Wall clock time and date at job start Tue Mar 31 2020 18:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.53005 * 109.46902 * 240.00026 * 2 1 3 5 5 C 1.53000 * 109.46867 * 175.00512 * 4 2 1 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 2 7 7 C 1.53002 * 109.47233 * 175.00027 * 5 4 2 8 8 N 1.46499 * 109.46840 * 294.99527 * 5 4 2 9 9 C 1.34778 * 119.99771 * 155.00060 * 8 5 4 10 10 O 1.21279 * 120.00041 * 0.02562 * 9 8 5 11 11 C 1.50703 * 119.99935 * 180.02562 * 9 8 5 12 12 C 1.50699 * 109.47042 * 180.02562 * 11 9 8 13 13 N 1.32616 * 125.18548 * 90.02491 * 12 11 9 14 14 C 1.32834 * 109.75439 * 179.97438 * 13 12 11 15 15 N 1.33819 * 132.49897 * 180.02562 * 14 13 12 16 16 C 1.31351 * 120.86335 * 179.97438 * 15 14 13 17 17 C 1.40040 * 120.31135 * 359.97438 * 16 15 14 18 18 C 1.35783 * 119.23967 * 0.02562 * 17 16 15 19 19 N 1.35975 * 119.02380 * 359.97438 * 18 17 16 20 20 N 1.31182 * 125.18393 * 269.71786 * 12 11 9 21 21 N 1.46501 * 109.46720 * 120.00215 * 2 1 3 22 22 C 1.36940 * 119.99786 * 274.99596 * 21 2 1 23 23 H 1.07997 * 119.99662 * 359.97438 * 22 21 2 24 24 C 1.38810 * 119.99761 * 180.02562 * 22 21 2 25 25 N 1.31619 * 120.00070 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99875 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47040 * 90.00051 * 26 24 22 28 28 H 1.48503 * 109.47262 * 210.00172 * 26 24 22 29 29 H 1.48500 * 109.47367 * 330.00364 * 26 24 22 30 30 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46912 * 300.00206 * 1 2 3 32 32 H 1.09005 * 109.46911 * 59.99817 * 1 2 3 33 33 H 1.08990 * 109.47398 * 55.00440 * 4 2 1 34 34 H 1.09001 * 109.47099 * 295.00133 * 4 2 1 35 35 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 36 36 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 38 38 H 0.96998 * 120.00630 * 335.00662 * 8 5 4 39 39 H 1.08999 * 109.47030 * 300.00189 * 11 9 8 40 40 H 1.08995 * 109.47091 * 59.99897 * 11 9 8 41 41 H 1.07998 * 119.84372 * 179.97438 * 16 15 14 42 42 H 1.08003 * 120.38294 * 180.02562 * 17 16 15 43 43 H 1.08000 * 120.48894 * 180.02562 * 18 17 16 44 44 H 0.97003 * 120.00154 * 95.00403 * 21 2 1 45 45 H 0.97002 * 119.99909 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 6 4.0852 -1.4384 -2.4925 8 7 3.9480 0.7892 -1.4925 9 6 5.1612 1.2133 -1.0867 10 8 5.9359 0.4337 -0.5740 11 6 5.5552 2.6564 -1.2701 12 6 6.9492 2.8680 -0.7380 13 7 8.0643 2.7403 -1.4443 14 6 9.1155 2.9973 -0.6740 15 7 10.4321 3.0031 -0.9137 16 6 11.2888 3.2979 0.0373 17 6 10.8354 3.6131 1.3242 18 6 9.5013 3.6097 1.5767 19 7 8.6402 3.3003 0.5709 20 7 7.2442 3.2122 0.4930 21 7 2.0183 -0.6907 1.1962 22 6 2.1491 -0.0075 2.3758 23 1 1.8927 1.0405 2.4241 24 6 2.6122 -0.6618 3.5090 25 7 2.9261 -1.9386 3.4497 26 14 2.7913 0.2702 5.1179 27 1 1.5238 0.1792 5.8865 28 1 3.8962 -0.3229 5.9133 29 1 3.0961 1.6954 4.8332 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6055 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2056 35 1 3.6546 -1.0595 -3.4193 36 1 5.1715 -1.3620 -2.5381 37 1 3.8001 -2.4820 -2.3595 38 1 3.3286 1.4128 -1.9028 39 1 5.5292 2.9081 -2.3302 40 1 4.8580 3.2950 -0.7278 41 1 12.3478 3.2972 -0.1743 42 1 11.5388 3.8561 2.1069 43 1 9.1294 3.8501 2.5618 44 1 2.2490 -1.6319 1.1526 45 1 3.2500 -2.3958 4.2415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146383265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:13 Heat of formation + Delta-G solvation = 109.102311 kcal Electronic energy + Delta-G solvation = -28296.445907 eV Core-core repulsion = 24352.046096 eV Total energy + Delta-G solvation = -3944.399811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.03673 -39.70225 -38.83770 -36.79149 -34.76043 -34.39603 -32.66223 -32.06933 -30.93116 -30.75943 -29.06303 -28.52829 -26.26985 -24.94158 -24.03643 -23.57555 -22.22204 -20.83701 -20.13008 -19.66724 -18.59158 -18.28740 -17.39735 -17.00931 -16.54485 -16.34423 -15.80903 -15.12140 -14.78657 -14.60693 -14.07069 -13.83814 -13.68450 -13.57134 -13.48548 -13.04754 -12.83546 -12.77360 -12.67635 -12.24914 -12.14344 -12.04072 -11.84516 -11.69065 -11.55363 -10.98898 -10.80348 -10.57220 -10.37801 -10.28202 -10.22876 -10.18976 -9.91599 -9.85570 -9.57850 -9.45249 -8.96888 -8.83637 -8.66752 -6.87535 -5.68868 -2.96475 0.18486 0.52332 1.72182 2.33339 2.94320 3.03190 3.21610 3.47107 3.52004 3.53358 3.53861 3.78492 4.02310 4.28937 4.54072 4.65745 4.76362 4.95131 5.04523 5.20522 5.23024 5.26368 5.47107 5.53332 5.56864 5.66370 5.75399 5.94229 5.95085 6.00451 6.04972 6.06654 6.09058 6.18189 6.33503 6.42265 6.48413 6.61577 6.76541 6.85455 6.97485 7.11294 7.20748 7.76228 7.79502 7.80884 8.49501 8.56392 9.60847 10.18699 10.52554 11.53992 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.003565 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.304901 B = 7851.899744 C = 9754.023685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.145 3.855 6 H 0.105 0.895 7 C -0.161 4.161 8 N -0.714 5.714 9 C 0.524 3.476 10 O -0.523 6.523 11 C -0.054 4.054 12 C 0.302 3.698 13 N -0.513 5.513 14 C 0.440 3.560 15 N -0.455 5.455 16 C 0.203 3.797 17 C -0.230 4.230 18 C 0.178 3.822 19 N -0.325 5.325 20 N -0.312 5.312 21 N -0.720 5.720 22 C -0.233 4.233 23 H 0.067 0.933 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.395 0.605 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.189 0.811 42 H 0.174 0.826 43 H 0.183 0.817 44 H 0.383 0.617 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.771 12.835 -10.539 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.041 3.959 6 H 0.123 0.877 7 C -0.219 4.219 8 N -0.365 5.365 9 C 0.307 3.693 10 O -0.398 6.398 11 C -0.097 4.097 12 C 0.020 3.980 13 N -0.244 5.244 14 C 0.079 3.921 15 N -0.170 5.170 16 C 0.017 3.983 17 C -0.255 4.255 18 C 0.039 3.961 19 N -0.105 5.105 20 N -0.143 5.143 21 N -0.362 5.362 22 C -0.364 4.364 23 H 0.085 0.915 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.733 3.267 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.229 0.771 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.206 0.794 42 H 0.191 0.809 43 H 0.200 0.800 44 H 0.216 0.784 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.750 12.134 -10.836 20.068 hybrid contribution -0.139 0.634 1.810 1.923 sum 11.611 12.767 -9.026 19.475 Atomic orbital electron populations 1.22459 0.99561 1.00786 0.99741 1.20229 0.91532 0.95564 0.86553 0.93591 1.22169 0.93689 1.02232 0.98824 1.21030 0.95055 0.79916 0.99873 0.87736 1.22183 1.01594 1.00136 0.98024 1.45841 1.16040 1.11834 1.62802 1.19850 0.82358 0.88713 0.78382 1.90772 1.50881 1.56151 1.42008 1.20066 0.88298 0.97122 1.04181 1.23523 0.95228 0.92193 0.87046 1.70657 0.95163 1.28083 1.30527 1.22709 0.92391 0.96085 0.80912 1.67987 0.97163 1.17852 1.33950 1.23554 1.00189 0.86970 0.87594 1.21927 0.94238 1.08682 1.00645 1.22213 0.88494 0.91676 0.93676 1.48783 1.07503 1.43056 1.11114 1.78661 0.84511 1.31439 1.19672 1.42400 1.77957 1.10559 1.05274 1.19154 1.36254 0.93648 0.87336 0.91504 1.24681 1.02254 0.95930 0.97921 1.69648 1.51021 1.08663 1.28684 0.86264 0.77160 0.78903 0.84355 1.21859 1.21920 1.20880 0.93565 0.92942 0.94699 0.91964 0.90639 0.93049 0.92517 0.91798 0.77089 0.85643 0.85774 0.79372 0.80870 0.79973 0.78369 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.17 3.24 2.84 -67.93 -0.19 3.05 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.00 4.29 -26.73 -0.11 -2.11 16 5 C 0.15 2.40 2.52 -67.93 -0.17 2.23 16 6 H 0.10 2.30 7.06 -51.93 -0.37 1.94 16 7 C -0.16 -2.32 9.48 37.16 0.35 -1.97 16 8 N -0.71 -10.45 4.45 -53.80 -0.24 -10.68 16 9 C 0.52 9.02 7.79 -10.98 -0.09 8.94 16 10 O -0.52 -11.89 15.70 5.56 0.09 -11.80 16 11 C -0.05 -0.73 6.33 -29.03 -0.18 -0.91 16 12 C 0.30 5.14 6.59 -157.01 -1.03 4.11 16 13 N -0.51 -9.15 11.25 -11.80 -0.13 -9.28 16 14 C 0.44 7.07 8.99 -323.13 -2.91 4.16 16 15 N -0.46 -5.90 10.48 -13.82 -0.14 -6.05 16 16 C 0.20 1.47 11.27 -17.08 -0.19 1.28 16 17 C -0.23 -1.33 10.06 -39.79 -0.40 -1.73 16 18 C 0.18 1.66 11.32 -16.59 -0.19 1.47 16 19 N -0.33 -4.85 3.91 -13.84 -0.05 -4.90 16 20 N -0.31 -5.49 12.78 32.39 0.41 -5.08 16 21 N -0.72 -17.86 4.49 -53.42 -0.24 -18.10 16 22 C -0.23 -6.54 9.93 -15.06 -0.15 -6.68 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 26 Si 0.90 23.24 29.55 -169.99 -5.02 18.22 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 29 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16 39 H 0.13 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.19 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.17 0.21 8.06 -52.48 -0.42 -0.21 16 43 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.38 10.24 7.80 -40.82 -0.32 9.92 16 45 H 0.25 7.68 8.31 -40.82 -0.34 7.35 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -41.28 386.12 -10.27 -51.55 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.47 Total: 9.67 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -5.01 Total: 8.87 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: 0.33 Total: -82.33 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -41.28 -10.27 -51.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146383265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.652 kcal (2) G-P(sol) polarization free energy of solvation -41.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds