Wall clock time and date at job start Tue Mar 31 2020 18:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46966 * 2 1 4 4 C 1.53004 * 109.47228 * 119.99806 * 2 1 3 5 5 C 1.53002 * 109.47057 * 184.99831 * 4 2 1 6 6 C 1.53000 * 109.46727 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47071 * 180.02562 * 6 5 4 8 8 N 1.46494 * 109.47369 * 180.02562 * 7 6 5 9 9 C 1.36941 * 120.00261 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99547 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00140 * 180.02562 * 9 8 7 12 12 N 1.31616 * 119.99889 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99880 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47432 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47193 * 119.99778 * 13 11 9 16 16 H 1.48504 * 109.47108 * 239.99641 * 13 11 9 17 17 N 1.46494 * 109.47233 * 239.99781 * 2 1 3 18 18 C 1.34783 * 119.99993 * 84.99768 * 17 2 1 19 19 O 1.21562 * 119.99855 * 0.02562 * 18 17 2 20 20 C 1.47719 * 119.99964 * 179.97438 * 18 17 2 21 21 C 1.40114 * 120.35342 * 0.02562 * 20 18 17 22 22 N 1.31265 * 121.14834 * 179.72038 * 21 20 18 23 23 C 1.32713 * 121.80088 * 0.27659 * 22 21 20 24 24 N 1.37124 * 133.40258 * 179.97438 * 23 22 21 25 25 H 0.96996 * 126.59413 * 0.04315 * 24 23 22 26 26 N 1.40189 * 106.81548 * 180.02562 * 24 23 22 27 27 N 1.28662 * 109.51540 * 359.97438 * 26 24 23 28 28 C 1.35336 * 109.99860 * 0.02562 * 27 26 24 29 29 C 1.39436 * 120.35195 * 180.29927 * 20 18 17 30 30 H 1.09000 * 109.47298 * 300.00134 * 1 2 3 31 31 H 1.08996 * 109.46969 * 60.00278 * 1 2 3 32 32 H 1.09001 * 109.46966 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47002 * 305.00197 * 4 2 1 34 34 H 1.09003 * 109.46678 * 64.99710 * 4 2 1 35 35 H 1.08996 * 109.46990 * 300.00017 * 5 4 2 36 36 H 1.09005 * 109.46753 * 60.00490 * 5 4 2 37 37 H 1.09005 * 109.46841 * 300.00048 * 6 5 4 38 38 H 1.08998 * 109.47238 * 60.00281 * 6 5 4 39 39 H 1.09002 * 109.46962 * 300.00318 * 7 6 5 40 40 H 1.08998 * 109.47190 * 59.99847 * 7 6 5 41 41 H 0.97003 * 119.99983 * 359.97438 * 8 7 6 42 42 H 0.97003 * 119.99889 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00373 * 264.99880 * 17 2 1 44 44 H 1.08002 * 119.42781 * 0.02562 * 21 20 18 45 45 H 1.08001 * 120.95085 * 359.94281 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 6 4.0749 -1.3350 2.5626 7 6 5.5996 -1.2266 2.6274 8 7 6.0881 -1.9182 3.8229 9 6 7.4301 -1.9539 4.0930 10 1 8.1284 -1.4725 3.4245 11 6 7.8929 -2.6096 5.2256 12 7 7.0419 -3.1967 6.0400 13 14 9.7236 -2.6589 5.5936 14 1 10.4620 -1.9301 4.5311 15 1 9.9820 -2.0156 6.9069 16 1 10.1824 -4.0707 5.6352 17 7 2.0183 -0.6906 -1.1961 18 6 2.1470 -0.0183 -2.3571 19 8 1.8583 1.1613 -2.4116 20 6 2.6400 -0.7146 -3.5631 21 6 2.9754 -2.0739 -3.5085 22 7 3.4098 -2.7093 -4.5718 23 6 3.5564 -2.0979 -5.7406 24 7 3.9805 -2.5158 -6.9758 25 1 4.2682 -3.4104 -7.2163 26 7 3.9180 -1.4017 -7.8244 27 7 3.4901 -0.3829 -7.1653 28 6 3.2470 -0.7317 -5.8805 29 6 2.7819 -0.0247 -4.7665 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4260 36 1 3.8532 0.4371 1.3574 37 1 3.6402 -0.8758 3.4505 38 1 3.7866 -2.3853 2.5185 39 1 6.0346 -1.6854 1.7395 40 1 5.8876 -0.1763 2.6717 41 1 5.4608 -2.3502 4.4236 42 1 7.3653 -3.6547 6.8316 43 1 2.2491 -1.6318 -1.1525 44 1 2.8701 -2.6094 -2.5765 45 1 2.5345 1.0242 -4.8379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171267509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:22 Heat of formation + Delta-G solvation = 57.469372 kcal Electronic energy + Delta-G solvation = -26830.440823 eV Core-core repulsion = 22883.802040 eV Total energy + Delta-G solvation = -3946.638783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.57593 -41.23760 -39.46804 -37.99106 -36.81886 -35.20255 -34.79062 -33.28145 -32.86991 -32.15006 -30.97636 -28.76075 -26.29426 -25.89716 -25.56454 -23.90741 -23.67537 -22.34352 -21.94479 -21.61622 -19.91041 -19.71431 -19.10648 -18.07988 -17.77414 -17.33408 -16.97744 -16.67336 -16.21708 -15.97704 -15.49119 -15.25877 -15.21114 -15.01674 -14.53768 -14.36539 -14.29312 -14.07656 -13.94250 -13.76918 -13.23365 -13.18049 -12.97328 -12.88375 -12.80601 -12.73036 -12.39990 -12.22742 -12.09875 -11.85741 -11.74087 -11.49898 -11.34668 -11.31411 -10.93071 -10.73318 -10.56873 -10.36136 -10.01166 -8.99254 -7.95859 -5.24396 -0.99903 -0.59123 0.83453 0.86797 1.47390 1.48045 1.58265 1.63184 1.97523 2.49473 2.55922 2.68106 3.02847 3.05349 3.37764 3.40336 3.54576 3.65035 3.78464 4.08500 4.12438 4.15166 4.20356 4.43201 4.47673 4.49279 4.62151 4.68570 4.72703 4.84857 4.92627 4.94816 5.01015 5.06832 5.10582 5.18444 5.35237 5.41576 5.48216 5.48784 5.60109 5.62010 5.62697 6.27065 6.27805 6.49021 6.54538 7.15267 7.33416 8.11259 8.33789 9.27924 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.002117 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.012881 B =13222.424915 C =15132.528453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.107 4.107 6 C -0.113 4.113 7 C 0.146 3.854 8 N -0.749 5.749 9 C -0.246 4.246 10 H 0.073 0.927 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.973 3.027 14 H -0.268 1.268 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.702 5.702 18 C 0.574 3.426 19 O -0.568 6.568 20 C -0.204 4.204 21 C 0.227 3.773 22 N -0.493 5.493 23 C 0.288 3.712 24 N -0.466 5.466 25 H 0.469 0.531 26 N 0.011 4.989 27 N -0.213 5.213 28 C -0.089 4.089 29 C 0.081 3.919 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.011 0.989 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.415 0.585 44 H 0.216 0.784 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.697 1.329 -23.583 28.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.145 4.145 6 C -0.151 4.151 7 C 0.020 3.980 8 N -0.392 5.392 9 C -0.378 4.378 10 H 0.091 0.909 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.802 3.198 14 H -0.192 1.192 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.355 5.355 18 C 0.361 3.639 19 O -0.448 6.448 20 C -0.213 4.213 21 C 0.053 3.947 22 N -0.207 5.207 23 C 0.043 3.957 24 N -0.193 5.193 25 H 0.320 0.680 26 N 0.028 4.972 27 N -0.094 5.094 28 C -0.215 4.215 29 C 0.050 3.950 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.029 0.971 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.253 0.747 44 H 0.232 0.768 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.258 1.882 -25.150 29.476 hybrid contribution 0.916 -0.659 1.271 1.699 sum -14.342 1.223 -23.879 27.882 Atomic orbital electron populations 1.22133 0.94193 1.03086 1.02326 1.21022 0.94507 0.96938 0.83391 0.90854 1.21865 0.94564 1.02294 0.96821 1.21459 0.95919 1.00199 0.96950 1.21610 0.93459 1.01120 0.98898 1.20888 0.94526 0.94151 0.88418 1.42650 1.04462 1.65293 1.26799 1.19679 0.85421 1.27388 1.05344 0.90933 1.25586 1.02112 1.01341 0.97935 1.69814 1.34535 1.41950 1.15667 0.85073 0.80059 0.77071 0.77562 1.19211 1.21943 1.21790 1.45912 1.66095 1.14722 1.08735 1.17770 0.77208 0.85870 0.83072 1.90809 1.51841 1.16862 1.85289 1.20696 1.09463 0.96367 0.94755 1.23656 0.85303 0.89652 0.96109 1.66827 1.18540 1.38664 0.96688 1.19780 0.96137 0.90926 0.88872 1.47567 1.52808 1.14251 1.04698 0.67954 1.81704 1.14294 0.87644 1.13594 1.74894 1.10332 1.20557 1.03603 1.20570 1.12563 0.94356 0.94044 1.21179 0.85430 1.01045 0.87328 0.90665 0.93616 0.90872 0.89591 0.89272 0.91078 0.92660 0.92626 0.91618 0.96282 0.97089 0.79387 0.93933 0.74702 0.76792 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.48 71.98 0.68 -1.21 16 2 C 0.15 1.94 2.57 44.99 0.12 2.06 16 3 H 0.07 1.32 7.58 -2.39 -0.02 1.30 16 4 C -0.12 -1.53 4.75 30.60 0.15 -1.38 16 5 C -0.11 -2.05 5.10 30.60 0.16 -1.89 16 6 C -0.11 -3.13 5.33 30.59 0.16 -2.97 16 7 C 0.15 5.66 6.26 86.38 0.54 6.20 16 8 N -0.75 -38.15 5.60 -343.46 -1.92 -40.08 16 9 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 10 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 11 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 12 N -0.97 -59.15 13.06 21.65 0.28 -58.86 16 13 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 17 N -0.70 -7.90 4.48 -445.53 -2.00 -9.90 16 18 C 0.57 9.32 7.74 86.75 0.67 10.00 16 19 O -0.57 -13.76 16.06 -3.91 -0.06 -13.82 16 20 C -0.20 -2.78 5.88 -20.03 -0.12 -2.89 16 21 C 0.23 2.30 10.69 85.23 0.91 3.21 16 22 N -0.49 -7.00 10.37 -191.98 -1.99 -8.99 16 23 C 0.29 4.70 8.49 134.01 1.14 5.83 16 24 N -0.47 -6.22 7.53 -55.37 -0.42 -6.64 16 25 H 0.47 2.93 8.96 -213.27 -1.91 1.02 16 26 N 0.01 0.19 13.82 37.02 0.51 0.70 16 27 N -0.21 -4.40 12.40 -52.14 -0.65 -5.05 16 28 C -0.09 -1.65 7.27 39.63 0.29 -1.36 16 29 C 0.08 1.32 9.75 22.96 0.22 1.54 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.22 7.75 -2.39 -0.02 1.20 16 36 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.37 20.04 7.67 -92.71 -0.71 19.32 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.41 2.13 6.64 -92.71 -0.62 1.52 16 44 H 0.22 0.43 6.39 -2.91 -0.02 0.41 16 45 H 0.17 2.63 7.71 -2.91 -0.02 2.60 16 Total: -1.00 -76.47 383.27 -0.17 -76.65 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -2.18 Total: 17.77 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 6.23 Total: 0.08 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -6.18 Total: -128.81 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.06 Total: -13.82 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -76.47 -0.17 -76.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171267509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.116 kcal (2) G-P(sol) polarization free energy of solvation -76.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds