Wall clock time and date at job start Tue Mar 31 2020 18:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47169 * 2 1 4 4 C 1.52998 * 109.46846 * 239.99856 * 2 1 3 5 5 C 1.53006 * 109.46927 * 174.99781 * 4 2 1 6 6 C 1.52998 * 109.46927 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47038 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47396 * 180.02562 * 7 6 5 9 9 C 1.36941 * 120.00179 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99404 * 359.97438 * 9 8 7 11 11 C 1.38811 * 119.99814 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99594 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00020 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47260 * 90.00282 * 13 11 9 15 15 H 1.48501 * 109.46418 * 210.00017 * 13 11 9 16 16 H 1.48494 * 109.47188 * 329.99843 * 13 11 9 17 17 N 1.46503 * 109.46988 * 120.00150 * 2 1 3 18 18 C 1.34773 * 120.00056 * 275.00079 * 17 2 1 19 19 O 1.21553 * 120.00028 * 359.97438 * 18 17 2 20 20 C 1.47875 * 120.00063 * 180.02562 * 18 17 2 21 21 C 1.39448 * 121.11292 * 359.97438 * 20 18 17 22 22 C 1.38625 * 119.37463 * 179.97438 * 21 20 18 23 23 N 1.31582 * 121.63344 * 359.97438 * 22 21 20 24 24 C 1.32205 * 121.86786 * 0.02562 * 23 22 21 25 25 N 1.37212 * 134.67144 * 179.97438 * 24 23 22 26 26 H 0.97000 * 125.86811 * 0.02562 * 25 24 23 27 27 N 1.28776 * 108.26395 * 180.02562 * 25 24 23 28 28 N 1.28693 * 111.75470 * 0.02562 * 27 25 24 29 29 C 1.34394 * 109.15559 * 359.97438 * 28 27 25 30 30 H 1.09007 * 109.47261 * 59.99552 * 1 2 3 31 31 H 1.08994 * 109.47602 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47064 * 300.00044 * 1 2 3 33 33 H 1.08993 * 109.47436 * 294.99917 * 4 2 1 34 34 H 1.09003 * 109.47291 * 55.00770 * 4 2 1 35 35 H 1.08989 * 109.47385 * 300.00765 * 5 4 2 36 36 H 1.09003 * 109.46328 * 60.00399 * 5 4 2 37 37 H 1.09001 * 109.47754 * 300.00118 * 6 5 4 38 38 H 1.08994 * 109.47268 * 60.00951 * 6 5 4 39 39 H 1.09006 * 109.46883 * 300.00190 * 7 6 5 40 40 H 1.09004 * 109.47307 * 60.00026 * 7 6 5 41 41 H 0.96996 * 119.99975 * 0.02562 * 8 7 6 42 42 H 0.96997 * 119.99786 * 180.02562 * 12 11 9 43 43 H 0.97001 * 119.99879 * 94.99431 * 17 2 1 44 44 H 1.08005 * 120.31592 * 359.95757 * 21 20 18 45 45 H 1.08002 * 119.18001 * 179.72356 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0747 -1.3340 -2.5633 7 6 5.5995 -1.2266 -2.6275 8 7 6.0878 -1.9162 -3.8243 9 6 7.4298 -1.9523 -4.0941 10 1 8.1282 -1.4721 -3.4248 11 6 7.8923 -2.6053 -5.2284 12 7 9.1824 -2.6404 -5.4875 13 14 6.6840 -3.4340 -6.3870 14 1 6.2494 -2.4650 -7.4250 15 1 7.3405 -4.5959 -7.0384 16 1 5.5017 -3.8999 -5.6188 17 7 2.0183 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8583 1.1611 2.4117 20 6 2.6404 -0.7154 3.5644 21 6 2.9787 -2.0677 3.5280 22 6 3.4381 -2.6850 4.6811 23 7 3.5644 -2.0262 5.8131 24 6 3.2602 -0.7434 5.9118 25 7 3.2877 0.1791 6.9272 26 1 3.5693 0.0113 7.8401 27 7 2.8755 1.3060 6.4598 28 7 2.5708 1.2222 5.2123 29 6 2.7846 -0.0355 4.7896 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1370 35 1 3.8531 0.4369 -1.3573 36 1 3.9993 -1.0729 -0.4260 37 1 3.7863 -2.3843 -2.5201 38 1 3.6401 -0.8741 -3.4508 39 1 5.8882 -0.1763 -2.6705 40 1 6.0339 -1.6868 -1.7399 41 1 5.4604 -2.3465 -4.4259 42 1 9.5055 -3.0963 -6.2803 43 1 2.2489 -1.6319 1.1526 44 1 2.8835 -2.6290 2.6102 45 1 3.6950 -3.7336 4.6504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171757256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:13 Heat of formation + Delta-G solvation = 64.264911 kcal Electronic energy + Delta-G solvation = -27186.333331 eV Core-core repulsion = 23239.989225 eV Total energy + Delta-G solvation = -3946.344107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.55186 -41.21430 -39.82084 -38.07279 -36.93999 -35.36376 -34.82067 -33.68685 -32.86005 -31.93402 -31.44111 -29.01815 -26.80688 -25.75568 -24.99257 -24.55327 -23.44589 -22.44610 -22.05972 -21.65687 -20.07429 -19.65234 -19.53401 -18.61473 -17.77556 -17.29762 -16.66456 -16.59798 -16.26846 -16.05404 -15.84668 -15.68749 -15.19125 -14.86098 -14.62166 -14.40278 -14.21647 -14.13853 -13.91619 -13.54274 -13.51726 -13.06424 -12.93335 -12.89607 -12.81838 -12.70754 -12.43934 -12.22461 -12.04805 -11.86070 -11.73436 -11.51786 -11.40771 -11.34715 -10.95173 -10.64577 -10.42848 -10.31153 -10.05315 -9.28927 -8.02298 -5.36503 -1.08736 -0.21302 0.96411 1.10646 1.39392 1.44680 1.52238 1.73877 1.92280 2.50341 2.53769 2.68360 3.14253 3.28866 3.30863 3.40037 3.53421 3.72390 3.93743 4.05388 4.11629 4.14829 4.33850 4.35066 4.38744 4.43501 4.62029 4.68929 4.69634 4.80203 4.92158 4.95667 5.02707 5.07241 5.14759 5.18929 5.30732 5.36381 5.44654 5.55822 5.59054 5.62707 5.75854 6.22134 6.40917 6.47732 6.97953 7.09149 7.14836 7.85506 8.05935 9.19422 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.002152 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.273820 B =13007.079188 C =14072.381669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.110 4.110 6 C -0.115 4.115 7 C 0.148 3.852 8 N -0.760 5.760 9 C -0.240 4.240 10 H 0.050 0.950 11 C -0.070 4.070 12 N -0.986 5.986 13 Si 0.963 3.037 14 H -0.279 1.279 15 H -0.295 1.295 16 H -0.244 1.244 17 N -0.696 5.696 18 C 0.551 3.449 19 O -0.554 6.554 20 C -0.041 4.041 21 C -0.107 4.107 22 C 0.174 3.826 23 N -0.466 5.466 24 C 0.205 3.795 25 N -0.384 5.384 26 H 0.474 0.526 27 N -0.013 5.013 28 N -0.261 5.261 29 C -0.026 4.026 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.011 0.989 40 H 0.023 0.977 41 H 0.368 0.632 42 H 0.258 0.742 43 H 0.417 0.583 44 H 0.204 0.796 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.831 -4.022 23.259 32.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.149 4.149 6 C -0.153 4.153 7 C 0.022 3.978 8 N -0.406 5.406 9 C -0.371 4.371 10 H 0.068 0.932 11 C -0.261 4.261 12 N -0.637 5.637 13 Si 0.789 3.211 14 H -0.205 1.205 15 H -0.222 1.222 16 H -0.168 1.168 17 N -0.350 5.350 18 C 0.337 3.663 19 O -0.432 6.432 20 C -0.057 4.057 21 C -0.130 4.130 22 C 0.001 3.999 23 N -0.180 5.180 24 C -0.038 4.038 25 N -0.117 5.117 26 H 0.325 0.675 27 N 0.004 4.996 28 N -0.136 5.136 29 C -0.156 4.156 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.029 0.971 40 H 0.041 0.959 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.256 0.744 44 H 0.220 0.780 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -21.865 -1.918 24.404 32.823 hybrid contribution 0.421 -0.926 -0.958 1.397 sum -21.445 -2.844 23.446 31.901 Atomic orbital electron populations 1.22125 0.94217 1.03212 1.02070 1.21044 0.94528 0.96807 0.83715 0.91706 1.21853 0.94451 1.02493 0.96413 1.21468 0.95987 1.00116 0.97290 1.21661 0.92871 1.01762 0.99028 1.20871 0.94697 0.94221 0.87966 1.42750 1.03420 1.66663 1.27789 1.19059 0.84148 1.28081 1.05850 0.93175 1.25648 0.97767 1.02163 1.00529 1.69912 1.14382 1.49984 1.29406 0.85291 0.79059 0.77856 0.78866 1.20507 1.22166 1.16795 1.45852 1.66060 1.14735 1.08359 1.18166 0.78213 0.86282 0.83656 1.90859 1.50227 1.17009 1.85101 1.19774 1.00423 0.94828 0.90694 1.22997 0.95406 0.91461 1.03120 1.23853 0.89982 1.01780 0.84283 1.66494 1.16881 1.03979 1.30596 1.19999 1.03789 0.91879 0.88164 1.44723 1.48491 1.04980 1.13517 0.67453 1.78167 1.09651 1.05722 1.06054 1.75503 1.18469 1.17922 1.01681 1.20534 1.06198 0.92391 0.96517 0.90455 0.90409 0.94428 0.88605 0.89290 0.93207 0.91154 0.90503 0.91781 0.97070 0.95895 0.79864 0.93293 0.74383 0.77957 0.74999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.48 71.98 0.68 -1.42 16 2 C 0.14 2.14 2.57 44.99 0.12 2.25 16 3 H 0.06 1.37 7.58 -2.38 -0.02 1.35 16 4 C -0.11 -1.38 4.75 30.60 0.15 -1.23 16 5 C -0.11 -2.01 5.10 30.60 0.16 -1.85 16 6 C -0.12 -2.78 5.33 30.59 0.16 -2.62 16 7 C 0.15 5.41 6.26 86.38 0.54 5.95 16 8 N -0.76 -35.13 5.41 -343.44 -1.86 -36.99 16 9 C -0.24 -13.89 10.47 84.03 0.88 -13.01 16 10 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 11 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 12 N -0.99 -63.60 13.97 21.65 0.30 -63.30 16 13 Si 0.96 44.56 27.74 68.60 1.90 46.46 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 15 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 16 H -0.24 -9.83 6.52 99.48 0.65 -9.19 16 17 N -0.70 -9.27 4.49 -445.38 -2.00 -11.27 16 18 C 0.55 11.83 7.76 86.80 0.67 12.50 16 19 O -0.55 -17.70 15.93 -3.88 -0.06 -17.76 16 20 C -0.04 -0.73 5.92 -19.79 -0.12 -0.85 16 21 C -0.11 -0.71 9.61 22.65 0.22 -0.49 16 22 C 0.17 1.00 11.14 84.82 0.95 1.95 16 23 N -0.47 -6.12 10.35 -193.10 -2.00 -8.11 16 24 C 0.20 3.72 8.56 134.17 1.15 4.87 16 25 N -0.38 -6.07 7.06 -55.48 -0.39 -6.46 16 26 H 0.47 3.31 8.96 -219.83 -1.97 1.34 16 27 N -0.01 -0.31 13.29 37.02 0.49 0.18 16 28 N -0.26 -7.53 11.92 -51.94 -0.62 -8.15 16 29 C -0.03 -0.61 6.97 40.06 0.28 -0.33 16 30 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.17 7.75 -2.39 -0.02 1.15 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.37 15.75 5.53 -92.71 -0.51 15.24 16 42 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.42 2.26 6.75 -92.71 -0.63 1.63 16 44 H 0.20 -0.57 6.53 -2.91 -0.02 -0.59 16 45 H 0.23 -0.98 8.06 -2.91 -0.02 -1.00 16 Total: -1.00 -90.76 379.27 -0.05 -90.81 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -2.11 Total: 12.56 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 6.30 Total: 2.03 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -6.07 Total: -134.10 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.06 Total: -17.76 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.46 kcal Total: -90.76 -0.05 -90.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171757256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.071 kcal (2) G-P(sol) polarization free energy of solvation -90.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds