Wall clock time and date at job start Tue Mar 31 2020 18:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21278 * 119.99715 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00002 * 179.97438 * 18 17 2 21 21 C 1.50694 * 109.47244 * 180.02562 * 20 18 17 22 22 N 1.32616 * 125.18699 * 90.02157 * 21 20 18 23 23 C 1.32824 * 109.75797 * 179.97438 * 22 21 20 24 24 N 1.33825 * 132.50155 * 180.02562 * 23 22 21 25 25 C 1.31352 * 120.86288 * 179.97438 * 24 23 22 26 26 C 1.40041 * 120.31167 * 0.02562 * 25 24 23 27 27 C 1.35776 * 119.24455 * 359.97438 * 26 25 24 28 28 N 1.35982 * 119.01891 * 0.02562 * 27 26 25 29 29 N 1.31189 * 125.18607 * 269.72322 * 21 20 18 30 30 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 32 32 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 33 33 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 34 34 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 35 35 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 36 36 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 37 37 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 38 38 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 39 39 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 40 40 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 41 41 H 1.09000 * 109.47377 * 300.00300 * 20 18 17 42 42 H 1.09002 * 109.47170 * 60.00352 * 20 18 17 43 43 H 1.07994 * 119.84170 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.37802 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.49193 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8582 1.1583 2.4117 20 6 2.6487 -0.7288 3.5878 21 6 2.6990 0.2393 4.7415 22 7 1.7065 0.4683 5.5907 23 6 2.0813 1.3759 6.4852 24 7 1.4520 1.9322 7.5270 25 6 2.0527 2.8275 8.2773 26 6 3.3685 3.2166 7.9970 27 6 4.0150 2.6575 6.9420 28 7 3.3655 1.7336 6.1846 29 7 3.7331 0.9801 5.0621 30 1 -0.3635 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2618 -2.1369 34 1 1.7515 -1.7716 -1.2055 35 1 3.6263 -0.6888 -3.4657 36 1 5.1507 -1.1479 -2.6701 37 1 3.7721 -2.2742 -2.6699 38 1 3.6646 -2.0586 0.2387 39 1 4.4079 -2.8955 1.5989 40 1 2.2489 -1.6318 1.1527 41 1 1.9758 -1.5506 3.8326 42 1 3.6479 -1.1214 3.3987 43 1 1.5292 3.2662 9.1138 44 1 3.8636 3.9523 8.6135 45 1 5.0301 2.9425 6.7078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146383268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:26 Heat of formation + Delta-G solvation = 116.345818 kcal Electronic energy + Delta-G solvation = -29094.585922 eV Core-core repulsion = 25150.500213 eV Total energy + Delta-G solvation = -3944.085709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.81849 -39.52726 -38.68188 -36.89037 -34.58570 -34.33339 -32.64544 -32.15176 -30.77310 -30.57608 -28.91562 -28.17727 -26.37828 -24.74684 -23.82739 -23.50364 -22.08281 -20.67779 -20.35661 -19.59510 -18.37248 -18.07664 -17.42656 -16.89169 -16.37843 -16.13228 -15.77930 -15.08634 -14.78391 -14.44694 -14.17135 -13.67814 -13.49197 -13.44064 -13.39655 -13.07679 -12.93335 -12.59161 -12.53455 -12.20128 -12.09035 -11.91352 -11.74124 -11.59940 -11.59394 -11.05788 -10.76163 -10.50506 -10.41315 -10.12774 -10.08654 -10.00597 -9.98665 -9.70054 -9.21864 -9.18331 -8.97596 -8.77220 -8.44148 -7.02635 -6.11274 -3.10903 0.35273 0.71711 1.94388 2.59081 3.19399 3.27045 3.40633 3.51766 3.56026 3.70998 3.76582 4.02826 4.16535 4.55741 4.66003 4.72272 4.97460 5.02370 5.18992 5.27925 5.40128 5.46151 5.56863 5.58544 5.63501 5.77897 5.81742 5.92526 5.94928 5.98476 6.08128 6.17274 6.17697 6.31887 6.33311 6.34782 6.44073 6.46541 6.53528 6.79725 6.98515 7.08688 7.38910 7.80873 8.04470 8.05485 8.71299 8.79006 9.18102 10.03027 10.19187 11.35235 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.004120 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.985339 B = 6794.894252 C = 8583.111418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 H 0.083 0.917 4 C -0.134 4.134 5 C 0.175 3.825 6 H 0.048 0.952 7 C -0.163 4.163 8 N -0.727 5.727 9 C -0.314 4.314 10 H 0.061 0.939 11 C -0.041 4.041 12 N -0.944 5.944 13 Si 1.070 2.930 14 H -0.285 1.285 15 H -0.298 1.298 16 H -0.296 1.296 17 N -0.697 5.697 18 C 0.541 3.459 19 O -0.553 6.553 20 C -0.062 4.062 21 C 0.312 3.688 22 N -0.514 5.514 23 C 0.435 3.565 24 N -0.455 5.455 25 C 0.200 3.800 26 C -0.235 4.235 27 C 0.178 3.822 28 N -0.328 5.328 29 N -0.307 5.307 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.361 0.639 39 H 0.249 0.751 40 H 0.401 0.599 41 H 0.120 0.880 42 H 0.148 0.852 43 H 0.187 0.813 44 H 0.172 0.828 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 8.567 7.527 13.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.101 0.899 4 C -0.173 4.173 5 C 0.065 3.935 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.372 5.372 9 C -0.446 4.446 10 H 0.079 0.921 11 C -0.238 4.238 12 N -0.591 5.591 13 Si 0.901 3.099 14 H -0.211 1.211 15 H -0.225 1.225 16 H -0.223 1.223 17 N -0.349 5.349 18 C 0.326 3.674 19 O -0.431 6.431 20 C -0.104 4.104 21 C 0.031 3.969 22 N -0.245 5.245 23 C 0.074 3.926 24 N -0.170 5.170 25 C 0.013 3.987 26 C -0.260 4.260 27 C 0.040 3.960 28 N -0.107 5.107 29 N -0.136 5.136 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.195 0.805 39 H 0.060 0.940 40 H 0.237 0.763 41 H 0.138 0.862 42 H 0.166 0.834 43 H 0.204 0.796 44 H 0.189 0.811 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.816 8.516 8.053 13.084 hybrid contribution -0.161 0.195 -1.097 1.126 sum -5.977 8.712 6.956 12.649 Atomic orbital electron populations 1.22206 0.96120 1.01719 1.02029 1.20799 0.92574 0.97666 0.84245 0.89936 1.22225 0.97784 1.00588 0.96694 1.20216 0.89545 0.95857 0.87876 0.93349 1.22403 1.01608 1.00238 0.98050 1.42473 1.19056 1.39986 1.35687 1.20018 0.94169 1.15950 1.14435 0.92062 1.25516 1.05337 0.97155 0.95796 1.70986 1.14111 1.30573 1.43467 0.83358 0.75054 0.75351 0.76092 1.21093 1.22539 1.22336 1.45832 1.66371 1.14060 1.08652 1.19773 0.76659 0.86842 0.84146 1.90656 1.51034 1.16045 1.85388 1.20198 1.07897 0.95130 0.87197 1.23657 0.85426 0.93592 0.94209 1.70678 1.28826 1.18465 1.06558 1.22723 0.81104 0.94376 0.94355 1.67965 1.34332 1.11286 1.03385 1.23500 0.91440 0.88630 0.95142 1.21864 0.97565 1.06265 1.00309 1.22178 0.99410 0.85982 0.88424 1.48888 1.13440 1.27382 1.21021 1.78788 1.22193 1.12581 1.00085 0.92708 0.92320 0.92112 0.90675 0.91759 0.94487 0.92825 0.93705 0.80462 0.93960 0.76252 0.86243 0.83447 0.79584 0.81092 0.80139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.48 37.15 0.35 -1.92 16 2 C 0.15 2.50 2.57 -67.93 -0.17 2.33 16 3 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 4 C -0.13 -2.02 4.43 -26.73 -0.12 -2.14 16 5 C 0.17 3.28 2.89 -67.93 -0.20 3.08 16 6 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 7 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 8 N -0.73 -16.26 3.84 -53.43 -0.21 -16.47 16 9 C -0.31 -8.25 9.93 -15.06 -0.15 -8.40 16 10 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 11 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 12 N -0.94 -25.95 13.40 55.49 0.74 -25.21 16 13 Si 1.07 25.58 29.92 -169.99 -5.09 20.50 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 17 N -0.70 -12.61 3.80 -53.81 -0.20 -12.81 16 18 C 0.54 11.21 7.79 -10.98 -0.09 11.12 16 19 O -0.55 -13.12 15.70 5.56 0.09 -13.03 16 20 C -0.06 -1.23 6.33 -29.04 -0.18 -1.42 16 21 C 0.31 6.59 6.59 -157.00 -1.03 5.56 16 22 N -0.51 -10.67 11.25 -11.80 -0.13 -10.80 16 23 C 0.44 7.94 8.99 -323.14 -2.91 5.04 16 24 N -0.46 -6.65 10.48 -13.82 -0.14 -6.79 16 25 C 0.20 1.72 11.27 -17.08 -0.19 1.52 16 26 C -0.23 -1.66 10.06 -39.79 -0.40 -2.06 16 27 C 0.18 1.95 11.32 -16.59 -0.19 1.77 16 28 N -0.33 -5.62 3.91 -13.84 -0.05 -5.67 16 29 N -0.31 -6.45 12.78 32.39 0.41 -6.04 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.36 7.99 4.54 -40.82 -0.19 7.80 16 39 H 0.25 6.56 6.77 -40.82 -0.28 6.28 16 40 H 0.40 7.03 6.51 -40.82 -0.27 6.76 16 41 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 42 H 0.15 3.25 7.85 -51.93 -0.41 2.84 16 43 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.17 0.39 8.06 -52.49 -0.42 -0.03 16 45 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -36.69 379.64 -10.11 -46.80 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -6.23 Total: 13.01 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: -5.02 Total: 10.80 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: 0.42 Total: -83.79 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.09 Total: 20.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.69 -10.11 -46.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146383268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.145 kcal (2) G-P(sol) polarization free energy of solvation -36.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds