Wall clock time and date at job start Tue Mar 31 2020 18:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47202 * 2 1 4 4 C 1.52996 * 109.47153 * 240.00401 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99932 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47105 * 59.99692 * 13 11 9 15 15 H 1.48496 * 109.47068 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46941 * 299.99925 * 13 11 9 17 17 N 1.46501 * 109.47432 * 119.99880 * 2 1 3 18 18 C 1.34774 * 119.99941 * 275.00459 * 17 2 1 19 19 O 1.21519 * 120.00235 * 359.97438 * 18 17 2 20 20 C 1.48122 * 119.99687 * 179.97438 * 18 17 2 21 21 C 1.39823 * 119.37446 * 179.97438 * 20 18 17 22 22 C 1.36959 * 119.60889 * 179.97438 * 21 20 18 23 23 C 1.39818 * 118.25227 * 0.02562 * 22 21 20 24 24 N 1.34658 * 135.00378 * 180.02562 * 23 22 21 25 25 N 1.28674 * 109.15698 * 179.97438 * 24 23 22 26 26 N 1.28765 * 111.84442 * 0.02562 * 25 24 23 27 27 H 0.97003 * 125.85164 * 180.02562 * 26 25 24 28 28 C 1.37240 * 108.28496 * 359.97438 * 26 25 24 29 29 N 1.31962 * 134.70656 * 180.35118 * 28 26 25 30 30 H 1.09002 * 109.47186 * 299.99730 * 1 2 3 31 31 H 1.08997 * 109.47659 * 59.99575 * 1 2 3 32 32 H 1.09007 * 109.47202 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47452 * 54.99933 * 4 2 1 34 34 H 1.09001 * 109.46997 * 294.99506 * 4 2 1 35 35 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 36 36 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 37 37 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 38 38 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 39 39 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 40 40 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 41 41 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 42 42 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 43 43 H 0.96999 * 119.99400 * 95.00175 * 17 2 1 44 44 H 1.08000 * 120.19056 * 0.02562 * 21 20 18 45 45 H 1.08002 * 120.87416 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 6 5.5996 -1.2275 -2.6268 8 7 6.0881 -1.9190 -3.8223 9 6 7.4301 -1.9556 -4.0920 10 1 8.1286 -1.4741 -3.4234 11 6 7.8930 -2.6103 -5.2250 12 7 7.0418 -3.1966 -6.0401 13 14 9.7238 -2.6608 -5.5924 14 1 10.4346 -3.3320 -4.4747 15 1 9.9556 -3.4155 -6.8501 16 1 10.2365 -1.2754 -5.7442 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8583 1.1609 2.4116 20 6 2.6403 -0.7166 3.5666 21 6 2.7693 -0.0063 4.7641 22 6 3.2244 -0.6475 5.8855 23 6 3.5468 -2.0044 5.7871 24 7 4.0072 -2.9381 6.6413 25 7 4.1318 -4.0565 6.0172 26 7 3.7863 -3.9564 4.7808 27 1 3.8001 -4.6730 4.1273 28 6 3.3941 -2.6622 4.5468 29 7 2.9470 -2.0036 3.4943 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6053 -0.2616 -2.1370 34 1 1.7516 -1.7714 -1.2056 35 1 3.9994 -1.0727 -0.4260 36 1 3.8531 0.4371 -1.3573 37 1 3.7865 -2.3852 -2.5186 38 1 3.6402 -0.8757 -3.4505 39 1 5.8884 -0.1773 -2.6706 40 1 6.0339 -1.6869 -1.7388 41 1 5.4608 -2.3511 -4.4230 42 1 7.3651 -3.6545 -6.8317 43 1 2.2490 -1.6317 1.1525 44 1 2.5107 1.0415 4.8046 45 1 3.3315 -0.1188 6.8212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171152085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:35 Heat of formation + Delta-G solvation = 61.014465 kcal Electronic energy + Delta-G solvation = -27026.252930 eV Core-core repulsion = 23079.767874 eV Total energy + Delta-G solvation = -3946.485057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.57118 -41.44052 -39.70510 -38.03502 -36.86194 -35.50820 -34.80418 -33.36063 -32.80424 -32.26714 -31.28701 -28.81954 -27.01759 -25.93673 -25.14168 -23.98714 -23.75363 -22.56123 -22.02605 -21.56510 -20.08028 -19.67386 -19.15856 -19.03923 -17.80612 -17.35904 -16.71715 -16.58001 -16.32138 -16.15354 -15.65716 -15.33807 -15.30370 -14.68226 -14.62426 -14.40664 -14.37770 -14.11421 -13.92377 -13.58845 -13.24281 -13.03915 -12.98578 -12.88307 -12.85169 -12.84675 -12.44949 -12.30079 -12.21279 -11.89355 -11.82127 -11.60629 -11.43068 -11.39988 -10.94848 -10.79627 -10.48202 -10.31357 -10.08453 -9.03399 -7.98276 -5.27671 -1.11461 -0.20731 0.84486 0.97114 1.45009 1.48354 1.54744 1.58385 1.95400 2.50479 2.53768 2.54318 3.00059 3.16344 3.34820 3.52320 3.61100 3.67850 4.03137 4.05937 4.13381 4.19877 4.22193 4.36154 4.42035 4.60235 4.65374 4.68573 4.72476 4.79445 4.87342 4.94507 4.99484 5.01966 5.10848 5.13667 5.27318 5.34838 5.40313 5.44087 5.48293 5.52468 5.56177 6.08050 6.24673 6.46416 6.88943 7.03373 7.30288 8.06981 8.30511 9.25169 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.002314 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.787264 B =12094.874142 C =14091.984354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 H 0.081 0.919 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.252 4.252 10 H 0.072 0.928 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.277 1.277 15 H -0.292 1.292 16 H -0.277 1.277 17 N -0.693 5.693 18 C 0.573 3.427 19 O -0.549 6.549 20 C 0.139 3.861 21 C -0.118 4.118 22 C 0.010 3.990 23 C -0.036 4.036 24 N -0.260 5.260 25 N 0.005 4.995 26 N -0.385 5.385 27 H 0.473 0.527 28 C 0.203 3.797 29 N -0.449 5.449 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.014 0.986 40 H 0.014 0.986 41 H 0.374 0.626 42 H 0.253 0.747 43 H 0.416 0.584 44 H 0.183 0.817 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.065 4.316 24.418 29.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.155 4.155 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.384 4.384 10 H 0.090 0.910 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.203 1.203 17 N -0.344 5.344 18 C 0.357 3.643 19 O -0.426 6.426 20 C -0.015 4.015 21 C -0.142 4.142 22 C -0.020 4.020 23 C -0.164 4.164 24 N -0.137 5.137 25 N 0.022 4.978 26 N -0.119 5.119 27 H 0.325 0.675 28 C -0.042 4.042 29 N -0.166 5.166 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.032 0.968 41 H 0.206 0.794 42 H 0.062 0.938 43 H 0.253 0.747 44 H 0.201 0.799 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.652 3.778 24.826 29.591 hybrid contribution 0.815 -0.414 -1.244 1.544 sum -14.838 3.364 23.582 28.064 Atomic orbital electron populations 1.22125 0.93863 1.02851 1.02752 1.21137 0.94805 0.97083 0.83249 0.90128 1.21858 0.94624 1.01937 0.97114 1.21434 0.95922 1.00350 0.96683 1.21599 0.93644 1.00881 0.98893 1.20852 0.94342 0.94274 0.88326 1.42621 1.04508 1.65338 1.26696 1.19614 0.85359 1.27890 1.05523 0.90978 1.25606 1.02284 1.01126 0.97759 1.69806 1.34791 1.41772 1.15607 0.85189 0.79776 0.77706 0.76968 1.20346 1.21793 1.20342 1.46019 1.64500 1.15023 1.08831 1.17796 0.77867 0.85762 0.82895 1.90809 1.51394 1.15615 1.84809 1.21272 0.96952 0.87979 0.95295 1.21928 0.98422 1.03438 0.90366 1.20914 0.91453 0.88577 1.01093 1.21083 1.05685 0.97884 0.91736 1.75416 1.17618 0.95419 1.25212 1.78088 1.11393 1.18755 0.89551 1.44757 1.47753 1.09148 1.10275 0.67509 1.19911 1.03561 0.87876 0.92809 1.66197 1.12158 1.08707 1.29494 0.93193 0.90085 0.91522 0.88976 0.90130 0.92105 0.92139 0.92081 0.92149 0.96798 0.96810 0.79387 0.93839 0.74702 0.79942 0.79015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.48 71.98 0.68 -1.49 16 2 C 0.14 2.28 2.57 44.99 0.12 2.39 16 3 H 0.08 1.55 7.58 -2.38 -0.02 1.53 16 4 C -0.12 -1.90 4.75 30.59 0.15 -1.75 16 5 C -0.11 -2.36 5.10 30.60 0.16 -2.20 16 6 C -0.11 -3.39 5.33 30.60 0.16 -3.22 16 7 C 0.15 6.03 6.26 86.38 0.54 6.57 16 8 N -0.75 -39.22 5.60 -343.46 -1.92 -41.15 16 9 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 10 H 0.07 4.00 7.83 -2.90 -0.02 3.97 16 11 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 12 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 13 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 N -0.69 -11.53 4.52 -445.16 -2.01 -13.54 16 18 C 0.57 11.05 7.77 86.87 0.68 11.73 16 19 O -0.55 -13.14 15.95 -3.77 -0.06 -13.20 16 20 C 0.14 2.36 6.74 42.05 0.28 2.64 16 21 C -0.12 -1.49 9.55 22.35 0.21 -1.28 16 22 C 0.01 0.12 10.16 22.35 0.23 0.34 16 23 C -0.04 -0.62 7.38 39.83 0.29 -0.33 16 24 N -0.26 -5.17 12.43 -52.29 -0.65 -5.82 16 25 N 0.01 0.10 13.28 37.02 0.49 0.59 16 26 N -0.39 -5.43 7.06 -55.42 -0.39 -5.82 16 27 H 0.47 3.45 8.96 -219.84 -1.97 1.48 16 28 C 0.20 3.51 8.56 134.30 1.15 4.66 16 29 N -0.45 -7.74 9.54 -182.09 -1.74 -9.48 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.36 7.75 -2.39 -0.02 1.34 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.37 20.56 7.67 -92.70 -0.71 19.85 16 42 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.42 6.18 7.91 -92.71 -0.73 5.44 16 44 H 0.18 1.72 7.61 -2.91 -0.02 1.70 16 45 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -74.24 384.57 -0.38 -74.62 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -2.36 Total: 24.36 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 5.95 Total: 0.46 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -5.94 Total: -134.80 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.06 Total: -13.20 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -74.24 -0.38 -74.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171152085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.636 kcal (2) G-P(sol) polarization free energy of solvation -74.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds