Wall clock time and date at job start Tue Mar 31 2020 18:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47366 * 2 1 4 4 C 1.52999 * 109.46793 * 240.00446 * 2 1 3 5 5 C 1.53004 * 109.47143 * 175.00147 * 4 2 1 6 6 C 1.52999 * 109.47143 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47143 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47026 * 179.97438 * 7 6 5 9 9 C 1.36943 * 119.99784 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99671 * 0.02562 * 9 8 7 11 11 C 1.38804 * 120.00049 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99763 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00110 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47047 * 59.99724 * 13 11 9 15 15 H 1.48499 * 109.46873 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46534 * 299.99818 * 13 11 9 17 17 N 1.46497 * 109.47294 * 120.00469 * 2 1 3 18 18 C 1.34784 * 119.99734 * 274.99791 * 17 2 1 19 19 O 1.21520 * 120.00115 * 359.97438 * 18 17 2 20 20 C 1.48123 * 119.99642 * 180.02562 * 18 17 2 21 21 N 1.33462 * 125.32811 * 359.96894 * 20 18 17 22 22 C 1.32504 * 109.75849 * 180.02562 * 21 20 18 23 23 N 1.33982 * 132.34685 * 180.29011 * 22 21 20 24 24 C 1.31266 * 120.87783 * 180.25487 * 23 22 21 25 25 C 1.40163 * 120.35648 * 359.42895 * 24 23 22 26 26 C 1.35683 * 119.27623 * 0.28565 * 25 24 23 27 27 N 1.36173 * 119.02163 * 359.97438 * 26 25 24 28 28 N 1.31991 * 125.31963 * 180.02562 * 20 18 17 29 29 H 1.09001 * 109.47547 * 59.99383 * 1 2 3 30 30 H 1.08996 * 109.47613 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47193 * 299.99808 * 1 2 3 32 32 H 1.08999 * 109.47066 * 294.99606 * 4 2 1 33 33 H 1.08997 * 109.47651 * 54.99913 * 4 2 1 34 34 H 1.08999 * 109.46698 * 299.99684 * 5 4 2 35 35 H 1.08997 * 109.47038 * 59.99391 * 5 4 2 36 36 H 1.08999 * 109.47066 * 299.99459 * 6 5 4 37 37 H 1.08997 * 109.47651 * 59.99766 * 6 5 4 38 38 H 1.08999 * 109.46698 * 299.99684 * 7 6 5 39 39 H 1.08997 * 109.47038 * 59.99391 * 7 6 5 40 40 H 0.96997 * 120.00187 * 0.02562 * 8 7 6 41 41 H 0.97007 * 119.99622 * 180.02562 * 12 11 9 42 42 H 0.96998 * 120.00610 * 95.00189 * 17 2 1 43 43 H 1.08002 * 119.81996 * 179.73968 * 24 23 22 44 44 H 1.08008 * 120.36641 * 180.30744 * 25 24 23 45 45 H 1.07998 * 120.49020 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0746 -1.3339 -2.5635 7 6 5.5994 -1.2254 -2.6283 8 7 6.0876 -1.9160 -3.8245 9 6 7.4297 -1.9515 -4.0948 10 1 8.1281 -1.4707 -3.4258 11 6 7.8923 -2.6052 -5.2285 12 7 7.0409 -3.1907 -6.0440 13 14 9.7230 -2.6543 -5.5968 14 1 10.4348 -3.3257 -4.4799 15 1 9.9546 -3.4081 -6.8551 16 1 10.2346 -1.2684 -5.7480 17 7 2.0183 -0.6907 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8585 1.1609 2.4116 20 6 2.6414 -0.7166 3.5663 21 7 2.9881 -2.0040 3.6266 22 6 3.3844 -2.3041 4.8548 23 7 3.8260 -3.4417 5.4080 24 6 4.1609 -3.4884 6.6764 25 6 4.0730 -2.3398 7.4749 26 6 3.6324 -1.1808 6.9240 27 7 3.2873 -1.1647 5.6068 28 7 2.8069 -0.1630 4.7530 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7515 -1.7714 -1.2057 33 1 1.6053 -0.2617 -2.1370 34 1 3.8531 0.4370 -1.3574 35 1 3.9993 -1.0728 -0.4261 36 1 3.7863 -2.3842 -2.5203 37 1 3.6400 -0.8740 -3.4509 38 1 5.8874 -0.1751 -2.6717 39 1 6.0344 -1.6851 -1.7408 40 1 5.4603 -2.3474 -4.4255 41 1 7.3643 -3.6479 -6.8361 42 1 2.2491 -1.6318 1.1525 43 1 4.5108 -4.4156 7.1057 44 1 4.3532 -2.3769 8.5174 45 1 3.5574 -0.2840 7.5211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175794711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:17 Heat of formation + Delta-G solvation = 76.530085 kcal Electronic energy + Delta-G solvation = -26857.212696 eV Core-core repulsion = 22911.400447 eV Total energy + Delta-G solvation = -3945.812249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.13576 -41.17979 -39.68642 -38.11074 -36.90039 -35.76505 -34.84338 -33.23844 -32.50955 -31.99025 -31.53577 -28.83700 -27.04675 -25.94887 -25.49995 -24.44900 -23.64470 -22.12907 -21.95651 -21.63531 -19.79971 -19.33617 -19.12962 -18.48256 -17.97514 -17.45936 -16.90392 -16.69567 -16.34072 -16.14888 -15.55392 -15.44609 -15.30104 -15.27622 -14.63163 -14.29460 -14.25171 -14.13407 -13.91331 -13.86800 -13.33407 -13.21939 -13.06729 -12.89977 -12.84584 -12.46327 -12.33387 -12.20941 -11.90181 -11.85280 -11.75218 -11.64071 -11.44569 -11.41921 -11.09627 -10.99343 -10.94419 -10.29002 -10.07544 -9.02956 -7.97306 -5.27004 -0.73895 -0.53027 0.55827 0.56450 1.44965 1.49092 1.55415 1.61093 1.89787 2.15062 2.31458 2.54490 2.87237 3.23422 3.35309 3.46053 3.57808 3.93821 3.98731 4.03882 4.12188 4.22202 4.32388 4.35012 4.37673 4.47274 4.58649 4.63593 4.71884 4.77573 4.85855 4.90736 4.94571 4.97005 4.99235 5.05305 5.19987 5.25894 5.30190 5.34753 5.44011 5.49767 5.51817 6.07436 6.25403 6.27515 6.55283 6.83386 7.30847 8.07049 8.31572 9.26098 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010382 B = 0.002198 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.415603 B =12733.799453 C =14810.119918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.082 0.918 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.111 4.111 7 C 0.148 3.852 8 N -0.748 5.748 9 C -0.253 4.253 10 H 0.071 0.929 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.978 3.022 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.682 5.682 18 C 0.612 3.388 19 O -0.542 6.542 20 C 0.224 3.776 21 N -0.530 5.530 22 C 0.424 3.576 23 N -0.489 5.489 24 C 0.219 3.781 25 C -0.175 4.175 26 C 0.141 3.859 27 N -0.330 5.330 28 N -0.300 5.300 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.014 0.986 39 H 0.012 0.988 40 H 0.375 0.625 41 H 0.253 0.747 42 H 0.418 0.582 43 H 0.242 0.758 44 H 0.237 0.763 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.814 1.259 33.890 36.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.100 0.900 4 C -0.154 4.154 5 C -0.147 4.147 6 C -0.149 4.149 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.385 4.385 10 H 0.089 0.911 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.806 3.194 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.203 1.203 17 N -0.334 5.334 18 C 0.392 3.608 19 O -0.417 6.417 20 C -0.060 4.060 21 N -0.266 5.266 22 C 0.064 3.936 23 N -0.206 5.206 24 C 0.036 3.964 25 C -0.199 4.199 26 C 0.007 3.993 27 N -0.111 5.111 28 N -0.135 5.135 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.032 0.968 39 H 0.030 0.970 40 H 0.207 0.793 41 H 0.062 0.938 42 H 0.255 0.745 43 H 0.258 0.742 44 H 0.254 0.746 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -13.096 2.105 32.936 35.506 hybrid contribution 0.992 -0.056 -0.100 0.998 sum -12.104 2.050 32.836 35.056 Atomic orbital electron populations 1.22142 0.93434 1.03162 1.02884 1.21271 0.95151 0.97085 0.82645 0.90005 1.21871 0.94581 1.02122 0.96791 1.21454 0.96026 1.00404 0.96783 1.21585 0.93647 1.00929 0.98742 1.20848 0.94388 0.94292 0.88339 1.42611 1.04566 1.65401 1.26535 1.19616 0.85325 1.28027 1.05510 0.91060 1.25639 1.02457 1.01077 0.97724 1.69818 1.34801 1.41774 1.15532 0.85157 0.79597 0.77703 0.76980 1.20351 1.21658 1.20329 1.45904 1.64343 1.15061 1.08122 1.16412 0.78000 0.85003 0.81391 1.90814 1.50898 1.15491 1.84460 1.24089 0.98335 0.89073 0.94505 1.70684 1.25330 1.13312 1.17275 1.22882 0.96905 0.85317 0.88463 1.68248 1.16431 1.19787 1.16094 1.24776 0.84430 1.01844 0.85338 1.22795 1.01647 0.89589 1.05865 1.23263 0.92438 1.04282 0.79309 1.49093 1.41142 1.09666 1.11191 1.78740 1.24922 1.08925 1.00954 0.89314 0.91168 0.93609 0.89835 0.88204 0.92082 0.92533 0.92006 0.91801 0.96763 0.97010 0.79326 0.93821 0.74455 0.74154 0.74638 0.76615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.48 71.98 0.68 -2.07 16 2 C 0.14 2.92 2.57 44.99 0.12 3.04 16 3 H 0.08 1.93 7.58 -2.38 -0.02 1.91 16 4 C -0.12 -2.26 4.75 30.60 0.15 -2.11 16 5 C -0.11 -2.82 5.10 30.60 0.16 -2.66 16 6 C -0.11 -3.66 5.33 30.60 0.16 -3.50 16 7 C 0.15 6.42 6.26 86.38 0.54 6.96 16 8 N -0.75 -40.80 5.60 -343.45 -1.92 -42.73 16 9 C -0.25 -15.02 9.99 84.03 0.84 -14.18 16 10 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 11 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 12 N -0.97 -61.14 13.06 21.65 0.28 -60.85 16 13 Si 0.98 47.65 29.55 68.60 2.03 49.68 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 15 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 N -0.68 -16.09 4.53 -445.14 -2.02 -18.10 16 18 C 0.61 17.85 7.81 86.87 0.68 18.53 16 19 O -0.54 -18.50 16.73 -3.78 -0.06 -18.57 16 20 C 0.22 6.61 7.92 137.40 1.09 7.69 16 21 N -0.53 -15.32 10.89 -192.63 -2.10 -17.42 16 22 C 0.42 10.17 8.99 261.57 2.35 12.52 16 23 N -0.49 -8.52 10.48 -197.54 -2.07 -10.59 16 24 C 0.22 0.74 11.27 85.25 0.96 1.71 16 25 C -0.18 0.29 10.06 22.15 0.22 0.51 16 26 C 0.14 0.92 11.32 83.43 0.94 1.86 16 27 N -0.33 -6.64 3.91 -197.58 -0.77 -7.42 16 28 N -0.30 -8.39 12.78 -52.61 -0.67 -9.07 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.54 7.75 -2.39 -0.02 1.52 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.37 21.31 7.67 -92.71 -0.71 20.60 16 41 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 42 H 0.42 9.24 8.27 -92.71 -0.77 8.48 16 43 H 0.24 -1.70 8.06 -2.91 -0.02 -1.72 16 44 H 0.24 -3.11 8.06 -2.91 -0.02 -3.14 16 45 H 0.22 -0.14 8.06 -2.91 -0.02 -0.17 16 Total: -1.00 -91.16 388.21 1.60 -89.56 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -0.45 Total: 21.34 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 9.35 Total: 24.16 kcal Atomic # 7 Polarization: -156.90 SS G_CDS: -9.27 Total: -166.17 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.06 Total: -18.57 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -91.16 1.60 -89.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175794711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.094 kcal (2) G-P(sol) polarization free energy of solvation -91.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds