Wall clock time and date at job start Tue Mar 31 2020 18:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46966 * 2 1 4 4 C 1.53004 * 109.47228 * 119.99806 * 2 1 3 5 5 C 1.53002 * 109.47057 * 184.99831 * 4 2 1 6 6 C 1.53000 * 109.46727 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47071 * 180.02562 * 6 5 4 8 8 N 1.46494 * 109.47369 * 180.02562 * 7 6 5 9 9 C 1.36941 * 120.00261 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99547 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00140 * 180.02562 * 9 8 7 12 12 N 1.31616 * 119.99889 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99880 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47432 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47193 * 119.99778 * 13 11 9 16 16 H 1.48504 * 109.47108 * 239.99641 * 13 11 9 17 17 N 1.46494 * 109.47233 * 239.99781 * 2 1 3 18 18 C 1.34783 * 119.99993 * 84.99768 * 17 2 1 19 19 O 1.21562 * 119.99855 * 0.02562 * 18 17 2 20 20 C 1.47719 * 119.99964 * 179.97438 * 18 17 2 21 21 C 1.40114 * 120.35342 * 0.02562 * 20 18 17 22 22 N 1.31265 * 121.14834 * 179.72038 * 21 20 18 23 23 C 1.32713 * 121.80088 * 0.27659 * 22 21 20 24 24 N 1.37124 * 133.40258 * 179.97438 * 23 22 21 25 25 H 0.96996 * 126.59413 * 0.04315 * 24 23 22 26 26 N 1.40189 * 106.81548 * 180.02562 * 24 23 22 27 27 N 1.28662 * 109.51540 * 359.97438 * 26 24 23 28 28 C 1.35336 * 109.99860 * 0.02562 * 27 26 24 29 29 C 1.39436 * 120.35195 * 180.29927 * 20 18 17 30 30 H 1.09000 * 109.47298 * 300.00134 * 1 2 3 31 31 H 1.08996 * 109.46969 * 60.00278 * 1 2 3 32 32 H 1.09001 * 109.46966 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47002 * 305.00197 * 4 2 1 34 34 H 1.09003 * 109.46678 * 64.99710 * 4 2 1 35 35 H 1.08996 * 109.46990 * 300.00017 * 5 4 2 36 36 H 1.09005 * 109.46753 * 60.00490 * 5 4 2 37 37 H 1.09005 * 109.46841 * 300.00048 * 6 5 4 38 38 H 1.08998 * 109.47238 * 60.00281 * 6 5 4 39 39 H 1.09002 * 109.46962 * 300.00318 * 7 6 5 40 40 H 1.08998 * 109.47190 * 59.99847 * 7 6 5 41 41 H 0.97003 * 119.99983 * 359.97438 * 8 7 6 42 42 H 0.97003 * 119.99889 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00373 * 264.99880 * 17 2 1 44 44 H 1.08002 * 119.42781 * 0.02562 * 21 20 18 45 45 H 1.08001 * 120.95085 * 359.94281 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 6 4.0749 -1.3350 2.5626 7 6 5.5996 -1.2266 2.6274 8 7 6.0881 -1.9182 3.8229 9 6 7.4301 -1.9539 4.0930 10 1 8.1284 -1.4725 3.4245 11 6 7.8929 -2.6096 5.2256 12 7 7.0419 -3.1967 6.0400 13 14 9.7236 -2.6589 5.5936 14 1 10.4620 -1.9301 4.5311 15 1 9.9820 -2.0156 6.9069 16 1 10.1824 -4.0707 5.6352 17 7 2.0183 -0.6906 -1.1961 18 6 2.1470 -0.0183 -2.3571 19 8 1.8583 1.1613 -2.4116 20 6 2.6400 -0.7146 -3.5631 21 6 2.9754 -2.0739 -3.5085 22 7 3.4098 -2.7093 -4.5718 23 6 3.5564 -2.0979 -5.7406 24 7 3.9805 -2.5158 -6.9758 25 1 4.2682 -3.4104 -7.2163 26 7 3.9180 -1.4017 -7.8244 27 7 3.4901 -0.3829 -7.1653 28 6 3.2470 -0.7317 -5.8805 29 6 2.7819 -0.0247 -4.7665 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4260 36 1 3.8532 0.4371 1.3574 37 1 3.6402 -0.8758 3.4505 38 1 3.7866 -2.3853 2.5185 39 1 6.0346 -1.6854 1.7395 40 1 5.8876 -0.1763 2.6717 41 1 5.4608 -2.3502 4.4236 42 1 7.3653 -3.6547 6.8316 43 1 2.2491 -1.6318 -1.1525 44 1 2.8701 -2.6094 -2.5765 45 1 2.5345 1.0242 -4.8379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171267509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:23 Heat of formation + Delta-G solvation = 83.100712 kcal Electronic energy + Delta-G solvation = -26829.329365 eV Core-core repulsion = 22883.802040 eV Total energy + Delta-G solvation = -3945.527325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.94083 -40.55675 -38.83288 -37.09105 -35.34301 -34.56213 -33.41798 -32.35492 -32.06123 -30.84547 -30.10222 -27.49181 -25.60703 -25.06178 -24.17484 -23.25968 -22.36202 -21.46707 -20.95237 -20.70252 -19.29644 -19.06757 -17.51105 -17.11878 -17.00195 -16.68880 -16.28620 -15.36244 -15.06310 -14.80094 -14.61283 -14.32732 -14.02875 -13.83253 -13.67993 -13.47282 -13.19711 -13.10090 -12.99049 -12.95852 -12.54485 -12.42034 -12.09794 -11.81748 -11.52490 -11.32352 -11.04218 -10.84358 -10.75222 -10.68822 -10.43458 -10.33869 -10.07601 -9.98267 -9.93668 -9.71675 -9.66674 -9.36604 -8.87209 -6.91207 -5.76592 -3.04890 -0.38122 0.02935 1.42618 1.48956 2.29954 2.60698 3.12115 3.25861 3.43034 3.48692 3.50979 3.62987 3.67608 3.99306 4.07518 4.33500 4.49334 4.62565 4.71351 4.82317 4.91306 5.09820 5.18339 5.20109 5.33529 5.39457 5.49212 5.51863 5.56867 5.64672 5.73272 5.83416 5.90527 6.04845 6.07559 6.11669 6.27173 6.28858 6.36230 6.43999 6.86114 6.87796 6.91616 7.07432 7.18389 7.70675 7.77442 8.42929 9.53763 10.12922 10.47256 11.46555 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.002117 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.012881 B =13222.424915 C =15132.528453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.715 5.715 18 C 0.572 3.428 19 O -0.530 6.530 20 C -0.208 4.208 21 C 0.215 3.785 22 N -0.485 5.485 23 C 0.295 3.705 24 N -0.482 5.482 25 H 0.455 0.545 26 N 0.021 4.979 27 N -0.190 5.190 28 C -0.075 4.075 29 C 0.086 3.914 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.400 0.600 44 H 0.180 0.820 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.502 2.291 -23.405 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.111 0.889 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 N -0.367 5.367 18 C 0.357 3.643 19 O -0.407 6.407 20 C -0.217 4.217 21 C 0.042 3.958 22 N -0.199 5.199 23 C 0.050 3.950 24 N -0.207 5.207 25 H 0.304 0.696 26 N 0.038 4.962 27 N -0.072 5.072 28 C -0.200 4.200 29 C 0.055 3.945 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.236 0.764 44 H 0.197 0.803 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.069 2.863 -24.921 29.263 hybrid contribution 0.876 -0.971 1.216 1.786 sum -14.193 1.892 -23.705 27.694 Atomic orbital electron populations 1.22186 0.95089 1.02256 1.02702 1.21128 0.93908 0.97854 0.83342 0.88915 1.21962 0.96924 1.01030 0.96674 1.21537 0.93883 1.01231 0.98678 1.21729 0.97252 1.00280 0.97116 1.20650 0.91015 0.95330 0.90565 1.42397 1.05352 1.64890 1.25275 1.19295 0.83933 1.28200 1.05467 0.91193 1.24752 0.97741 1.00986 0.97749 1.69670 1.32681 1.40783 1.15200 0.86113 0.85077 0.77220 0.77784 1.20568 1.21845 1.21866 1.46007 1.67008 1.14097 1.09545 1.17655 0.77755 0.86363 0.82497 1.90819 1.50016 1.15117 1.84699 1.20780 1.09402 0.95885 0.95614 1.23104 0.87156 0.90184 0.95402 1.66700 1.17889 1.38660 0.96664 1.19610 0.96029 0.91038 0.88302 1.47582 1.53795 1.13978 1.05327 0.69610 1.81770 1.13972 0.87242 1.13231 1.74922 1.09423 1.19873 1.02958 1.20412 1.11825 0.93727 0.94071 1.21095 0.85454 1.00854 0.87102 0.91305 0.92154 0.92352 0.89957 0.91182 0.92138 0.91865 0.92020 0.92080 0.96647 0.96578 0.78347 0.93592 0.76447 0.80335 0.81508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.48 37.16 0.35 -0.80 16 2 C 0.14 1.10 2.57 -67.93 -0.17 0.93 16 3 H 0.09 0.89 7.58 -51.93 -0.39 0.49 16 4 C -0.13 -1.02 4.75 -26.73 -0.13 -1.15 16 5 C -0.12 -1.24 5.10 -26.73 -0.14 -1.38 16 6 C -0.13 -1.86 5.33 -26.73 -0.14 -2.00 16 7 C 0.15 3.02 6.26 -4.05 -0.03 2.99 16 8 N -0.74 -18.81 5.60 -59.91 -0.34 -19.15 16 9 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 13 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 N -0.71 -4.93 4.48 -54.79 -0.25 -5.17 16 18 C 0.57 5.04 7.74 -12.38 -0.10 4.95 16 19 O -0.53 -6.48 16.06 5.31 0.09 -6.40 16 20 C -0.21 -1.57 5.88 -104.87 -0.62 -2.18 16 21 C 0.22 1.37 10.69 -17.09 -0.18 1.19 16 22 N -0.49 -3.94 10.37 -12.03 -0.12 -4.06 16 23 C 0.30 2.56 8.49 -155.93 -1.32 1.24 16 24 N -0.48 -3.42 7.53 31.15 0.23 -3.18 16 25 H 0.46 1.68 8.96 -182.53 -1.64 0.04 16 26 N 0.02 0.19 13.82 60.35 0.83 1.03 16 27 N -0.19 -1.95 12.40 32.17 0.40 -1.55 16 28 C -0.07 -0.70 7.27 -84.74 -0.62 -1.32 16 29 C 0.09 0.71 9.75 -38.51 -0.38 0.33 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.62 7.75 -51.93 -0.40 0.21 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.22 7.67 -40.82 -0.31 9.90 16 42 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.40 1.79 6.64 -40.82 -0.27 1.51 16 44 H 0.18 0.55 6.39 -52.49 -0.34 0.21 16 45 H 0.17 1.26 7.71 -52.49 -0.40 0.86 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -35.41 383.27 -8.92 -44.33 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.53 Total: 3.24 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -3.71 Total: -4.69 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 1.49 Total: -59.77 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.09 Total: -6.40 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.41 -8.92 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171267509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.431 kcal (2) G-P(sol) polarization free energy of solvation -35.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds