Wall clock time and date at job start Tue Mar 31 2020 16:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99757 * 2 1 4 4 C 1.52993 * 109.47052 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47143 * 174.78877 * 4 3 2 6 6 N 1.46502 * 109.45716 * 302.41663 * 5 4 3 7 7 C 1.34771 * 120.00225 * 299.50280 * 6 5 4 8 8 O 1.21287 * 119.99540 * 5.11612 * 7 6 5 9 9 C 1.50697 * 120.00015 * 185.11014 * 7 6 5 10 10 H 1.08996 * 115.54714 * 34.41813 * 9 7 6 11 11 C 1.52998 * 117.49624 * 248.75002 * 9 7 6 12 12 C 1.52996 * 117.49808 * 180.09086 * 9 7 6 13 13 F 1.39901 * 117.49935 * 214.97935 * 12 9 7 14 14 F 1.39903 * 117.49868 * 359.97438 * 12 9 7 15 15 C 1.53038 * 109.46038 * 182.45720 * 5 4 3 16 16 C 1.53194 * 109.31378 * 178.61272 * 15 5 4 17 17 N 1.46927 * 108.77104 * 54.63708 * 16 15 5 18 18 C 1.36940 * 120.62996 * 126.41227 * 17 16 15 19 19 H 1.07994 * 120.00427 * 212.23815 * 18 17 16 20 20 C 1.38813 * 119.99636 * 32.24431 * 18 17 16 21 21 N 1.31617 * 120.00315 * 11.35201 * 20 18 17 22 22 Si 1.86803 * 119.99744 * 191.35259 * 20 18 17 23 23 H 1.48503 * 109.47259 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47010 * 119.99882 * 22 20 18 25 25 H 1.48495 * 109.47190 * 239.99753 * 22 20 18 26 26 C 1.46927 * 118.74108 * 306.39202 * 17 16 15 27 27 C 1.53044 * 109.45782 * 62.39176 * 5 4 3 28 28 H 1.08997 * 109.47023 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47592 * 300.00150 * 1 2 3 30 30 H 1.09006 * 109.47112 * 60.00160 * 1 2 3 31 31 H 1.09001 * 109.46874 * 299.99813 * 3 2 1 32 32 H 1.09000 * 109.47257 * 59.99219 * 3 2 1 33 33 H 1.09007 * 109.46817 * 294.78745 * 4 3 2 34 34 H 1.08996 * 109.47265 * 54.78577 * 4 3 2 35 35 H 0.97005 * 119.99300 * 119.50530 * 6 5 4 36 36 H 1.08998 * 117.50209 * 359.97438 * 11 9 7 37 37 H 1.09003 * 117.49819 * 145.02168 * 11 9 7 38 38 H 1.08998 * 109.50042 * 298.56651 * 15 5 4 39 39 H 1.09001 * 109.49645 * 58.66337 * 15 5 4 40 40 H 1.08997 * 109.58711 * 294.85198 * 16 15 5 41 41 H 1.08999 * 109.58397 * 174.42180 * 16 15 5 42 42 H 0.96996 * 120.00320 * 180.02562 * 21 20 18 43 43 H 1.09006 * 109.58207 * 293.82192 * 26 17 16 44 44 H 1.08995 * 109.70435 * 173.47161 * 26 17 16 45 45 H 1.09000 * 109.49635 * 301.33291 * 27 5 4 46 46 H 1.08994 * 109.50073 * 61.43354 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1573 2.5766 -0.1304 6 7 3.6711 3.2149 -1.3562 7 6 3.9122 2.6454 -2.5537 8 8 4.4494 1.5596 -2.6116 9 6 3.5141 3.3578 -3.8206 10 1 3.5962 4.4444 -3.7945 11 6 2.3718 2.7551 -4.6408 12 6 3.8128 2.6583 -5.1480 13 9 4.1700 3.4623 -6.2358 14 9 4.4351 1.4065 -5.0929 15 6 5.6812 2.4504 -0.1914 16 6 6.2986 3.8426 -0.3573 17 7 5.8076 4.7094 0.7226 18 6 6.6847 5.3916 1.5230 19 1 6.4357 5.5835 2.5562 20 6 7.8937 5.8367 1.0062 21 7 8.1057 5.8054 -0.2924 22 14 9.2197 6.4802 2.1538 23 1 8.7366 6.4113 3.5564 24 1 10.4436 5.6514 2.0101 25 1 9.5329 7.8898 1.8073 26 6 4.3577 4.8306 0.9273 27 6 3.7621 3.4274 1.0788 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 -0.8900 32 1 1.6885 1.8465 0.8899 33 1 3.8632 0.7268 0.9339 34 1 3.8512 0.5653 -0.8387 35 1 3.1758 4.0474 -1.3058 36 1 1.9086 1.8431 -4.2643 37 1 1.7027 3.4451 -5.1548 38 1 6.0460 1.9982 0.7309 39 1 5.9608 1.8250 -1.0392 40 1 6.0069 4.2591 -1.3214 41 1 7.3848 3.7695 -0.3020 42 1 8.9507 6.1160 -0.6535 43 1 3.9078 5.3278 0.0679 44 1 4.1611 5.4104 1.8291 45 1 2.6758 3.4975 1.1350 46 1 4.1450 2.9660 1.9891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151108358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:45 Heat of formation + Delta-G solvation = -122.551114 kcal Electronic energy + Delta-G solvation = -30877.798361 eV Core-core repulsion = 26440.371366 eV Total energy + Delta-G solvation = -4437.426995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.65298 -47.29173 -40.44900 -38.14025 -37.46469 -35.58270 -34.54714 -32.08517 -31.46718 -30.17467 -28.91933 -26.59421 -25.19425 -24.46100 -23.17179 -22.67065 -22.09687 -20.74768 -20.21096 -18.80189 -18.24140 -17.21006 -16.77458 -16.39330 -16.25993 -15.98408 -15.86175 -15.08081 -14.91782 -14.75490 -14.36883 -14.02201 -13.92962 -13.87367 -13.64619 -13.46459 -13.41837 -13.18687 -13.03384 -12.70407 -12.60381 -12.37666 -11.71111 -11.52800 -11.47406 -11.36128 -11.12142 -11.02674 -10.89845 -10.76618 -10.39013 -10.30602 -10.21103 -10.03254 -9.79660 -9.77698 -9.47960 -9.18746 -8.69151 -8.50379 -6.63807 -5.80968 -3.30256 2.35457 2.81320 3.11559 3.35051 3.40041 3.43054 3.44534 3.75857 4.11272 4.30572 4.46270 4.51723 4.84778 5.03126 5.09454 5.14730 5.20724 5.28917 5.29652 5.33618 5.42481 5.44138 5.47688 5.50925 5.56366 5.58332 5.74224 5.95470 6.09537 6.14467 6.29265 6.35538 6.48227 6.61016 6.64429 6.73954 6.84806 6.98220 7.17224 7.37387 7.67520 7.74676 7.78070 8.41119 8.45205 9.19560 9.80698 10.38881 11.26692 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.004470 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.510502 B = 6262.991604 C = 8329.643655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.067 3.933 4 C -0.131 4.131 5 C 0.195 3.805 6 N -0.704 5.704 7 C 0.544 3.456 8 O -0.516 6.516 9 C -0.193 4.193 10 H 0.148 0.852 11 C -0.152 4.152 12 C 0.230 3.770 13 F -0.158 7.158 14 F -0.138 7.138 15 C -0.151 4.151 16 C 0.180 3.820 17 N -0.590 5.590 18 C -0.257 4.257 19 H 0.064 0.936 20 C 0.007 3.993 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.146 3.854 27 C -0.140 4.140 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.399 0.601 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.017 0.983 41 H 0.084 0.916 42 H 0.254 0.746 43 H 0.014 0.986 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.694 -6.055 -5.032 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.009 4.009 4 C -0.170 4.170 5 C 0.110 3.890 6 N -0.355 5.355 7 C 0.329 3.671 8 O -0.391 6.391 9 C -0.216 4.216 10 H 0.166 0.834 11 C -0.191 4.191 12 C 0.193 3.807 13 F -0.139 7.139 14 F -0.118 7.118 15 C -0.191 4.191 16 C 0.054 3.946 17 N -0.312 5.312 18 C -0.386 4.386 19 H 0.081 0.919 20 C -0.192 4.192 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.019 3.981 27 C -0.180 4.180 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.234 0.766 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.035 0.965 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.031 0.969 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.970 -6.947 -5.162 18.164 hybrid contribution 0.447 1.169 0.381 1.308 sum -15.523 -5.777 -4.781 17.239 Atomic orbital electron populations 1.22688 0.81690 1.02365 0.99663 1.87901 1.19136 1.28721 1.95357 1.22580 0.94714 0.83989 0.99641 1.22022 0.92369 0.98173 1.04393 1.20242 0.95209 0.90478 0.83036 1.45981 1.56981 1.27155 1.05393 1.19024 0.79191 0.85384 0.83537 1.90730 1.41692 1.20020 1.86688 1.23709 1.03300 1.02851 0.91713 0.83390 1.24272 0.90624 1.04671 0.99489 1.19439 0.96570 0.79242 0.85455 1.93046 1.93167 1.72188 1.55451 1.93130 1.83774 1.38686 1.96186 1.22587 0.92474 1.01974 1.02058 1.20672 0.99365 0.84932 0.89604 1.44010 0.99080 1.50904 1.37253 1.19182 0.98193 1.29673 0.91599 0.91869 1.25175 0.99946 0.98655 0.95395 1.69988 1.24326 1.50046 1.10131 0.86229 0.81978 0.78265 0.80307 1.20232 1.21541 1.21677 1.20867 0.86574 0.92261 0.98371 1.22414 0.99257 0.99238 0.97080 0.89956 0.94302 0.94435 0.93731 0.93473 0.90806 0.88788 0.76590 0.85621 0.85197 0.91834 0.91109 0.96478 0.89824 0.93630 0.96858 0.92547 0.92521 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.33 10.70 -35.23 -0.38 -5.71 16 3 C 0.07 0.86 5.40 37.15 0.20 1.06 16 4 C -0.13 -1.96 4.38 -26.73 -0.12 -2.08 16 5 C 0.20 3.07 0.35 -131.77 -0.05 3.02 16 6 N -0.70 -9.93 3.13 -47.57 -0.15 -10.08 16 7 C 0.54 8.20 7.01 -10.99 -0.08 8.12 16 8 O -0.52 -9.49 11.41 5.55 0.06 -9.42 16 9 C -0.19 -2.29 6.17 -91.78 -0.57 -2.86 16 10 H 0.15 1.50 8.14 -51.93 -0.42 1.08 16 11 C -0.15 -1.35 10.21 -26.69 -0.27 -1.62 16 12 C 0.23 2.99 5.19 -26.70 -0.14 2.85 16 13 F -0.16 -2.10 17.60 2.25 0.04 -2.06 16 14 F -0.14 -2.22 15.71 2.25 0.04 -2.18 16 15 C -0.15 -2.95 4.66 -26.61 -0.12 -3.07 16 16 C 0.18 4.20 4.99 -3.71 -0.02 4.19 16 17 N -0.59 -13.90 2.98 -172.32 -0.51 -14.42 16 18 C -0.26 -6.80 9.57 -15.06 -0.14 -6.95 16 19 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 20 C 0.01 0.20 5.02 -17.43 -0.09 0.12 16 21 N -0.90 -25.81 11.16 55.49 0.62 -25.19 16 22 Si 0.90 21.41 29.57 -169.99 -5.03 16.38 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.15 2.72 6.24 -3.71 -0.02 2.69 16 27 C -0.14 -2.12 4.69 -26.61 -0.12 -2.25 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.04 0.54 7.36 -51.93 -0.38 0.16 16 32 H 0.05 0.55 6.73 -51.93 -0.35 0.20 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.63 6.11 -51.93 -0.32 1.31 16 35 H 0.40 4.84 7.29 -40.82 -0.30 4.54 16 36 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.46 6.35 -51.93 -0.33 1.13 16 40 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 41 H 0.08 2.27 6.20 -51.93 -0.32 1.95 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.01 0.24 6.95 -51.93 -0.36 -0.12 16 44 H 0.06 1.04 7.94 -51.93 -0.41 0.63 16 45 H 0.06 0.70 6.54 -51.93 -0.34 0.36 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -31.95 367.13 -7.07 -39.01 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.86 Total: 3.49 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -0.43 Total: 4.64 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.04 Total: -49.69 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.31 Total: -15.13 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.08 Total: -4.25 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.95 -7.07 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151108358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.538 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds