Wall clock time and date at job start Tue Mar 31 2020 18:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47202 * 2 1 4 4 C 1.52996 * 109.47153 * 240.00401 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99932 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47105 * 59.99692 * 13 11 9 15 15 H 1.48496 * 109.47068 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46941 * 299.99925 * 13 11 9 17 17 N 1.46501 * 109.47432 * 119.99880 * 2 1 3 18 18 C 1.34774 * 119.99941 * 275.00459 * 17 2 1 19 19 O 1.21519 * 120.00235 * 359.97438 * 18 17 2 20 20 C 1.48122 * 119.99687 * 179.97438 * 18 17 2 21 21 C 1.39823 * 119.37446 * 179.97438 * 20 18 17 22 22 C 1.36959 * 119.60889 * 179.97438 * 21 20 18 23 23 C 1.39818 * 118.25227 * 0.02562 * 22 21 20 24 24 N 1.34658 * 135.00378 * 180.02562 * 23 22 21 25 25 N 1.28674 * 109.15698 * 179.97438 * 24 23 22 26 26 N 1.28765 * 111.84442 * 0.02562 * 25 24 23 27 27 H 0.97003 * 125.85164 * 180.02562 * 26 25 24 28 28 C 1.37240 * 108.28496 * 359.97438 * 26 25 24 29 29 N 1.31962 * 134.70656 * 180.35118 * 28 26 25 30 30 H 1.09002 * 109.47186 * 299.99730 * 1 2 3 31 31 H 1.08997 * 109.47659 * 59.99575 * 1 2 3 32 32 H 1.09007 * 109.47202 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47452 * 54.99933 * 4 2 1 34 34 H 1.09001 * 109.46997 * 294.99506 * 4 2 1 35 35 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 36 36 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 37 37 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 38 38 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 39 39 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 40 40 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 41 41 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 42 42 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 43 43 H 0.96999 * 119.99400 * 95.00175 * 17 2 1 44 44 H 1.08000 * 120.19056 * 0.02562 * 21 20 18 45 45 H 1.08002 * 120.87416 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 6 5.5996 -1.2275 -2.6268 8 7 6.0881 -1.9190 -3.8223 9 6 7.4301 -1.9556 -4.0920 10 1 8.1286 -1.4741 -3.4234 11 6 7.8930 -2.6103 -5.2250 12 7 7.0418 -3.1966 -6.0401 13 14 9.7238 -2.6608 -5.5924 14 1 10.4346 -3.3320 -4.4747 15 1 9.9556 -3.4155 -6.8501 16 1 10.2365 -1.2754 -5.7442 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8583 1.1609 2.4116 20 6 2.6403 -0.7166 3.5666 21 6 2.7693 -0.0063 4.7641 22 6 3.2244 -0.6475 5.8855 23 6 3.5468 -2.0044 5.7871 24 7 4.0072 -2.9381 6.6413 25 7 4.1318 -4.0565 6.0172 26 7 3.7863 -3.9564 4.7808 27 1 3.8001 -4.6730 4.1273 28 6 3.3941 -2.6622 4.5468 29 7 2.9470 -2.0036 3.4943 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6053 -0.2616 -2.1370 34 1 1.7516 -1.7714 -1.2056 35 1 3.9994 -1.0727 -0.4260 36 1 3.8531 0.4371 -1.3573 37 1 3.7865 -2.3852 -2.5186 38 1 3.6402 -0.8757 -3.4505 39 1 5.8884 -0.1773 -2.6706 40 1 6.0339 -1.6869 -1.7388 41 1 5.4608 -2.3511 -4.4230 42 1 7.3651 -3.6545 -6.8317 43 1 2.2490 -1.6317 1.1525 44 1 2.5107 1.0415 4.8046 45 1 3.3315 -0.1188 6.8212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171152085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:36 Heat of formation + Delta-G solvation = 85.738577 kcal Electronic energy + Delta-G solvation = -27025.180812 eV Core-core repulsion = 23079.767874 eV Total energy + Delta-G solvation = -3945.412939 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.92513 -40.71749 -39.01576 -37.05532 -35.33811 -34.85019 -33.37175 -32.48778 -31.90907 -31.07409 -30.20675 -27.48208 -26.33446 -24.60575 -24.16887 -23.29497 -22.47279 -21.55843 -20.84823 -20.66997 -19.44951 -19.02329 -18.37161 -17.15043 -17.02102 -16.57904 -15.93172 -15.48618 -15.11411 -14.90415 -14.67298 -14.08383 -14.06191 -13.83075 -13.71933 -13.40958 -13.17112 -12.98370 -12.91092 -12.88966 -12.42334 -12.34000 -12.22820 -11.80277 -11.51654 -11.31418 -11.03887 -10.83053 -10.75674 -10.73464 -10.45928 -10.32005 -10.11684 -10.01970 -9.84524 -9.68709 -9.65258 -9.33696 -8.86070 -6.91110 -5.76050 -3.04510 -0.46824 0.39011 1.53164 1.56404 2.28694 2.64673 3.14677 3.17233 3.44008 3.47992 3.49367 3.62948 3.78516 4.18235 4.21178 4.47937 4.62985 4.77464 4.81689 4.84884 4.93950 5.17138 5.21275 5.28386 5.35709 5.40768 5.52992 5.57880 5.65504 5.67235 5.74265 5.84200 5.91361 6.00136 6.06348 6.14317 6.28834 6.30593 6.37268 6.45132 6.72845 6.88579 6.92466 7.17955 7.55613 7.69661 7.77065 8.43477 9.54034 10.13237 10.47835 11.47023 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.002314 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.787264 B =12094.874142 C =14091.984354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.697 5.697 18 C 0.573 3.427 19 O -0.523 6.523 20 C 0.150 3.850 21 C -0.122 4.122 22 C -0.001 4.001 23 C -0.023 4.023 24 N -0.239 5.239 25 N 0.014 4.986 26 N -0.400 5.400 27 H 0.461 0.539 28 C 0.217 3.783 29 N -0.443 5.443 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.015 0.985 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.411 0.589 44 H 0.168 0.832 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.844 3.893 23.583 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.111 0.889 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.212 1.212 17 N -0.349 5.349 18 C 0.356 3.644 19 O -0.398 6.398 20 C -0.004 4.004 21 C -0.145 4.145 22 C -0.031 4.031 23 C -0.150 4.150 24 N -0.116 5.116 25 N 0.031 4.969 26 N -0.131 5.131 27 H 0.310 0.690 28 C -0.028 4.028 29 N -0.159 5.159 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.248 0.752 44 H 0.185 0.815 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.428 3.365 23.967 28.702 hybrid contribution 0.763 -0.298 -1.011 1.301 sum -14.665 3.066 22.956 27.413 Atomic orbital electron populations 1.22181 0.94999 1.02286 1.02707 1.21182 0.94008 0.97854 0.83529 0.88881 1.21947 0.96939 1.01040 0.96575 1.21535 0.93915 1.01164 0.98723 1.21722 0.97244 1.00265 0.97088 1.20643 0.91018 0.95316 0.90528 1.42380 1.05319 1.64914 1.25266 1.19208 0.83934 1.28433 1.05493 0.91316 1.24746 0.97735 1.00959 0.97691 1.69652 1.32870 1.40707 1.15185 0.86255 0.85101 0.77503 0.77276 1.21294 1.21641 1.21242 1.46001 1.65038 1.14848 1.08993 1.17647 0.78257 0.86031 0.82431 1.90826 1.50081 1.14579 1.84348 1.21262 0.96396 0.87755 0.95029 1.21751 0.98935 1.02842 0.91005 1.20550 0.93057 0.89499 1.00041 1.20710 1.05463 0.96958 0.91879 1.75455 1.16657 0.94947 1.24514 1.78152 1.11076 1.18773 0.88925 1.44741 1.48781 1.09107 1.10508 0.69008 1.19762 1.03037 0.87351 0.92653 1.66251 1.11753 1.08552 1.29389 0.92140 0.91213 0.92372 0.89926 0.91232 0.92139 0.91881 0.92146 0.91990 0.96564 0.96735 0.78347 0.93481 0.75244 0.81465 0.82112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.15 0.35 -0.92 16 2 C 0.14 1.22 2.57 -67.94 -0.17 1.04 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 4 C -0.13 -1.16 4.75 -26.73 -0.13 -1.29 16 5 C -0.12 -1.37 5.10 -26.73 -0.14 -1.51 16 6 C -0.13 -1.95 5.33 -26.73 -0.14 -2.09 16 7 C 0.15 3.13 6.26 -4.05 -0.03 3.10 16 8 N -0.73 -19.16 5.60 -59.91 -0.34 -19.50 16 9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 10 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 12 N -0.94 -28.67 13.06 55.49 0.72 -27.95 16 13 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 N -0.70 -6.22 4.52 -54.67 -0.25 -6.47 16 18 C 0.57 5.78 7.77 -12.20 -0.09 5.68 16 19 O -0.52 -6.44 15.95 5.35 0.09 -6.35 16 20 C 0.15 1.35 6.74 -82.93 -0.56 0.79 16 21 C -0.12 -0.86 9.55 -39.45 -0.38 -1.24 16 22 C 0.00 0.00 10.16 -39.45 -0.40 -0.41 16 23 C -0.02 -0.21 7.38 -84.90 -0.63 -0.83 16 24 N -0.24 -2.46 12.43 32.12 0.40 -2.06 16 25 N 0.01 0.13 13.28 60.35 0.80 0.93 16 26 N -0.40 -2.95 7.06 31.13 0.22 -2.73 16 27 H 0.46 1.84 8.96 -190.26 -1.71 0.13 16 28 C 0.22 1.96 8.56 -156.29 -1.34 0.62 16 29 N -0.44 -4.02 9.54 -8.91 -0.08 -4.10 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.38 10.39 7.67 -40.82 -0.31 10.08 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.41 3.34 7.91 -40.82 -0.32 3.01 16 44 H 0.17 0.94 7.61 -52.49 -0.40 0.54 16 45 H 0.16 0.59 8.06 -52.49 -0.42 0.16 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -34.84 384.57 -9.29 -44.13 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.73 Total: 5.25 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.90 Total: -4.64 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 1.48 Total: -61.86 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: 0.09 Total: -6.35 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.84 -9.29 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171152085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.870 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds