Wall clock time and date at job start Tue Mar 31 2020 17:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99628 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99485 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99826 * 3 2 1 7 7 C 1.38817 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46959 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47271 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47510 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21563 * 120.00283 * 359.72077 * 17 16 15 19 19 C 1.47725 * 119.99905 * 179.72379 * 17 16 15 20 20 C 1.40126 * 120.34652 * 0.02562 * 19 17 16 21 21 N 1.31262 * 121.14420 * 179.97438 * 20 19 17 22 22 C 1.32714 * 121.80224 * 0.02562 * 21 20 19 23 23 N 1.37116 * 133.40652 * 180.02562 * 22 21 20 24 24 H 0.97005 * 126.59238 * 0.02562 * 23 22 21 25 25 N 1.40188 * 106.82317 * 179.97438 * 23 22 21 26 26 N 1.28671 * 109.50837 * 359.97438 * 25 23 22 27 27 C 1.35332 * 109.99831 * 0.02562 * 26 25 23 28 28 C 1.39423 * 120.35347 * 179.72343 * 19 17 16 29 29 H 0.96996 * 120.00448 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99863 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.46952 * 60.00050 * 10 9 7 32 32 H 1.08998 * 109.47023 * 300.00119 * 10 9 7 33 33 H 1.09000 * 109.47439 * 59.99896 * 11 10 9 34 34 H 1.08998 * 109.47408 * 299.99954 * 11 10 9 35 35 H 1.09008 * 109.46645 * 60.00006 * 12 11 10 36 36 H 1.08998 * 109.47049 * 300.00396 * 12 11 10 37 37 H 1.08995 * 109.46638 * 60.00101 * 13 12 11 38 38 H 1.09007 * 109.46700 * 300.00274 * 13 12 11 39 39 H 1.08995 * 109.47672 * 60.00331 * 14 13 12 40 40 H 1.09006 * 109.46819 * 299.99760 * 14 13 12 41 41 H 1.09009 * 109.46730 * 59.99606 * 15 14 13 42 42 H 1.08998 * 109.46846 * 300.00150 * 15 14 13 43 43 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 44 44 H 1.07999 * 119.42588 * 359.97438 * 20 19 17 45 45 H 1.07997 * 120.95244 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.8290 -6.1447 0.0005 13 6 0.8348 -7.3077 0.0005 14 6 1.5999 -8.6326 0.0005 15 6 0.6057 -9.7956 -0.0001 16 7 1.3382 -11.0643 -0.0007 17 6 0.6643 -12.2315 -0.0070 18 8 -0.5513 -12.2316 -0.0071 19 6 1.4030 -13.5108 -0.0138 20 6 2.8042 -13.5193 -0.0132 21 7 3.4763 -14.6468 -0.0187 22 6 2.8656 -15.8250 -0.0255 23 7 3.3164 -17.1199 -0.0316 24 1 4.2420 -17.4100 -0.0316 25 7 2.1825 -17.9442 -0.0367 26 7 1.1217 -17.2159 -0.0334 27 6 1.4600 -15.9056 -0.0267 28 6 0.7134 -14.7225 -0.0146 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7144 0.8905 32 1 2.6848 -3.7144 -0.8894 33 1 0.4369 -4.7622 -0.8885 34 1 0.4377 -4.7618 0.8914 35 1 2.4563 -6.2024 0.8902 36 1 2.4550 -6.2023 -0.8899 37 1 0.2079 -7.2497 -0.8892 38 1 0.2084 -7.2502 0.8908 39 1 2.2265 -8.6904 0.8905 40 1 2.2265 -8.6903 -0.8895 41 1 -0.0207 -9.7376 -0.8904 42 1 -0.0213 -9.7381 0.8896 43 1 2.3082 -11.0642 -0.0011 44 1 3.3405 -12.5818 -0.0081 45 1 -0.3663 -14.7472 -0.0098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178705584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:20 Heat of formation + Delta-G solvation = 79.284658 kcal Electronic energy + Delta-G solvation = -25499.629986 eV Core-core repulsion = 21553.937184 eV Total energy + Delta-G solvation = -3945.692802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.08681 -40.59134 -38.87098 -36.92970 -35.54994 -34.71047 -34.08096 -32.46965 -32.17645 -31.29874 -29.91129 -27.21637 -25.60266 -25.10497 -23.86629 -23.39948 -22.33730 -21.67479 -20.94305 -20.68372 -19.43325 -19.10909 -17.72439 -17.18063 -16.97249 -16.84714 -16.33842 -16.03970 -15.42725 -14.83473 -14.64037 -14.43815 -14.35587 -14.01145 -13.72355 -13.50290 -13.42427 -13.22745 -13.01055 -12.76334 -12.66761 -12.39912 -12.24533 -11.78215 -11.41495 -11.23854 -10.94544 -10.89479 -10.75545 -10.71553 -10.42477 -10.27772 -10.23683 -10.08727 -9.96797 -9.85964 -9.64507 -9.53208 -8.84633 -6.89024 -5.74243 -3.02670 -0.52937 -0.12567 1.28077 1.34490 2.14460 2.44837 2.96438 3.10527 3.44725 3.47746 3.49472 3.51519 3.52698 3.83554 3.91132 4.21814 4.45459 4.56614 4.63269 4.68567 4.87407 4.96408 5.03785 5.18404 5.30165 5.33842 5.36703 5.53016 5.61126 5.63910 5.66979 5.87616 5.92402 5.92890 5.95908 6.10595 6.31703 6.32720 6.40723 6.47510 6.69851 6.89218 6.91115 6.95119 7.04365 7.60832 7.71745 8.45139 9.55831 10.15485 10.49858 11.48898 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.047236 B = 0.001211 C = 0.001183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.623648 B =23112.194782 C =23663.117092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.117 4.117 14 C -0.132 4.132 15 C 0.117 3.883 16 N -0.722 5.722 17 C 0.569 3.431 18 O -0.527 6.527 19 C -0.208 4.208 20 C 0.214 3.786 21 N -0.486 5.486 22 C 0.295 3.705 23 N -0.481 5.481 24 H 0.456 0.544 25 N 0.023 4.977 26 N -0.189 5.189 27 C -0.074 4.074 28 C 0.087 3.913 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.400 0.600 44 H 0.180 0.820 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.105 -36.320 0.004 37.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.024 3.976 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.170 4.170 15 C -0.006 4.006 16 N -0.374 5.374 17 C 0.354 3.646 18 O -0.403 6.403 19 C -0.217 4.217 20 C 0.040 3.960 21 N -0.200 5.200 22 C 0.049 3.951 23 N -0.206 5.206 24 H 0.304 0.696 25 N 0.039 4.961 26 N -0.071 5.071 27 C -0.199 4.199 28 C 0.056 3.944 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.235 0.765 44 H 0.196 0.804 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.701 -37.721 0.009 38.311 hybrid contribution 0.885 1.684 -0.012 1.903 sum 7.586 -36.037 -0.003 36.826 Atomic orbital electron populations 1.69658 1.05130 1.25613 1.57932 1.24745 0.95525 0.97692 1.03131 0.86187 0.78641 0.83848 0.77516 1.21729 1.21748 1.20774 1.19258 0.91046 0.84299 1.42496 0.91227 1.42394 1.05906 1.00158 1.89468 1.20656 0.93659 0.85732 0.97518 1.21730 0.98894 0.93843 1.02018 1.21501 0.97862 0.93869 1.01911 1.21518 0.98449 0.92764 1.02735 1.21848 0.98253 0.93984 1.02911 1.21547 0.94975 0.80951 1.03112 1.45922 1.10419 1.05867 1.75224 1.17677 0.87072 0.82974 0.76890 1.90845 1.13043 1.87244 1.49218 1.20760 0.94948 0.94613 1.11403 1.23079 0.90035 0.95258 0.87624 1.66687 1.39926 0.95418 1.17987 1.19601 0.90611 0.87554 0.97288 1.47594 1.11299 1.01912 1.59834 0.69595 1.81795 0.85899 1.14046 1.14314 1.74942 1.20022 1.01250 1.10865 1.20418 0.92602 0.93128 1.13802 1.21115 1.01906 0.87028 0.84354 0.93534 0.78333 0.96607 0.96604 0.92083 0.92073 0.92079 0.92085 0.91546 0.91551 0.91113 0.91127 0.90863 0.90847 0.76490 0.80374 0.81423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.74 -19.11 5.60 -59.92 -0.34 -19.45 16 10 C 0.15 3.07 6.26 -4.04 -0.03 3.05 16 11 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 12 C -0.11 -1.27 5.21 -26.73 -0.14 -1.41 16 13 C -0.12 -1.02 5.21 -26.73 -0.14 -1.16 16 14 C -0.13 -0.80 5.33 -26.73 -0.14 -0.94 16 15 C 0.12 0.77 5.67 -4.04 -0.02 0.74 16 16 N -0.72 -3.74 5.51 -61.29 -0.34 -4.07 16 17 C 0.57 4.21 7.77 -12.38 -0.10 4.12 16 18 O -0.53 -6.00 16.39 5.31 0.09 -5.92 16 19 C -0.21 -1.20 5.88 -104.87 -0.62 -1.82 16 20 C 0.21 0.89 10.69 -17.09 -0.18 0.71 16 21 N -0.49 -2.92 10.37 -12.03 -0.12 -3.05 16 22 C 0.29 2.01 8.49 -155.93 -1.32 0.69 16 23 N -0.48 -2.58 7.52 31.15 0.23 -2.34 16 24 H 0.46 0.87 8.96 -182.53 -1.64 -0.77 16 25 N 0.02 0.17 13.82 60.35 0.83 1.01 16 26 N -0.19 -1.66 12.40 32.17 0.40 -1.26 16 27 C -0.07 -0.57 7.27 -84.74 -0.62 -1.19 16 28 C 0.09 0.58 9.75 -38.52 -0.38 0.21 16 29 H 0.25 7.52 8.31 -40.82 -0.34 7.19 16 30 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.40 0.80 6.51 -40.82 -0.27 0.54 16 44 H 0.18 0.07 6.39 -52.49 -0.34 -0.26 16 45 H 0.17 1.04 7.71 -52.49 -0.40 0.64 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -36.11 385.02 -9.38 -45.49 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.57 Total: 0.84 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -4.07 Total: -6.66 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 1.39 Total: -57.08 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: 0.09 Total: -5.92 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.11 -9.38 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178705584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.777 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds