Wall clock time and date at job start Tue Mar 31 2020 18:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47423 * 2 1 4 4 C 1.53006 * 109.47184 * 119.99582 * 2 1 3 5 5 C 1.52999 * 109.46997 * 185.00136 * 4 2 1 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46691 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99597 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00321 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99825 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00262 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99923 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47174 * 89.99720 * 13 11 9 15 15 H 1.48504 * 109.46913 * 209.99970 * 13 11 9 16 16 H 1.48501 * 109.47062 * 329.99769 * 13 11 9 17 17 N 1.46500 * 109.47548 * 239.99557 * 2 1 3 18 18 C 1.34778 * 119.99992 * 84.99863 * 17 2 1 19 19 O 1.21626 * 119.99789 * 0.02562 * 18 17 2 20 20 C 1.47310 * 120.00170 * 180.02562 * 18 17 2 21 21 C 1.39003 * 120.90359 * 359.71718 * 20 18 17 22 22 C 1.39722 * 119.28941 * 179.72888 * 21 20 18 23 23 C 1.35254 * 121.08043 * 0.55679 * 22 21 20 24 24 N 1.35720 * 121.57404 * 359.73033 * 23 22 21 25 25 N 1.40206 * 134.09064 * 179.97438 * 24 23 22 26 26 N 1.29017 * 106.96273 * 180.02562 * 25 24 23 27 27 N 1.28599 * 110.78635 * 0.02562 * 26 25 24 28 28 C 1.32050 * 110.21367 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46911 * 60.00306 * 1 2 3 30 30 H 1.08992 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46828 * 300.00423 * 1 2 3 32 32 H 1.09000 * 109.46866 * 64.99924 * 4 2 1 33 33 H 1.09001 * 109.46611 * 305.00041 * 4 2 1 34 34 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 35 35 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 36 36 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 37 37 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 38 38 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 39 39 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 40 40 H 0.96999 * 120.00076 * 0.02562 * 8 7 6 41 41 H 0.97000 * 119.99891 * 179.97438 * 12 11 9 42 42 H 0.97001 * 120.00257 * 265.00388 * 17 2 1 43 43 H 1.07995 * 120.35564 * 359.97438 * 21 20 18 44 44 H 1.08001 * 119.46118 * 180.29316 * 22 21 20 45 45 H 1.08003 * 119.21819 * 179.71412 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3338 2.5635 7 6 5.5996 -1.2264 2.6275 8 7 6.0878 -1.9159 3.8245 9 6 7.4299 -1.9529 4.0937 10 1 8.1285 -1.4734 3.4240 11 6 7.8926 -2.6066 5.2275 12 7 9.1826 -2.6418 5.4866 13 14 6.6844 -3.4365 6.3855 14 1 6.4787 -4.8444 5.9605 15 1 7.2263 -3.4107 7.7679 16 1 5.3875 -2.7139 6.3488 17 7 2.0184 -0.6907 -1.1961 18 6 2.1472 -0.0184 -2.3571 19 8 1.8583 1.1618 -2.4117 20 6 2.6378 -0.7130 -3.5600 21 6 2.9789 -2.0599 -3.5174 22 6 3.4352 -2.6865 -4.6799 23 6 3.5601 -2.0014 -5.8394 24 7 3.2441 -0.6843 -5.9241 25 7 3.2706 0.2607 -6.9596 26 7 2.8556 1.3762 -6.4619 27 7 2.5675 1.2409 -5.2159 28 6 2.7857 -0.0028 -4.8296 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7516 -1.7714 1.2057 33 1 1.6054 -0.2615 2.1370 34 1 3.8532 0.4371 1.3574 35 1 3.9995 -1.0728 0.4261 36 1 3.6400 -0.8739 3.4508 37 1 3.7863 -2.3841 2.5203 38 1 6.0340 -1.6866 1.7401 39 1 5.8883 -0.1762 2.6705 40 1 5.4604 -2.3468 4.4258 41 1 9.5058 -3.0983 6.2791 42 1 2.2491 -1.6319 -1.1525 43 1 2.8883 -2.6170 -2.5967 44 1 3.6964 -3.7341 -4.6511 45 1 3.9202 -2.5147 -6.7188 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170998553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:54 Heat of formation + Delta-G solvation = 118.258770 kcal Electronic energy + Delta-G solvation = -27189.861424 eV Core-core repulsion = 23245.858667 eV Total energy + Delta-G solvation = -3944.002757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.80955 -40.43191 -38.94756 -37.15774 -35.51220 -34.59559 -33.39179 -32.52816 -31.98750 -31.02445 -30.28637 -27.83340 -26.07210 -24.84785 -24.42419 -23.80554 -22.11090 -21.37771 -21.02907 -20.88570 -19.34109 -18.17974 -17.99329 -17.50847 -17.33830 -16.53879 -16.32226 -15.36774 -15.26471 -14.81126 -14.63974 -14.29525 -14.21536 -13.67591 -13.64354 -13.53152 -13.37412 -13.11353 -12.93392 -12.88011 -12.77141 -12.50669 -11.99583 -11.93431 -11.70852 -11.53275 -11.39720 -11.23631 -10.93182 -10.90495 -10.80295 -10.48726 -10.41797 -10.33743 -10.13790 -9.61599 -9.48065 -9.18467 -8.91594 -7.25024 -5.78870 -3.14388 -0.62640 -0.05529 1.10157 1.67699 1.98027 2.53427 2.87797 3.00877 3.34397 3.36761 3.39951 3.42542 3.71759 3.86343 4.14380 4.40814 4.45408 4.56674 4.70948 4.73487 4.82229 4.85609 4.91909 5.01545 5.11999 5.23412 5.24799 5.27582 5.42577 5.48812 5.51550 5.59846 5.71543 5.74661 5.80794 5.96079 6.00332 6.04014 6.12278 6.20015 6.30191 6.73026 6.76927 7.02633 7.77018 7.93154 7.97951 8.40387 9.19746 9.92102 10.12169 11.39645 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.002147 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.490938 B =13035.738280 C =14088.483486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.715 5.715 18 C 0.562 3.438 19 O -0.498 6.498 20 C -0.100 4.100 21 C -0.016 4.016 22 C -0.144 4.144 23 C 0.131 3.869 24 N -0.310 5.310 25 N -0.105 5.105 26 N -0.008 5.008 27 N -0.290 5.290 28 C 0.272 3.728 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.398 0.602 43 H 0.165 0.835 44 H 0.177 0.823 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.362 -3.788 -21.464 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.112 0.888 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.368 5.368 18 C 0.346 3.654 19 O -0.372 6.372 20 C -0.109 4.109 21 C -0.042 4.042 22 C -0.168 4.168 23 C 0.004 3.996 24 N -0.090 5.090 25 N -0.088 5.088 26 N -0.001 5.001 27 N -0.146 5.146 28 C 0.014 3.986 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.234 0.766 43 H 0.182 0.818 44 H 0.195 0.805 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -19.372 -1.559 -22.616 29.820 hybrid contribution -0.379 -2.055 1.299 2.460 sum -19.751 -3.614 -21.317 29.284 Atomic orbital electron populations 1.22187 0.95055 1.02177 1.02840 1.21120 0.93932 0.97940 0.83103 0.88809 1.21958 0.96848 1.00942 0.96774 1.21532 0.93935 1.01449 0.98456 1.21781 0.97303 1.00236 0.97435 1.20629 0.90749 0.95758 0.89972 1.42739 1.05241 1.66389 1.26006 1.19081 0.82253 1.29313 1.06796 0.89295 1.24703 0.95646 1.00788 0.98251 1.69709 1.11731 1.48280 1.28577 0.86511 0.80929 0.79728 0.81135 1.21106 1.21707 1.20351 1.45934 1.67597 1.13956 1.09358 1.17391 0.78985 0.86728 0.82309 1.90936 1.47705 1.14442 1.84128 1.20307 1.06771 0.93212 0.90605 1.22056 0.90218 0.92057 0.99825 1.21055 1.02681 1.02509 0.90527 1.21847 0.96323 0.79800 1.01632 1.49036 1.40282 1.10336 1.09384 1.82842 1.26428 0.92618 1.06874 1.78078 1.04856 1.14842 1.02281 1.75312 1.23174 1.12520 1.03636 1.23610 0.95979 0.89332 0.89717 0.92045 0.92425 0.91271 0.91264 0.89942 0.91618 0.92008 0.92037 0.92164 0.95798 0.95728 0.80734 0.93059 0.76629 0.81804 0.80544 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 2 C 0.14 1.10 2.57 -67.93 -0.17 0.93 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.13 -0.93 4.75 -26.73 -0.13 -1.06 16 5 C -0.12 -1.15 5.10 -26.73 -0.14 -1.28 16 6 C -0.13 -1.73 5.33 -26.73 -0.14 -1.87 16 7 C 0.16 2.89 6.26 -4.04 -0.03 2.87 16 8 N -0.76 -17.88 5.41 -59.91 -0.32 -18.20 16 9 C -0.24 -6.95 10.47 -15.06 -0.16 -7.10 16 10 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 11 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 12 N -0.93 -29.35 13.97 55.49 0.78 -28.57 16 13 Si 0.89 21.83 27.74 -169.99 -4.71 17.12 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 17 N -0.72 -4.86 4.48 -54.91 -0.25 -5.11 16 18 C 0.56 5.56 7.74 -12.57 -0.10 5.46 16 19 O -0.50 -7.22 15.94 5.25 0.08 -7.14 16 20 C -0.10 -0.80 6.06 -102.72 -0.62 -1.42 16 21 C -0.02 -0.05 9.63 -38.74 -0.37 -0.42 16 22 C -0.14 -0.21 9.92 -40.09 -0.40 -0.60 16 23 C 0.13 0.48 11.15 -16.89 -0.19 0.29 16 24 N -0.31 -2.79 3.94 -10.99 -0.04 -2.83 16 25 N -0.10 -1.24 13.99 60.35 0.84 -0.39 16 26 N -0.01 -0.11 13.36 60.35 0.81 0.70 16 27 N -0.29 -4.24 11.75 32.20 0.38 -3.86 16 28 C 0.27 3.05 7.85 -154.51 -1.21 1.84 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.36 8.19 5.53 -40.82 -0.23 7.97 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.40 1.44 6.71 -40.82 -0.27 1.17 16 43 H 0.16 -0.06 6.49 -52.49 -0.34 -0.40 16 44 H 0.18 -0.43 8.06 -52.49 -0.42 -0.85 16 45 H 0.19 0.03 8.06 -52.48 -0.42 -0.39 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -39.54 381.09 -6.40 -45.94 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.30 Total: -0.15 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -3.40 Total: -3.23 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 2.19 Total: -58.27 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.08 Total: -7.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.54 -6.40 -45.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170998553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.195 kcal (2) G-P(sol) polarization free energy of solvation -39.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds