Wall clock time and date at job start Tue Mar 31 2020 18:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47366 * 2 1 4 4 C 1.52999 * 109.46793 * 240.00446 * 2 1 3 5 5 C 1.53004 * 109.47143 * 175.00147 * 4 2 1 6 6 C 1.52999 * 109.47143 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47143 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47026 * 179.97438 * 7 6 5 9 9 C 1.36943 * 119.99784 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99671 * 0.02562 * 9 8 7 11 11 C 1.38804 * 120.00049 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99763 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00110 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47047 * 59.99724 * 13 11 9 15 15 H 1.48499 * 109.46873 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46534 * 299.99818 * 13 11 9 17 17 N 1.46497 * 109.47294 * 120.00469 * 2 1 3 18 18 C 1.34784 * 119.99734 * 274.99791 * 17 2 1 19 19 O 1.21520 * 120.00115 * 359.97438 * 18 17 2 20 20 C 1.48123 * 119.99642 * 180.02562 * 18 17 2 21 21 N 1.33462 * 125.32811 * 359.96894 * 20 18 17 22 22 C 1.32504 * 109.75849 * 180.02562 * 21 20 18 23 23 N 1.33982 * 132.34685 * 180.29011 * 22 21 20 24 24 C 1.31266 * 120.87783 * 180.25487 * 23 22 21 25 25 C 1.40163 * 120.35648 * 359.42895 * 24 23 22 26 26 C 1.35683 * 119.27623 * 0.28565 * 25 24 23 27 27 N 1.36173 * 119.02163 * 359.97438 * 26 25 24 28 28 N 1.31991 * 125.31963 * 180.02562 * 20 18 17 29 29 H 1.09001 * 109.47547 * 59.99383 * 1 2 3 30 30 H 1.08996 * 109.47613 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47193 * 299.99808 * 1 2 3 32 32 H 1.08999 * 109.47066 * 294.99606 * 4 2 1 33 33 H 1.08997 * 109.47651 * 54.99913 * 4 2 1 34 34 H 1.08999 * 109.46698 * 299.99684 * 5 4 2 35 35 H 1.08997 * 109.47038 * 59.99391 * 5 4 2 36 36 H 1.08999 * 109.47066 * 299.99459 * 6 5 4 37 37 H 1.08997 * 109.47651 * 59.99766 * 6 5 4 38 38 H 1.08999 * 109.46698 * 299.99684 * 7 6 5 39 39 H 1.08997 * 109.47038 * 59.99391 * 7 6 5 40 40 H 0.96997 * 120.00187 * 0.02562 * 8 7 6 41 41 H 0.97007 * 119.99622 * 180.02562 * 12 11 9 42 42 H 0.96998 * 120.00610 * 95.00189 * 17 2 1 43 43 H 1.08002 * 119.81996 * 179.73968 * 24 23 22 44 44 H 1.08008 * 120.36641 * 180.30744 * 25 24 23 45 45 H 1.07998 * 120.49020 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0746 -1.3339 -2.5635 7 6 5.5994 -1.2254 -2.6283 8 7 6.0876 -1.9160 -3.8245 9 6 7.4297 -1.9515 -4.0948 10 1 8.1281 -1.4707 -3.4258 11 6 7.8923 -2.6052 -5.2285 12 7 7.0409 -3.1907 -6.0440 13 14 9.7230 -2.6543 -5.5968 14 1 10.4348 -3.3257 -4.4799 15 1 9.9546 -3.4081 -6.8551 16 1 10.2346 -1.2684 -5.7480 17 7 2.0183 -0.6907 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8585 1.1609 2.4116 20 6 2.6414 -0.7166 3.5663 21 7 2.9881 -2.0040 3.6266 22 6 3.3844 -2.3041 4.8548 23 7 3.8260 -3.4417 5.4080 24 6 4.1609 -3.4884 6.6764 25 6 4.0730 -2.3398 7.4749 26 6 3.6324 -1.1808 6.9240 27 7 3.2873 -1.1647 5.6068 28 7 2.8069 -0.1630 4.7530 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7515 -1.7714 -1.2057 33 1 1.6053 -0.2617 -2.1370 34 1 3.8531 0.4370 -1.3574 35 1 3.9993 -1.0728 -0.4261 36 1 3.7863 -2.3842 -2.5203 37 1 3.6400 -0.8740 -3.4509 38 1 5.8874 -0.1751 -2.6717 39 1 6.0344 -1.6851 -1.7408 40 1 5.4603 -2.3474 -4.4255 41 1 7.3643 -3.6479 -6.8361 42 1 2.2491 -1.6318 1.1525 43 1 4.5108 -4.4156 7.1057 44 1 4.3532 -2.3769 8.5174 45 1 3.5574 -0.2840 7.5211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175794711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:18 Heat of formation + Delta-G solvation = 103.572305 kcal Electronic energy + Delta-G solvation = -26856.040057 eV Core-core repulsion = 22911.400447 eV Total energy + Delta-G solvation = -3944.639610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.46368 -40.27884 -39.05868 -36.99678 -35.27720 -35.14815 -33.28465 -32.21846 -31.45246 -31.16958 -30.22517 -27.40870 -26.34967 -25.00892 -24.18090 -23.70686 -22.13779 -21.06482 -20.74867 -20.59056 -19.14513 -18.72812 -17.79440 -17.24797 -16.95020 -16.66133 -16.36307 -15.28910 -15.16507 -14.97302 -14.67660 -14.38438 -13.97050 -13.88653 -13.57950 -13.30811 -13.29338 -13.11195 -12.92184 -12.88911 -12.59455 -12.36501 -11.72604 -11.44724 -11.23797 -10.98312 -10.87859 -10.76257 -10.66398 -10.64942 -10.54674 -10.39299 -10.35257 -10.22479 -9.96076 -9.61762 -9.45871 -9.33189 -8.79830 -6.84321 -5.69943 -2.98050 -0.26189 0.01336 1.14746 1.32083 2.40124 2.62498 2.78002 3.01868 3.48619 3.52089 3.52140 3.53824 3.64659 3.96191 4.20669 4.46663 4.54736 4.63933 4.68937 4.89084 5.01377 5.09992 5.29138 5.36553 5.39264 5.43857 5.47885 5.54345 5.60313 5.64354 5.73400 5.81114 5.92093 5.98779 6.14540 6.17969 6.37782 6.38230 6.45386 6.54139 6.76095 6.97307 7.00952 7.01558 7.31541 7.75657 7.78241 8.49698 9.60121 10.19930 10.54722 11.53176 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010382 B = 0.002198 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.415603 B =12733.799453 C =14810.119918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.069 0.931 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.692 5.692 18 C 0.612 3.388 19 O -0.508 6.508 20 C 0.242 3.758 21 N -0.497 5.497 22 C 0.444 3.556 23 N -0.447 5.447 24 C 0.210 3.790 25 C -0.217 4.217 26 C 0.172 3.828 27 N -0.328 5.328 28 N -0.268 5.268 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.414 0.586 43 H 0.195 0.805 44 H 0.179 0.821 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.467 2.082 31.196 34.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.112 0.888 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.345 5.345 18 C 0.392 3.608 19 O -0.380 6.380 20 C -0.042 4.042 21 N -0.231 5.231 22 C 0.083 3.917 23 N -0.161 5.161 24 C 0.024 3.976 25 C -0.242 4.242 26 C 0.035 3.965 27 N -0.109 5.109 28 N -0.102 5.102 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.251 0.749 43 H 0.212 0.788 44 H 0.196 0.804 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.761 2.943 30.161 33.282 hybrid contribution 1.110 -0.198 0.446 1.212 sum -12.651 2.745 30.607 33.232 Atomic orbital electron populations 1.22195 0.94856 1.02478 1.02749 1.21226 0.94105 0.97822 0.83109 0.88791 1.21954 0.96986 1.01202 0.96327 1.21549 0.93907 1.01159 0.98875 1.21714 0.97208 1.00363 0.96986 1.20653 0.91089 0.95282 0.90551 1.42382 1.05309 1.64980 1.25196 1.19214 0.83969 1.28335 1.05366 0.91328 1.24747 0.97702 1.01046 0.97743 1.69660 1.32802 1.40834 1.15138 0.86251 0.85181 0.77445 0.77242 1.21308 1.21675 1.21302 1.45879 1.65240 1.15011 1.08405 1.16283 0.78403 0.85328 0.80810 1.90857 1.49075 1.14215 1.83804 1.24239 0.97026 0.88640 0.94325 1.70843 1.23715 1.13242 1.15257 1.22695 0.96403 0.84167 0.88421 1.68132 1.14084 1.20618 1.13258 1.23724 0.87591 0.99301 0.87025 1.22065 1.06105 0.92023 1.04008 1.22268 0.91687 1.01508 0.81017 1.49041 1.41202 1.10886 1.09789 1.78947 1.23603 1.07112 1.00534 0.91041 0.92149 0.92182 0.90975 0.89778 0.91919 0.91992 0.92019 0.92029 0.96603 0.96594 0.78334 0.93530 0.74883 0.78841 0.80401 0.79630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.14 1.46 2.57 -67.93 -0.17 1.28 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 C -0.13 -1.30 4.75 -26.73 -0.13 -1.43 16 5 C -0.12 -1.54 5.10 -26.73 -0.14 -1.67 16 6 C -0.12 -2.08 5.33 -26.73 -0.14 -2.22 16 7 C 0.15 3.26 6.26 -4.04 -0.03 3.24 16 8 N -0.73 -19.76 5.60 -59.91 -0.34 -20.09 16 9 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 10 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 12 N -0.94 -29.22 13.06 55.49 0.72 -28.49 16 13 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 17 N -0.69 -7.80 4.53 -54.66 -0.25 -8.05 16 18 C 0.61 8.32 7.81 -12.20 -0.10 8.22 16 19 O -0.51 -8.10 16.73 5.35 0.09 -8.01 16 20 C 0.24 3.31 7.92 -156.79 -1.24 2.06 16 21 N -0.50 -6.72 10.89 -12.24 -0.13 -6.85 16 22 C 0.44 5.18 8.99 -323.05 -2.90 2.28 16 23 N -0.45 -4.10 10.48 -13.79 -0.14 -4.25 16 24 C 0.21 0.73 11.27 -17.07 -0.19 0.54 16 25 C -0.22 -0.32 10.06 -39.77 -0.40 -0.72 16 26 C 0.17 0.76 11.32 -16.54 -0.19 0.57 16 27 N -0.33 -3.29 3.91 -13.80 -0.05 -3.34 16 28 N -0.27 -3.53 12.78 32.02 0.41 -3.12 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.84 7.75 -51.93 -0.40 0.43 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.38 10.69 7.67 -40.82 -0.31 10.38 16 41 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.41 4.37 8.27 -40.82 -0.34 4.03 16 43 H 0.19 -0.16 8.06 -52.49 -0.42 -0.59 16 44 H 0.18 -0.52 8.06 -52.48 -0.42 -0.94 16 45 H 0.19 0.20 8.06 -52.49 -0.42 -0.23 16 LS Contribution 388.21 15.07 5.85 5.85 Total: -1.00 -39.42 388.21 -10.87 -50.29 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.49 Total: 4.66 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -5.52 Total: 3.28 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: 0.22 Total: -74.19 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.42 -10.87 -50.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175794711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.866 kcal (2) G-P(sol) polarization free energy of solvation -39.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds