Wall clock time and date at job start Tue Mar 31 2020 18:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47169 * 2 1 4 4 C 1.52998 * 109.46846 * 239.99856 * 2 1 3 5 5 C 1.53006 * 109.46927 * 174.99781 * 4 2 1 6 6 C 1.52998 * 109.46927 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47038 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47396 * 180.02562 * 7 6 5 9 9 C 1.36941 * 120.00179 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99404 * 359.97438 * 9 8 7 11 11 C 1.38811 * 119.99814 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99594 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00020 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47260 * 90.00282 * 13 11 9 15 15 H 1.48501 * 109.46418 * 210.00017 * 13 11 9 16 16 H 1.48494 * 109.47188 * 329.99843 * 13 11 9 17 17 N 1.46503 * 109.46988 * 120.00150 * 2 1 3 18 18 C 1.34773 * 120.00056 * 275.00079 * 17 2 1 19 19 O 1.21553 * 120.00028 * 359.97438 * 18 17 2 20 20 C 1.47875 * 120.00063 * 180.02562 * 18 17 2 21 21 C 1.39448 * 121.11292 * 359.97438 * 20 18 17 22 22 C 1.38625 * 119.37463 * 179.97438 * 21 20 18 23 23 N 1.31582 * 121.63344 * 359.97438 * 22 21 20 24 24 C 1.32205 * 121.86786 * 0.02562 * 23 22 21 25 25 N 1.37212 * 134.67144 * 179.97438 * 24 23 22 26 26 H 0.97000 * 125.86811 * 0.02562 * 25 24 23 27 27 N 1.28776 * 108.26395 * 180.02562 * 25 24 23 28 28 N 1.28693 * 111.75470 * 0.02562 * 27 25 24 29 29 C 1.34394 * 109.15559 * 359.97438 * 28 27 25 30 30 H 1.09007 * 109.47261 * 59.99552 * 1 2 3 31 31 H 1.08994 * 109.47602 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47064 * 300.00044 * 1 2 3 33 33 H 1.08993 * 109.47436 * 294.99917 * 4 2 1 34 34 H 1.09003 * 109.47291 * 55.00770 * 4 2 1 35 35 H 1.08989 * 109.47385 * 300.00765 * 5 4 2 36 36 H 1.09003 * 109.46328 * 60.00399 * 5 4 2 37 37 H 1.09001 * 109.47754 * 300.00118 * 6 5 4 38 38 H 1.08994 * 109.47268 * 60.00951 * 6 5 4 39 39 H 1.09006 * 109.46883 * 300.00190 * 7 6 5 40 40 H 1.09004 * 109.47307 * 60.00026 * 7 6 5 41 41 H 0.96996 * 119.99975 * 0.02562 * 8 7 6 42 42 H 0.96997 * 119.99786 * 180.02562 * 12 11 9 43 43 H 0.97001 * 119.99879 * 94.99431 * 17 2 1 44 44 H 1.08005 * 120.31592 * 359.95757 * 21 20 18 45 45 H 1.08002 * 119.18001 * 179.72356 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0747 -1.3340 -2.5633 7 6 5.5995 -1.2266 -2.6275 8 7 6.0878 -1.9162 -3.8243 9 6 7.4298 -1.9523 -4.0941 10 1 8.1282 -1.4721 -3.4248 11 6 7.8923 -2.6053 -5.2284 12 7 9.1824 -2.6404 -5.4875 13 14 6.6840 -3.4340 -6.3870 14 1 6.2494 -2.4650 -7.4250 15 1 7.3405 -4.5959 -7.0384 16 1 5.5017 -3.8999 -5.6188 17 7 2.0183 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8583 1.1611 2.4117 20 6 2.6404 -0.7154 3.5644 21 6 2.9787 -2.0677 3.5280 22 6 3.4381 -2.6850 4.6811 23 7 3.5644 -2.0262 5.8131 24 6 3.2602 -0.7434 5.9118 25 7 3.2877 0.1791 6.9272 26 1 3.5693 0.0113 7.8401 27 7 2.8755 1.3060 6.4598 28 7 2.5708 1.2222 5.2123 29 6 2.7846 -0.0355 4.7896 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1370 35 1 3.8531 0.4369 -1.3573 36 1 3.9993 -1.0729 -0.4260 37 1 3.7863 -2.3843 -2.5201 38 1 3.6401 -0.8741 -3.4508 39 1 5.8882 -0.1763 -2.6705 40 1 6.0339 -1.6868 -1.7399 41 1 5.4604 -2.3465 -4.4259 42 1 9.5055 -3.0963 -6.2803 43 1 2.2489 -1.6319 1.1526 44 1 2.8835 -2.6290 2.6102 45 1 3.6950 -3.7336 4.6504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171757256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:14 Heat of formation + Delta-G solvation = 94.445274 kcal Electronic energy + Delta-G solvation = -27185.024612 eV Core-core repulsion = 23239.989225 eV Total energy + Delta-G solvation = -3945.035388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.88600 -40.50150 -39.21022 -37.13180 -35.48629 -34.67799 -33.52674 -32.67803 -31.41233 -31.26094 -30.47488 -27.80196 -26.17117 -24.41369 -24.37457 -23.68273 -22.13660 -21.44753 -20.98366 -20.84239 -19.42394 -18.96138 -17.99905 -17.50678 -17.09093 -16.59377 -15.99807 -15.44469 -15.32340 -15.08692 -14.63948 -14.42785 -14.19059 -13.80388 -13.61778 -13.46057 -13.32364 -13.07897 -12.78543 -12.74907 -12.47606 -12.14823 -12.02530 -11.94141 -11.69387 -11.50205 -11.20461 -10.91592 -10.86790 -10.65408 -10.44137 -10.36374 -10.11719 -9.98594 -9.84342 -9.62152 -9.58916 -9.35864 -8.89110 -7.22486 -5.76640 -3.12001 -0.47770 0.32321 1.64584 1.71563 2.40604 2.58862 3.15565 3.25492 3.36342 3.39216 3.44375 3.70080 3.89825 3.94655 4.20728 4.43850 4.57218 4.58926 4.76897 4.86561 4.90681 4.94496 5.14384 5.15570 5.27030 5.31247 5.46059 5.51058 5.55795 5.60661 5.62902 5.77700 5.83926 5.99278 6.04168 6.07540 6.08602 6.15707 6.24354 6.33785 6.76282 6.80081 6.93843 7.09343 7.68515 7.82201 8.00421 8.42711 9.22129 9.94523 10.14682 11.41935 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.002152 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.273820 B =13007.079188 C =14072.381669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.129 4.129 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.714 5.714 18 C 0.553 3.447 19 O -0.499 6.499 20 C -0.009 4.009 21 C -0.139 4.139 22 C 0.163 3.837 23 N -0.457 5.457 24 C 0.214 3.786 25 N -0.405 5.405 26 H 0.458 0.542 27 N 0.004 4.996 28 N -0.210 5.210 29 C 0.003 3.997 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.400 0.600 44 H 0.160 0.840 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.631 -0.471 23.770 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.111 0.889 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.167 4.167 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.367 5.367 18 C 0.337 3.663 19 O -0.372 6.372 20 C -0.026 4.026 21 C -0.162 4.162 22 C -0.009 4.009 23 N -0.171 5.171 24 C -0.029 4.029 25 N -0.135 5.135 26 H 0.307 0.693 27 N 0.021 4.979 28 N -0.086 5.086 29 C -0.126 4.126 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.235 0.765 44 H 0.177 0.823 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -19.627 1.632 24.861 31.717 hybrid contribution -0.377 -1.965 -1.181 2.323 sum -20.005 -0.333 23.680 31.001 Atomic orbital electron populations 1.22185 0.95095 1.02184 1.02763 1.21114 0.93916 0.97908 0.83269 0.88899 1.21953 0.96851 1.00960 0.96746 1.21529 0.93947 1.01399 0.98500 1.21777 0.97288 1.00260 0.97410 1.20632 0.90768 0.95745 0.89969 1.42738 1.05267 1.66225 1.26143 1.19085 0.82328 1.29280 1.06686 0.89295 1.24701 0.95651 1.00770 0.98292 1.69710 1.11726 1.48390 1.28511 0.86507 0.80846 0.79428 0.81504 1.21081 1.21735 1.20368 1.45990 1.67215 1.14092 1.09412 1.17862 0.78977 0.86788 0.82660 1.90889 1.47579 1.14561 1.84203 1.19677 0.97932 0.93139 0.91817 1.22454 0.99047 0.93406 1.01342 1.22896 0.92391 1.00145 0.85477 1.66330 1.16541 1.05017 1.29195 1.19881 1.03266 0.91263 0.88529 1.44732 1.50048 1.05786 1.12939 0.69327 1.78281 1.08674 1.04601 1.06364 1.75597 1.16413 1.15951 1.00609 1.20124 1.05036 0.92620 0.94849 0.91307 0.92407 0.92102 0.91248 0.89991 0.91662 0.91959 0.92152 0.92057 0.95698 0.95805 0.80738 0.93078 0.76455 0.82264 0.79816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 2 C 0.14 1.18 2.57 -67.93 -0.17 1.01 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 4 C -0.13 -1.00 4.75 -26.73 -0.13 -1.13 16 5 C -0.12 -1.22 5.10 -26.73 -0.14 -1.35 16 6 C -0.13 -1.78 5.33 -26.73 -0.14 -1.93 16 7 C 0.16 2.96 6.26 -4.04 -0.03 2.93 16 8 N -0.76 -18.15 5.41 -59.90 -0.32 -18.47 16 9 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 10 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 11 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 12 N -0.94 -29.58 13.97 55.49 0.78 -28.81 16 13 Si 0.89 22.06 27.74 -169.99 -4.71 17.35 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 16 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 17 N -0.71 -5.52 4.49 -54.74 -0.25 -5.76 16 18 C 0.55 5.95 7.76 -12.32 -0.10 5.86 16 19 O -0.50 -7.45 15.93 5.32 0.08 -7.37 16 20 C -0.01 -0.09 5.92 -104.51 -0.62 -0.70 16 21 C -0.14 -0.72 9.61 -38.99 -0.37 -1.10 16 22 C 0.16 0.82 11.14 -17.52 -0.20 0.62 16 23 N -0.46 -3.54 10.35 -12.38 -0.13 -3.67 16 24 C 0.21 1.98 8.56 -156.21 -1.34 0.65 16 25 N -0.40 -3.10 7.06 31.11 0.22 -2.88 16 26 H 0.46 1.58 8.96 -190.25 -1.71 -0.13 16 27 N 0.00 0.04 13.29 60.35 0.80 0.84 16 28 N -0.21 -2.79 11.92 32.23 0.38 -2.41 16 29 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.62 7.75 -51.93 -0.40 0.22 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.36 8.32 5.53 -40.82 -0.23 8.09 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.40 1.93 6.75 -40.82 -0.28 1.66 16 44 H 0.16 0.26 6.53 -52.48 -0.34 -0.08 16 45 H 0.19 0.20 8.06 -52.49 -0.42 -0.22 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -38.63 379.27 -8.74 -47.37 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.59 Total: 1.90 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.72 Total: -3.81 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 1.48 Total: -61.15 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.08 Total: -7.37 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.63 -8.74 -47.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171757256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.812 kcal (2) G-P(sol) polarization free energy of solvation -38.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds