Wall clock time and date at job start Tue Mar 31 2020 18:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47460 * 2 1 4 4 C 1.53005 * 109.46902 * 240.00026 * 2 1 3 5 5 C 1.53000 * 109.46867 * 175.00512 * 4 2 1 6 6 H 1.09002 * 109.47398 * 54.99853 * 5 4 2 7 7 C 1.53002 * 109.47233 * 175.00027 * 5 4 2 8 8 N 1.46499 * 109.46840 * 294.99527 * 5 4 2 9 9 C 1.34778 * 119.99771 * 155.00060 * 8 5 4 10 10 O 1.21279 * 120.00041 * 0.02562 * 9 8 5 11 11 C 1.50703 * 119.99935 * 180.02562 * 9 8 5 12 12 C 1.50699 * 109.47042 * 180.02562 * 11 9 8 13 13 N 1.32616 * 125.18548 * 90.02491 * 12 11 9 14 14 C 1.32834 * 109.75439 * 179.97438 * 13 12 11 15 15 N 1.33819 * 132.49897 * 180.02562 * 14 13 12 16 16 C 1.31351 * 120.86335 * 179.97438 * 15 14 13 17 17 C 1.40040 * 120.31135 * 359.97438 * 16 15 14 18 18 C 1.35783 * 119.23967 * 0.02562 * 17 16 15 19 19 N 1.35975 * 119.02380 * 359.97438 * 18 17 16 20 20 N 1.31182 * 125.18393 * 269.71786 * 12 11 9 21 21 N 1.46501 * 109.46720 * 120.00215 * 2 1 3 22 22 C 1.36940 * 119.99786 * 274.99596 * 21 2 1 23 23 H 1.07997 * 119.99662 * 359.97438 * 22 21 2 24 24 C 1.38810 * 119.99761 * 180.02562 * 22 21 2 25 25 N 1.31619 * 120.00070 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99875 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47040 * 90.00051 * 26 24 22 28 28 H 1.48503 * 109.47262 * 210.00172 * 26 24 22 29 29 H 1.48500 * 109.47367 * 330.00364 * 26 24 22 30 30 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46912 * 300.00206 * 1 2 3 32 32 H 1.09005 * 109.46911 * 59.99817 * 1 2 3 33 33 H 1.08990 * 109.47398 * 55.00440 * 4 2 1 34 34 H 1.09001 * 109.47099 * 295.00133 * 4 2 1 35 35 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 36 36 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 38 38 H 0.96998 * 120.00630 * 335.00662 * 8 5 4 39 39 H 1.08999 * 109.47030 * 300.00189 * 11 9 8 40 40 H 1.08995 * 109.47091 * 59.99897 * 11 9 8 41 41 H 1.07998 * 119.84372 * 179.97438 * 16 15 14 42 42 H 1.08003 * 120.38294 * 180.02562 * 17 16 15 43 43 H 1.08000 * 120.48894 * 180.02562 * 18 17 16 44 44 H 0.97003 * 120.00154 * 95.00403 * 21 2 1 45 45 H 0.97002 * 119.99909 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 6 4.0852 -1.4384 -2.4925 8 7 3.9480 0.7892 -1.4925 9 6 5.1612 1.2133 -1.0867 10 8 5.9359 0.4337 -0.5740 11 6 5.5552 2.6564 -1.2701 12 6 6.9492 2.8680 -0.7380 13 7 8.0643 2.7403 -1.4443 14 6 9.1155 2.9973 -0.6740 15 7 10.4321 3.0031 -0.9137 16 6 11.2888 3.2979 0.0373 17 6 10.8354 3.6131 1.3242 18 6 9.5013 3.6097 1.5767 19 7 8.6402 3.3003 0.5709 20 7 7.2442 3.2122 0.4930 21 7 2.0183 -0.6907 1.1962 22 6 2.1491 -0.0075 2.3758 23 1 1.8927 1.0405 2.4241 24 6 2.6122 -0.6618 3.5090 25 7 2.9261 -1.9386 3.4497 26 14 2.7913 0.2702 5.1179 27 1 1.5238 0.1792 5.8865 28 1 3.8962 -0.3229 5.9133 29 1 3.0961 1.6954 4.8332 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6055 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2056 35 1 3.6546 -1.0595 -3.4193 36 1 5.1715 -1.3620 -2.5381 37 1 3.8001 -2.4820 -2.3595 38 1 3.3286 1.4128 -1.9028 39 1 5.5292 2.9081 -2.3302 40 1 4.8580 3.2950 -0.7278 41 1 12.3478 3.2972 -0.1743 42 1 11.5388 3.8561 2.1069 43 1 9.1294 3.8501 2.5618 44 1 2.2490 -1.6319 1.1526 45 1 3.2500 -2.3958 4.2415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146383265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:12 Heat of formation + Delta-G solvation = 78.769718 kcal Electronic energy + Delta-G solvation = -28297.761227 eV Core-core repulsion = 24352.046096 eV Total energy + Delta-G solvation = -3945.715131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.00892 -40.97692 -39.78666 -38.30678 -36.06755 -35.64739 -34.08210 -33.58061 -32.13291 -31.82089 -30.49706 -30.00223 -27.58066 -25.76623 -25.65241 -24.94313 -23.41188 -22.11273 -21.41032 -21.17553 -19.49891 -19.31204 -19.15270 -18.39288 -17.48027 -17.36725 -16.97615 -16.62741 -16.24660 -15.69410 -15.54139 -15.42176 -15.07182 -14.78907 -14.42814 -14.34127 -14.18487 -13.79338 -13.73559 -13.62596 -13.41428 -13.26955 -13.10946 -13.03641 -12.92730 -12.78386 -12.67512 -12.23180 -12.22020 -11.81880 -11.55657 -11.40836 -11.39320 -11.08421 -11.05719 -10.91319 -10.64546 -10.00261 -9.93203 -8.94659 -7.92848 -5.17683 -0.53149 -0.34148 0.85447 1.29684 1.39494 1.42300 1.49231 1.65304 2.11859 2.33711 2.43843 2.55079 2.81680 3.35343 3.41972 3.47733 3.78935 3.90480 3.95088 4.04337 4.11909 4.17265 4.26466 4.40101 4.42060 4.52257 4.56457 4.70252 4.81082 4.84163 4.84538 4.96438 5.01075 5.05175 5.08075 5.12519 5.24536 5.35060 5.36293 5.44107 5.51528 5.64637 5.67466 6.30573 6.35672 6.61422 6.76117 7.34103 7.36049 8.17549 8.36208 9.31255 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.003565 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.304901 B = 7851.899744 C = 9754.023685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.047 0.953 4 C -0.116 4.116 5 C 0.148 3.852 6 H 0.041 0.959 7 C -0.151 4.151 8 N -0.697 5.697 9 C 0.518 3.482 10 O -0.589 6.589 11 C -0.046 4.046 12 C 0.285 3.715 13 N -0.555 5.555 14 C 0.418 3.582 15 N -0.493 5.493 16 C 0.214 3.786 17 C -0.188 4.188 18 C 0.138 3.862 19 N -0.335 5.335 20 N -0.356 5.356 21 N -0.732 5.732 22 C -0.223 4.223 23 H 0.071 0.929 24 C -0.081 4.081 25 N -0.971 5.971 26 Si 0.960 3.040 27 H -0.283 1.283 28 H -0.302 1.302 29 H -0.273 1.273 30 H 0.040 0.960 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.031 0.969 37 H 0.067 0.933 38 H 0.418 0.582 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.244 0.756 42 H 0.233 0.767 43 H 0.206 0.794 44 H 0.368 0.632 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.402 15.141 -11.493 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.065 0.935 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.060 0.940 7 C -0.209 4.209 8 N -0.349 5.349 9 C 0.303 3.697 10 O -0.468 6.468 11 C -0.088 4.088 12 C 0.003 3.997 13 N -0.289 5.289 14 C 0.058 3.942 15 N -0.210 5.210 16 C 0.031 3.969 17 C -0.212 4.212 18 C 0.002 3.998 19 N -0.114 5.114 20 N -0.188 5.188 21 N -0.372 5.372 22 C -0.355 4.355 23 H 0.089 0.911 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.791 3.209 27 H -0.210 1.210 28 H -0.229 1.229 29 H -0.199 1.199 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.256 0.744 39 H 0.180 0.820 40 H 0.165 0.835 41 H 0.260 0.740 42 H 0.250 0.750 43 H 0.223 0.777 44 H 0.200 0.800 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.351 14.524 -11.816 22.430 hybrid contribution -0.117 -0.004 2.109 2.113 sum 12.234 14.519 -9.707 21.324 Atomic orbital electron populations 1.22302 0.97621 1.00801 1.00817 1.20561 0.92692 0.95432 0.85892 0.93509 1.22076 0.92372 1.02249 0.98762 1.20811 0.95785 0.81022 0.98063 0.94036 1.22077 1.00056 1.00260 0.98499 1.45687 1.15726 1.11639 1.61888 1.20532 0.82192 0.89842 0.77127 1.90741 1.52898 1.58174 1.45035 1.20196 0.87387 0.94497 1.06687 1.23981 0.96240 0.92346 0.87086 1.70530 0.96084 1.30096 1.32162 1.22996 0.93334 0.96473 0.81371 1.68121 0.96172 1.20381 1.36297 1.24691 1.01699 0.83283 0.87208 1.22682 0.93320 1.03926 1.01231 1.23130 0.89486 0.93134 0.94001 1.48836 1.06887 1.43595 1.12096 1.78431 0.86704 1.33250 1.20464 1.42628 1.78184 1.10061 1.06363 1.19532 1.33690 0.93828 0.88449 0.91066 1.25437 1.03678 0.96845 1.01269 1.69811 1.53294 1.10223 1.28948 0.85312 0.76880 0.78008 0.80738 1.21002 1.22905 1.19864 0.94092 0.95186 0.90250 0.87016 0.90747 0.89451 0.94999 0.91363 0.74420 0.81999 0.83474 0.74002 0.75034 0.77740 0.80016 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 9.49 71.98 0.68 -4.37 16 2 C 0.16 5.93 2.84 44.99 0.13 6.06 16 3 H 0.05 1.71 7.56 -2.39 -0.02 1.69 16 4 C -0.12 -3.31 4.29 30.60 0.13 -3.18 16 5 C 0.15 4.91 2.52 44.99 0.11 5.02 16 6 H 0.04 1.94 7.06 -2.39 -0.02 1.93 16 7 C -0.15 -4.25 9.48 71.98 0.68 -3.57 16 8 N -0.70 -19.97 4.45 -442.53 -1.97 -21.94 16 9 C 0.52 18.43 7.79 87.66 0.68 19.11 16 10 O -0.59 -28.70 15.70 -3.03 -0.05 -28.75 16 11 C -0.05 -1.25 6.33 29.10 0.18 -1.07 16 12 C 0.29 10.23 6.59 138.68 0.91 11.14 16 13 N -0.56 -20.93 11.25 -191.24 -2.15 -23.08 16 14 C 0.42 13.94 8.99 261.60 2.35 16.29 16 15 N -0.49 -12.53 10.48 -197.64 -2.07 -14.60 16 16 C 0.21 2.41 11.27 85.20 0.96 3.37 16 17 C -0.19 -1.44 10.06 22.14 0.22 -1.22 16 18 C 0.14 2.41 11.32 83.48 0.94 3.36 16 19 N -0.33 -10.28 3.91 -197.70 -0.77 -11.06 16 20 N -0.36 -13.23 12.78 -51.45 -0.66 -13.88 16 21 N -0.73 -37.09 4.49 -322.93 -1.45 -38.54 16 22 C -0.22 -12.75 9.93 84.03 0.83 -11.91 16 23 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 24 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 25 N -0.97 -62.85 13.06 21.65 0.28 -62.57 16 26 Si 0.96 48.99 29.55 68.60 2.03 51.02 16 27 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 28 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 29 H -0.27 -13.32 7.11 99.48 0.71 -12.62 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.42 7.99 8.60 -92.71 -0.80 7.19 16 39 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.24 -0.15 8.06 -2.91 -0.02 -0.17 16 42 H 0.23 -0.98 8.06 -2.91 -0.02 -1.01 16 43 H 0.21 2.37 8.06 -2.91 -0.02 2.34 16 44 H 0.37 20.54 7.80 -92.71 -0.72 19.82 16 45 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -101.65 386.12 2.00 -99.65 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.49 Total: 29.13 kcal Atomic # 6 Polarization: 25.32 SS G_CDS: 9.30 Total: 34.62 kcal Atomic # 7 Polarization: -176.88 SS G_CDS: -8.79 Total: -185.67 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.05 Total: -28.75 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Total: -101.65 2.00 -99.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146383265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.425 kcal (2) G-P(sol) polarization free energy of solvation -101.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds