Wall clock time and date at job start Tue Mar 31 2020 18:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21278 * 119.99715 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00002 * 179.97438 * 18 17 2 21 21 C 1.50694 * 109.47244 * 180.02562 * 20 18 17 22 22 N 1.32616 * 125.18699 * 90.02157 * 21 20 18 23 23 C 1.32824 * 109.75797 * 179.97438 * 22 21 20 24 24 N 1.33825 * 132.50155 * 180.02562 * 23 22 21 25 25 C 1.31352 * 120.86288 * 179.97438 * 24 23 22 26 26 C 1.40041 * 120.31167 * 0.02562 * 25 24 23 27 27 C 1.35776 * 119.24455 * 359.97438 * 26 25 24 28 28 N 1.35982 * 119.01891 * 0.02562 * 27 26 25 29 29 N 1.31189 * 125.18607 * 269.72322 * 21 20 18 30 30 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 32 32 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 33 33 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 34 34 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 35 35 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 36 36 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 37 37 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 38 38 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 39 39 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 40 40 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 41 41 H 1.09000 * 109.47377 * 300.00300 * 20 18 17 42 42 H 1.09002 * 109.47170 * 60.00352 * 20 18 17 43 43 H 1.07994 * 119.84170 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.37802 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.49193 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8582 1.1583 2.4117 20 6 2.6487 -0.7288 3.5878 21 6 2.6990 0.2393 4.7415 22 7 1.7065 0.4683 5.5907 23 6 2.0813 1.3759 6.4852 24 7 1.4520 1.9322 7.5270 25 6 2.0527 2.8275 8.2773 26 6 3.3685 3.2166 7.9970 27 6 4.0150 2.6575 6.9420 28 7 3.3655 1.7336 6.1846 29 7 3.7331 0.9801 5.0621 30 1 -0.3635 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2618 -2.1369 34 1 1.7515 -1.7716 -1.2055 35 1 3.6263 -0.6888 -3.4657 36 1 5.1507 -1.1479 -2.6701 37 1 3.7721 -2.2742 -2.6699 38 1 3.6646 -2.0586 0.2387 39 1 4.4079 -2.8955 1.5989 40 1 2.2489 -1.6318 1.1527 41 1 1.9758 -1.5506 3.8326 42 1 3.6479 -1.1214 3.3987 43 1 1.5292 3.2662 9.1138 44 1 3.8636 3.9523 8.6135 45 1 5.0301 2.9425 6.7078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146383268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:24 Heat of formation + Delta-G solvation = 91.953593 kcal Electronic energy + Delta-G solvation = -29095.643649 eV Core-core repulsion = 25150.500213 eV Total energy + Delta-G solvation = -3945.143435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.01043 -41.02936 -39.80434 -38.46405 -36.04497 -35.63851 -34.33517 -33.51057 -32.14363 -31.81600 -30.38676 -29.76212 -27.67443 -25.71844 -25.48229 -24.92773 -23.45028 -22.07312 -21.82405 -21.13344 -19.47912 -19.37953 -19.14578 -18.36317 -17.51458 -17.37451 -16.96768 -16.76412 -16.18858 -15.94364 -15.50505 -15.45825 -15.03420 -14.84131 -14.54966 -14.35755 -14.19056 -13.76833 -13.71590 -13.59492 -13.49943 -13.22884 -13.10410 -13.04017 -12.89233 -12.72513 -12.54743 -12.21075 -11.90739 -11.80562 -11.64042 -11.39642 -11.12579 -11.09047 -11.04624 -10.88646 -10.64703 -9.99098 -9.93457 -8.92575 -8.22383 -5.15543 -0.51345 -0.32425 0.87400 1.29843 1.55162 1.61969 1.63374 1.78080 2.10050 2.33920 2.43542 2.71570 2.83376 3.37251 3.49398 3.49936 3.64366 3.83188 3.95108 3.95918 4.07826 4.13626 4.27262 4.28912 4.46810 4.47861 4.54898 4.59846 4.75285 4.79173 4.82229 4.83441 4.98363 5.03457 5.03832 5.06041 5.08535 5.29403 5.33088 5.37639 5.53843 5.63378 5.71812 6.37039 6.51252 6.66544 6.76653 7.19847 7.25607 8.10581 8.23544 9.28014 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.004120 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.985339 B = 6794.894252 C = 8583.111418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.052 0.948 4 C -0.119 4.119 5 C 0.167 3.833 6 H 0.024 0.976 7 C -0.152 4.152 8 N -0.731 5.731 9 C -0.315 4.315 10 H 0.046 0.954 11 C -0.083 4.083 12 N -0.961 5.961 13 Si 1.102 2.898 14 H -0.292 1.292 15 H -0.284 1.284 16 H -0.298 1.298 17 N -0.687 5.687 18 C 0.537 3.463 19 O -0.589 6.589 20 C -0.053 4.053 21 C 0.294 3.706 22 N -0.556 5.556 23 C 0.419 3.581 24 N -0.491 5.491 25 C 0.214 3.786 26 C -0.185 4.185 27 C 0.137 3.863 28 N -0.335 5.335 29 N -0.354 5.354 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.049 0.951 38 H 0.362 0.638 39 H 0.249 0.751 40 H 0.404 0.596 41 H 0.139 0.861 42 H 0.122 0.878 43 H 0.247 0.753 44 H 0.237 0.763 45 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.115 10.142 8.535 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.070 0.930 4 C -0.157 4.157 5 C 0.059 3.941 6 H 0.042 0.958 7 C -0.212 4.212 8 N -0.376 5.376 9 C -0.447 4.447 10 H 0.064 0.936 11 C -0.276 4.276 12 N -0.610 5.610 13 Si 0.932 3.068 14 H -0.218 1.218 15 H -0.210 1.210 16 H -0.225 1.225 17 N -0.338 5.338 18 C 0.323 3.677 19 O -0.470 6.470 20 C -0.096 4.096 21 C 0.012 3.988 22 N -0.290 5.290 23 C 0.059 3.941 24 N -0.207 5.207 25 C 0.031 3.969 26 C -0.209 4.209 27 C 0.001 3.999 28 N -0.114 5.114 29 N -0.186 5.186 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.196 0.804 39 H 0.060 0.940 40 H 0.241 0.759 41 H 0.157 0.843 42 H 0.140 0.860 43 H 0.263 0.737 44 H 0.253 0.747 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.555 10.125 9.050 15.079 hybrid contribution 0.070 -0.038 -1.197 1.200 sum -6.485 10.086 7.853 14.334 Atomic orbital electron populations 1.22101 0.93621 1.02978 1.02213 1.20962 0.94461 0.96086 0.84158 0.92994 1.22141 0.94674 1.01752 0.97163 1.20422 0.92114 0.94143 0.87457 0.95768 1.22249 1.00015 1.00863 0.98097 1.42506 1.18052 1.40298 1.36772 1.20094 0.95510 1.15071 1.14061 0.93634 1.26303 1.07391 0.97500 0.96435 1.71016 1.14478 1.31356 1.44101 0.82900 0.73352 0.74750 0.75803 1.21793 1.21026 1.22521 1.45870 1.65369 1.14070 1.08541 1.19964 0.76343 0.86459 0.84978 1.90615 1.52909 1.17527 1.85995 1.20065 1.06644 0.95680 0.87170 1.23636 0.85986 0.94355 0.94789 1.70497 1.29748 1.20779 1.07963 1.22971 0.81754 0.94436 0.94972 1.68135 1.35276 1.13740 1.03599 1.24742 0.92203 0.85536 0.94387 1.22692 0.96325 1.04151 0.97717 1.23176 1.01282 0.85982 0.89430 1.48882 1.13728 1.28178 1.20617 1.78523 1.23323 1.14153 1.02624 0.90838 0.94679 0.89378 0.87084 0.90085 0.91094 0.95412 0.93171 0.80366 0.93996 0.75880 0.84270 0.85975 0.73713 0.74702 0.77716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.48 71.98 0.68 -3.34 16 2 C 0.15 4.84 2.57 44.99 0.12 4.96 16 3 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 4 C -0.12 -3.35 4.43 30.59 0.14 -3.22 16 5 C 0.17 6.20 2.89 44.99 0.13 6.33 16 6 H 0.02 1.02 8.08 -2.39 -0.02 1.00 16 7 C -0.15 -5.05 9.49 71.98 0.68 -4.37 16 8 N -0.73 -33.30 3.84 -322.95 -1.24 -34.54 16 9 C -0.32 -17.04 9.93 84.03 0.83 -16.21 16 10 H 0.05 2.56 7.83 -2.91 -0.02 2.54 16 11 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 12 N -0.96 -54.32 13.40 21.65 0.29 -54.03 16 13 Si 1.10 53.18 29.92 68.60 2.05 55.24 16 14 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 17 N -0.69 -25.74 3.80 -442.55 -1.68 -27.42 16 18 C 0.54 23.69 7.79 87.65 0.68 24.38 16 19 O -0.59 -29.84 15.70 -3.02 -0.05 -29.88 16 20 C -0.05 -2.30 6.33 29.10 0.18 -2.11 16 21 C 0.29 13.39 6.59 138.68 0.91 14.30 16 22 N -0.56 -24.64 11.25 -191.24 -2.15 -26.79 16 23 C 0.42 15.76 8.99 261.60 2.35 18.11 16 24 N -0.49 -13.77 10.48 -197.64 -2.07 -15.84 16 25 C 0.21 2.76 11.27 85.20 0.96 3.72 16 26 C -0.19 -1.71 10.06 22.14 0.22 -1.48 16 27 C 0.14 2.75 11.32 83.48 0.94 3.70 16 28 N -0.33 -11.79 3.91 -197.70 -0.77 -12.56 16 29 N -0.35 -15.96 12.78 -51.45 -0.66 -16.62 16 30 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.36 16.27 4.54 -92.71 -0.42 15.85 16 39 H 0.25 13.50 6.77 -92.71 -0.63 12.88 16 40 H 0.40 14.55 6.51 -92.71 -0.60 13.95 16 41 H 0.14 5.10 8.14 -2.39 -0.02 5.08 16 42 H 0.12 5.85 7.85 -2.39 -0.02 5.83 16 43 H 0.25 0.10 8.06 -2.91 -0.02 0.07 16 44 H 0.24 -0.82 8.06 -2.91 -0.02 -0.84 16 45 H 0.21 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -89.59 379.64 3.17 -86.42 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.14 Total: 35.38 kcal Atomic # 6 Polarization: 31.35 SS G_CDS: 9.31 Total: 40.66 kcal Atomic # 7 Polarization: -179.52 SS G_CDS: -8.28 Total: -187.80 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.05 Total: -29.88 kcal Atomic # 14 Polarization: 53.18 SS G_CDS: 2.05 Total: 55.24 kcal Total: -89.59 3.17 -86.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146383268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.369 kcal (2) G-P(sol) polarization free energy of solvation -89.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds