 -7.3380 1.3989 15 6 5.5337 -7.2740 -0.6484 16 6 5.5852 -6.8589 -2.1201 17 1 4.7088 -7.2483 -2.6383 18 6 6.8521 -7.4240 -2.7653 19 7 5.5992 -5.3970 -2.2150 20 6 5.1396 -4.7801 -3.3478 21 1 4.7664 -5.3711 -4.1711 22 6 5.1533 -3.3949 -3.4380 23 7 5.6086 -2.6746 -2.4348 24 14 4.5257 -2.5532 -4.9829 25 1 4.0712 -3.5791 -5.9557 26 1 3.3887 -1.6637 -4.6349 27 1 5.6177 -1.7478 -5.5863 28 7 1.8049 -2.5182 -0.0101 29 7 2.1978 -1.1735 -0.0058 30 1 -0.3633 -0.0050 1.0277 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5095 33 1 1.6693 2.1125 0.0004 34 1 4.1536 2.0649 0.0087 35 1 4.9765 -4.8362 -0.0257 36 1 3.1592 -7.0115 1.8357 37 1 4.1428 -8.4272 1.3930 38 1 4.9314 -6.9471 1.9900 39 1 6.3618 -6.8114 -0.1113 40 1 5.6128 -8.3585 -0.5738 41 1 6.8886 -7.1287 -3.8139 42 1 7.7285 -7.0347 -2.2471 43 1 6.8417 -8.5117 -2.6948 44 1 5.9340 -4.8662 -1.4755 45 1 5.6185 -1.7067 -2.4979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136078399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:09 Heat of formation + Delta-G solvation = 99.971692 kcal Electronic energy + Delta-G solvation = -29851.920090 eV Core-core repulsion = 25907.124345 eV Total energy + Delta-G solvation = -3944.795744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.88977 -40.98771 -39.59585 -38.29218 -36.19693 -35.83140 -34.06118 -32.98348 -31.96201 -31.87873 -30.17837 -29.42603 -27.60644 -26.45491 -25.50735 -25.10469 -23.24065 -22.14516 -21.71370 -21.10308 -19.65274 -19.09346 -18.98537 -18.09787 -17.78293 -17.24500 -16.65735 -16.45531 -16.01936 -15.61770 -15.45287 -15.13954 -15.08669 -14.53564 -14.32979 -14.25834 -14.17473 -13.72011 -13.63921 -13.58850 -13.33306 -13.30936 -13.23627 -12.98862 -12.80127 -12.63853 -12.44974 -12.28913 -12.15609 -11.74082 -11.59051 -11.44316 -11.35790 -11.19653 -10.91706 -10.86847 -10.75120 -9.98243 -9.70918 -8.75406 -7.72216 -4.97710 -0.58736 -0.33402 0.76744 0.83984 1.30420 1.34200 1.40314 1.88651 2.16857 2.39820 2.56010 2.59726 3.02975 3.33783 3.49242 3.54656 3.82442 3.93526 4.07123 4.16652 4.19851 4.36819 4.37892 4.46903 4.54518 4.57340 4.68381 4.74893 4.85008 4.87327 4.89401 4.90818 5.03441 5.08576 5.14203 5.17322 5.20419 5.35443 5.37080 5.42787 5.58299 5.63685 5.69300 6.34174 6.40973 6.50908 6.85096 7.11625 7.50112 8.26449 8.50883 9.41872 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011212 B = 0.005274 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.647261 B = 5307.918931 C = 6815.707813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.158 3.842 3 C -0.197 4.197 4 C 0.205 3.795 5 N -0.483 5.483 6 C 0.422 3.578 7 N -0.465 5.465 8 C 0.221 3.779 9 C 0.614 3.386 10 O -0.564 6.564 11 N -0.659 5.659 12 C 0.142 3.858 13 H 0.066 0.934 14 C -0.152 4.152 15 C -0.119 4.119 16 C 0.160 3.840 17 H 0.030 0.970 18 C -0.152 4.152 19 N -0.720 5.720 20 C -0.239 4.239 21 H 0.052 0.948 22 C -0.047 4.047 23 N -0.896 5.896 24 Si 0.926 3.074 25 H -0.279 1.279 26 H -0.319 1.319 27 H -0.291 1.291 28 N -0.313 5.313 29 N -0.334 5.334 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.234 0.766 34 H 0.240 0.760 35 H 0.413 0.587 36 H 0.039 0.961 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.027 0.973 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.374 0.626 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 6.381 10.216 13.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.042 3.958 3 C -0.220 4.220 4 C 0.020 3.980 5 N -0.199 5.199 6 C 0.061 3.939 7 N -0.197 5.197 8 C -0.062 4.062 9 C 0.395 3.605 10 O -0.442 6.442 11 N -0.310 5.310 12 C 0.039 3.961 13 H 0.084 0.916 14 C -0.210 4.210 15 C -0.157 4.157 16 C 0.051 3.949 17 H 0.048 0.952 18 C -0.211 4.211 19 N -0.364 5.364 20 C -0.372 4.372 21 H 0.070 0.930 22 C -0.244 4.244 23 N -0.544 5.544 24 Si 0.760 3.240 25 H -0.204 1.204 26 H -0.248 1.248 27 H -0.218 1.218 28 N -0.150 5.150 29 N -0.117 5.117 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.250 0.750 34 H 0.256 0.744 35 H 0.252 0.748 36 H 0.059 0.941 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.209 0.791 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.658 5.030 10.050 12.582 hybrid contribution -0.659 1.315 -1.311 1.971 sum -6.317 6.345 8.738 12.511 Atomic orbital electron populations 1.21156 0.84236 1.05918 1.05801 1.21942 0.98630 0.81557 0.93658 1.22514 0.95137 0.98600 1.05796 1.24653 0.93214 0.95756 0.84340 1.68124 1.37372 0.95638 1.18741 1.22993 0.78806 0.94225 0.97850 1.70910 1.27419 0.97012 1.24380 1.24142 0.86568 0.97134 0.98390 1.16381 0.84880 0.82276 0.76977 1.90702 1.34743 1.65819 1.52902 1.45869 1.07158 1.08256 1.69718 1.21216 0.99402 0.77593 0.97908 0.91554 1.22130 1.01714 1.02794 0.94400 1.22159 0.95375 1.03326 0.94865 1.20528 0.95693 0.84024 0.94612 0.95200 1.22252 0.98892 1.00210 0.99792 1.42515 1.75622 1.00967 1.17271 1.19121 1.33751 0.89427 0.94934 0.92980 1.25093 1.03682 0.97098 0.98547 1.69749 1.51426 1.03697 1.29481 0.85778 0.76774 0.78810 0.82644 1.20448 1.24802 1.21831 1.78527 1.20108 0.84720 1.31599 1.49196 1.09472 1.06305 1.46740 0.87155 0.92294 0.84426 0.74972 0.74392 0.74820 0.94132 0.88509 0.91295 0.90575 0.86348 0.95419 0.93460 0.91007 0.79119 0.95029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 10.13 71.24 0.72 -1.19 16 2 C 0.16 3.93 6.86 41.29 0.28 4.22 16 3 C -0.20 -3.02 9.72 22.15 0.22 -2.81 16 4 C 0.20 4.15 11.27 85.25 0.96 5.11 16 5 N -0.48 -17.24 10.48 -197.53 -2.07 -19.31 16 6 C 0.42 18.24 8.99 261.57 2.35 20.59 16 7 N -0.47 -22.83 10.08 -192.62 -1.94 -24.77 16 8 C 0.22 10.86 7.92 137.40 1.09 11.94 16 9 C 0.61 29.31 7.81 86.87 0.68 29.98 16 10 O -0.56 -28.50 16.73 -3.81 -0.06 -28.56 16 11 N -0.66 -27.26 3.80 -445.14 -1.69 -28.95 16 12 C 0.14 4.75 2.57 44.99 0.12 4.87 16 13 H 0.07 2.50 7.58 -2.39 -0.02 2.48 16 14 C -0.15 -4.00 9.48 71.98 0.68 -3.31 16 15 C -0.12 -3.47 4.43 30.60 0.14 -3.33 16 16 C 0.16 6.10 2.89 44.99 0.13 6.23 16 17 H 0.03 1.24 8.08 -2.38 -0.02 1.22 16 18 C -0.15 -5.15 9.49 71.98 0.68 -4.47 16 19 N -0.72 -34.95 3.84 -322.94 -1.24 -36.19 16 20 C -0.24 -13.50 9.93 84.04 0.83 -12.67 16 21 H 0.05 3.01 7.83 -2.91 -0.02 2.98 16 22 C -0.05 -2.77 5.50 84.86 0.47 -2.30 16 23 N -0.90 -52.98 12.25 21.65 0.27 -52.71 16 24 Si 0.93 49.00 29.55 68.60 2.03 51.03 16 25 H -0.28 -14.41 7.11 99.48 0.71 -13.71 16 26 H -0.32 -17.59 7.11 99.48 0.71 -16.88 16 27 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 28 N -0.31 -14.43 12.67 -52.61 -0.67 -15.10 16 29 N -0.33 -12.93 3.91 -185.76 -0.73 -13.66 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.14 1.04 8.09 -2.38 -0.02 1.02 16 33 H 0.23 0.46 8.06 -2.91 -0.02 0.44 16 34 H 0.24 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.41 18.03 6.18 -92.71 -0.57 17.45 16 36 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.12 2.52 8.14 -2.39 -0.02 2.51 16 41 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.37 19.04 5.70 -92.71 -0.53 18.51 16 45 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -87.14 380.93 3.16 -83.98 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.07 Total: 31.38 kcal Atomic # 6 Polarization: 43.51 SS G_CDS: 9.35 Total: 52.86 kcal Atomic # 7 Polarization: -182.62 SS G_CDS: -8.07 Total: -190.69 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.06 Total: -28.56 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.03 kcal Total: -87.14 3.16 -83.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136078399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.951 kcal (2) G-P(sol) polarization free energy of solvation -87.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds