Wall clock time and date at job start Tue Mar 31 2020 18:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47423 * 2 1 4 4 C 1.53006 * 109.47184 * 119.99582 * 2 1 3 5 5 C 1.52999 * 109.46997 * 185.00136 * 4 2 1 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46691 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99597 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00321 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99825 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00262 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99923 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47174 * 89.99720 * 13 11 9 15 15 H 1.48504 * 109.46913 * 209.99970 * 13 11 9 16 16 H 1.48501 * 109.47062 * 329.99769 * 13 11 9 17 17 N 1.46500 * 109.47548 * 239.99557 * 2 1 3 18 18 C 1.34778 * 119.99992 * 84.99863 * 17 2 1 19 19 O 1.21626 * 119.99789 * 0.02562 * 18 17 2 20 20 C 1.47310 * 120.00170 * 180.02562 * 18 17 2 21 21 C 1.39003 * 120.90359 * 359.71718 * 20 18 17 22 22 C 1.39722 * 119.28941 * 179.72888 * 21 20 18 23 23 C 1.35254 * 121.08043 * 0.55679 * 22 21 20 24 24 N 1.35720 * 121.57404 * 359.73033 * 23 22 21 25 25 N 1.40206 * 134.09064 * 179.97438 * 24 23 22 26 26 N 1.29017 * 106.96273 * 180.02562 * 25 24 23 27 27 N 1.28599 * 110.78635 * 0.02562 * 26 25 24 28 28 C 1.32050 * 110.21367 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46911 * 60.00306 * 1 2 3 30 30 H 1.08992 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46828 * 300.00423 * 1 2 3 32 32 H 1.09000 * 109.46866 * 64.99924 * 4 2 1 33 33 H 1.09001 * 109.46611 * 305.00041 * 4 2 1 34 34 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 35 35 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 36 36 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 37 37 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 38 38 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 39 39 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 40 40 H 0.96999 * 120.00076 * 0.02562 * 8 7 6 41 41 H 0.97000 * 119.99891 * 179.97438 * 12 11 9 42 42 H 0.97001 * 120.00257 * 265.00388 * 17 2 1 43 43 H 1.07995 * 120.35564 * 359.97438 * 21 20 18 44 44 H 1.08001 * 119.46118 * 180.29316 * 22 21 20 45 45 H 1.08003 * 119.21819 * 179.71412 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3338 2.5635 7 6 5.5996 -1.2264 2.6275 8 7 6.0878 -1.9159 3.8245 9 6 7.4299 -1.9529 4.0937 10 1 8.1285 -1.4734 3.4240 11 6 7.8926 -2.6066 5.2275 12 7 9.1826 -2.6418 5.4866 13 14 6.6844 -3.4365 6.3855 14 1 6.4787 -4.8444 5.9605 15 1 7.2263 -3.4107 7.7679 16 1 5.3875 -2.7139 6.3488 17 7 2.0184 -0.6907 -1.1961 18 6 2.1472 -0.0184 -2.3571 19 8 1.8583 1.1618 -2.4117 20 6 2.6378 -0.7130 -3.5600 21 6 2.9789 -2.0599 -3.5174 22 6 3.4352 -2.6865 -4.6799 23 6 3.5601 -2.0014 -5.8394 24 7 3.2441 -0.6843 -5.9241 25 7 3.2706 0.2607 -6.9596 26 7 2.8556 1.3762 -6.4619 27 7 2.5675 1.2409 -5.2159 28 6 2.7857 -0.0028 -4.8296 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7516 -1.7714 1.2057 33 1 1.6054 -0.2615 2.1370 34 1 3.8532 0.4371 1.3574 35 1 3.9995 -1.0728 0.4261 36 1 3.6400 -0.8739 3.4508 37 1 3.7863 -2.3841 2.5203 38 1 6.0340 -1.6866 1.7401 39 1 5.8883 -0.1762 2.6705 40 1 5.4604 -2.3468 4.4258 41 1 9.5058 -3.0983 6.2791 42 1 2.2491 -1.6319 -1.1525 43 1 2.8883 -2.6170 -2.5967 44 1 3.6964 -3.7341 -4.6511 45 1 3.9202 -2.5147 -6.7188 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170998553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:53 Heat of formation + Delta-G solvation = 87.801648 kcal Electronic energy + Delta-G solvation = -27191.182144 eV Core-core repulsion = 23245.858667 eV Total energy + Delta-G solvation = -3945.323477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.50952 -41.10122 -39.48641 -38.05517 -36.92473 -35.24915 -34.71781 -33.34889 -33.06151 -32.26707 -31.00851 -29.01056 -26.62609 -25.74554 -25.38972 -24.68777 -23.44864 -22.30421 -22.00740 -21.65655 -19.95329 -19.59720 -18.69483 -18.51202 -18.05827 -17.17497 -16.68171 -16.60618 -16.24362 -16.02192 -15.82910 -15.43971 -14.86883 -14.86008 -14.62457 -14.30648 -14.16612 -14.13557 -13.94445 -13.69048 -13.54222 -13.27474 -13.05166 -12.92439 -12.88977 -12.58867 -12.40602 -12.26197 -12.18845 -12.01536 -11.86048 -11.74175 -11.46535 -11.39085 -11.32518 -11.10263 -10.94548 -10.17308 -9.72614 -9.28687 -8.02180 -5.36343 -1.07684 -0.60344 0.57097 0.93787 1.39630 1.44676 1.46086 1.52397 1.95422 2.28520 2.47545 2.50389 2.84387 3.28911 3.37953 3.52878 3.58581 3.72262 3.94854 3.99620 4.06947 4.13838 4.19277 4.34839 4.39759 4.44171 4.55820 4.63396 4.69802 4.72687 4.80860 4.92885 4.95420 4.97207 5.03570 5.08889 5.15711 5.31656 5.34757 5.37414 5.45465 5.56597 5.60126 5.76052 6.22216 6.49616 7.09383 7.14583 7.18088 7.85862 8.06052 9.19509 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.002147 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.490938 B =13035.738280 C =14088.483486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.063 0.937 4 C -0.114 4.114 5 C -0.110 4.110 6 C -0.116 4.116 7 C 0.148 3.852 8 N -0.760 5.760 9 C -0.240 4.240 10 H 0.050 0.950 11 C -0.070 4.070 12 N -0.987 5.987 13 Si 0.963 3.037 14 H -0.272 1.272 15 H -0.298 1.298 16 H -0.249 1.249 17 N -0.697 5.697 18 C 0.560 3.440 19 O -0.561 6.561 20 C -0.138 4.138 21 C 0.024 3.976 22 C -0.115 4.115 23 C 0.117 3.883 24 N -0.307 5.307 25 N -0.124 5.124 26 N -0.041 5.041 27 N -0.346 5.346 28 C 0.252 3.748 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.009 0.991 40 H 0.368 0.632 41 H 0.258 0.742 42 H 0.418 0.582 43 H 0.211 0.789 44 H 0.236 0.764 45 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.329 -8.560 -20.665 30.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.152 4.152 5 C -0.149 4.149 6 C -0.153 4.153 7 C 0.022 3.978 8 N -0.406 5.406 9 C -0.371 4.371 10 H 0.068 0.932 11 C -0.261 4.261 12 N -0.637 5.637 13 Si 0.790 3.210 14 H -0.197 1.197 15 H -0.225 1.225 16 H -0.173 1.173 17 N -0.351 5.351 18 C 0.346 3.654 19 O -0.439 6.439 20 C -0.148 4.148 21 C -0.001 4.001 22 C -0.138 4.138 23 C -0.009 4.009 24 N -0.087 5.087 25 N -0.107 5.107 26 N -0.033 5.033 27 N -0.204 5.204 28 C -0.005 4.005 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.043 0.957 39 H 0.027 0.973 40 H 0.201 0.799 41 H 0.067 0.933 42 H 0.257 0.743 43 H 0.227 0.773 44 H 0.252 0.748 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -21.374 -6.371 -21.844 31.218 hybrid contribution 0.364 -0.748 1.018 1.314 sum -21.010 -7.119 -20.826 30.428 Atomic orbital electron populations 1.22126 0.94300 1.03251 1.01991 1.21018 0.94452 0.96788 0.83705 0.91863 1.21853 0.94445 1.02561 0.96331 1.21473 0.95973 1.00070 0.97338 1.21666 0.92838 1.01865 0.98977 1.20875 0.94719 0.94155 0.88016 1.42757 1.03379 1.66823 1.27682 1.19057 0.84103 1.28022 1.05936 0.93162 1.25649 0.97747 1.02208 1.00508 1.69912 1.14390 1.49937 1.29456 0.85289 0.79164 0.79022 0.77569 1.19747 1.22489 1.17302 1.45754 1.66493 1.14655 1.08161 1.17749 0.78083 0.86169 0.83416 1.90908 1.50646 1.17212 1.85132 1.20277 1.10657 0.95093 0.88784 1.22754 0.85541 0.89615 1.02216 1.21847 0.99129 1.04415 0.88366 1.22971 0.95746 0.77770 1.04412 1.49139 1.39985 1.11604 1.07987 1.82618 1.27130 0.92901 1.08048 1.77984 1.06380 1.16236 1.02736 1.75122 1.25618 1.15528 1.04177 1.23925 0.96424 0.88890 0.91295 0.94491 0.90258 0.90629 0.88400 0.89488 0.93375 0.90870 0.92049 0.90274 0.95656 0.97268 0.79870 0.93303 0.74327 0.77269 0.74783 0.76031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.48 71.98 0.68 -1.29 16 2 C 0.14 1.99 2.57 44.99 0.12 2.10 16 3 H 0.06 1.29 7.58 -2.38 -0.02 1.28 16 4 C -0.11 -1.23 4.75 30.60 0.15 -1.09 16 5 C -0.11 -1.86 5.10 30.60 0.16 -1.71 16 6 C -0.12 -2.66 5.33 30.60 0.16 -2.50 16 7 C 0.15 5.25 6.26 86.38 0.54 5.79 16 8 N -0.76 -34.51 5.41 -343.45 -1.86 -36.36 16 9 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 10 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 11 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 12 N -0.99 -63.06 13.97 21.65 0.30 -62.76 16 13 Si 0.96 44.01 27.74 68.60 1.90 45.91 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 16 H -0.25 -10.07 6.52 99.48 0.65 -9.42 16 17 N -0.70 -7.81 4.48 -445.89 -2.00 -9.81 16 18 C 0.56 11.03 7.74 86.63 0.67 11.70 16 19 O -0.56 -17.69 15.94 -4.11 -0.07 -17.75 16 20 C -0.14 -2.04 6.06 -18.63 -0.11 -2.16 16 21 C 0.02 0.02 9.63 22.81 0.22 0.24 16 22 C -0.12 0.39 9.92 21.94 0.22 0.60 16 23 C 0.12 0.42 11.15 83.40 0.93 1.35 16 24 N -0.31 -5.41 3.94 -188.68 -0.74 -6.15 16 25 N -0.12 -3.11 13.99 37.02 0.52 -2.59 16 26 N -0.04 -1.27 13.36 37.02 0.49 -0.78 16 27 N -0.35 -11.25 11.75 -52.05 -0.61 -11.86 16 28 C 0.25 5.88 7.85 135.75 1.07 6.94 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.07 7.75 -2.39 -0.02 1.05 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.37 15.47 5.53 -92.71 -0.51 14.96 16 41 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.42 0.97 6.71 -92.71 -0.62 0.35 16 43 H 0.21 -1.75 6.49 -2.91 -0.02 -1.77 16 44 H 0.24 -3.31 8.06 -2.91 -0.02 -3.33 16 45 H 0.22 -0.97 8.06 -2.91 -0.02 -0.99 16 Total: -1.00 -97.97 381.09 3.92 -94.05 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -0.16 Total: 4.55 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 6.14 Total: 3.55 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -3.90 Total: -130.32 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.07 Total: -17.75 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.91 kcal Total: -97.97 3.92 -94.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170998553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.855 kcal (2) G-P(sol) polarization free energy of solvation -97.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds