Wall clock time and date at job start Tue Mar 31 2020 17:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99628 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99485 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99826 * 3 2 1 7 7 C 1.38817 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46959 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47271 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47510 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21563 * 120.00283 * 359.72077 * 17 16 15 19 19 C 1.47725 * 119.99905 * 179.72379 * 17 16 15 20 20 C 1.40126 * 120.34652 * 0.02562 * 19 17 16 21 21 N 1.31262 * 121.14420 * 179.97438 * 20 19 17 22 22 C 1.32714 * 121.80224 * 0.02562 * 21 20 19 23 23 N 1.37116 * 133.40652 * 180.02562 * 22 21 20 24 24 H 0.97005 * 126.59238 * 0.02562 * 23 22 21 25 25 N 1.40188 * 106.82317 * 179.97438 * 23 22 21 26 26 N 1.28671 * 109.50837 * 359.97438 * 25 23 22 27 27 C 1.35332 * 109.99831 * 0.02562 * 26 25 23 28 28 C 1.39423 * 120.35347 * 179.72343 * 19 17 16 29 29 H 0.96996 * 120.00448 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99863 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.46952 * 60.00050 * 10 9 7 32 32 H 1.08998 * 109.47023 * 300.00119 * 10 9 7 33 33 H 1.09000 * 109.47439 * 59.99896 * 11 10 9 34 34 H 1.08998 * 109.47408 * 299.99954 * 11 10 9 35 35 H 1.09008 * 109.46645 * 60.00006 * 12 11 10 36 36 H 1.08998 * 109.47049 * 300.00396 * 12 11 10 37 37 H 1.08995 * 109.46638 * 60.00101 * 13 12 11 38 38 H 1.09007 * 109.46700 * 300.00274 * 13 12 11 39 39 H 1.08995 * 109.47672 * 60.00331 * 14 13 12 40 40 H 1.09006 * 109.46819 * 299.99760 * 14 13 12 41 41 H 1.09009 * 109.46730 * 59.99606 * 15 14 13 42 42 H 1.08998 * 109.46846 * 300.00150 * 15 14 13 43 43 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 44 44 H 1.07999 * 119.42588 * 359.97438 * 20 19 17 45 45 H 1.07997 * 120.95244 * 359.97438 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.8290 -6.1447 0.0005 13 6 0.8348 -7.3077 0.0005 14 6 1.5999 -8.6326 0.0005 15 6 0.6057 -9.7956 -0.0001 16 7 1.3382 -11.0643 -0.0007 17 6 0.6643 -12.2315 -0.0070 18 8 -0.5513 -12.2316 -0.0071 19 6 1.4030 -13.5108 -0.0138 20 6 2.8042 -13.5193 -0.0132 21 7 3.4763 -14.6468 -0.0187 22 6 2.8656 -15.8250 -0.0255 23 7 3.3164 -17.1199 -0.0316 24 1 4.2420 -17.4100 -0.0316 25 7 2.1825 -17.9442 -0.0367 26 7 1.1217 -17.2159 -0.0334 27 6 1.4600 -15.9056 -0.0267 28 6 0.7134 -14.7225 -0.0146 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7144 0.8905 32 1 2.6848 -3.7144 -0.8894 33 1 0.4369 -4.7622 -0.8885 34 1 0.4377 -4.7618 0.8914 35 1 2.4563 -6.2024 0.8902 36 1 2.4550 -6.2023 -0.8899 37 1 0.2079 -7.2497 -0.8892 38 1 0.2084 -7.2502 0.8908 39 1 2.2265 -8.6904 0.8905 40 1 2.2265 -8.6903 -0.8895 41 1 -0.0207 -9.7376 -0.8904 42 1 -0.0213 -9.7381 0.8896 43 1 2.3082 -11.0642 -0.0011 44 1 3.3405 -12.5818 -0.0081 45 1 -0.3663 -14.7472 -0.0098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178705584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:17 Heat of formation + Delta-G solvation = 52.548294 kcal Electronic energy + Delta-G solvation = -25500.789361 eV Core-core repulsion = 21553.937184 eV Total energy + Delta-G solvation = -3946.852177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.58144 -41.14957 -39.37627 -37.86559 -36.76167 -35.34848 -35.21160 -33.58319 -32.92309 -32.19143 -31.14807 -28.36326 -26.35485 -25.82528 -25.14096 -23.90843 -23.54119 -22.28535 -22.04178 -21.63519 -19.89884 -19.64062 -19.09192 -18.14386 -17.69300 -17.35461 -16.98970 -16.72029 -16.53106 -16.27457 -15.38332 -15.34405 -15.34226 -15.13193 -14.86101 -14.42269 -14.30023 -13.95639 -13.85820 -13.75481 -13.37198 -13.17961 -13.01479 -12.92737 -12.74772 -12.59644 -12.33182 -12.15005 -11.98266 -11.74882 -11.74489 -11.59196 -11.27753 -11.27075 -10.91557 -10.75845 -10.57561 -10.39531 -10.03542 -8.99506 -7.94967 -5.24280 -1.00452 -0.60295 0.83043 0.86734 1.48031 1.50308 1.58874 1.60322 1.93326 2.47653 2.57064 2.67374 3.01952 3.04595 3.38729 3.38922 3.53269 3.73574 3.79519 4.05215 4.10296 4.13287 4.32049 4.34576 4.40414 4.48102 4.63002 4.66701 4.71500 4.84961 4.90259 4.94282 5.03836 5.05020 5.13341 5.23373 5.35895 5.36351 5.45111 5.51119 5.59960 5.62468 5.63267 6.26199 6.27923 6.45635 6.54045 7.11770 7.33371 8.11221 8.33505 9.28925 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.047236 B = 0.001211 C = 0.001183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.623648 B =23112.194782 C =23663.117092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.752 5.752 10 C 0.147 3.853 11 C -0.118 4.118 12 C -0.104 4.104 13 C -0.115 4.115 14 C -0.119 4.119 15 C 0.120 3.880 16 N -0.705 5.705 17 C 0.571 3.429 18 O -0.573 6.573 19 C -0.203 4.203 20 C 0.229 3.771 21 N -0.491 5.491 22 C 0.289 3.711 23 N -0.464 5.464 24 H 0.469 0.531 25 N 0.010 4.990 26 N -0.215 5.215 27 C -0.090 4.090 28 C 0.080 3.920 29 H 0.252 0.748 30 H 0.372 0.628 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.418 0.582 44 H 0.221 0.779 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.744 -36.482 0.018 37.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.021 3.979 11 C -0.156 4.156 12 C -0.142 4.142 13 C -0.153 4.153 14 C -0.157 4.157 15 C -0.004 4.004 16 N -0.358 5.358 17 C 0.357 3.643 18 O -0.453 6.453 19 C -0.212 4.212 20 C 0.055 3.945 21 N -0.205 5.205 22 C 0.044 3.956 23 N -0.192 5.192 24 H 0.321 0.679 25 N 0.027 4.973 26 N -0.095 5.095 27 C -0.216 4.216 28 C 0.049 3.951 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.257 0.743 44 H 0.238 0.762 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.430 -37.934 0.022 39.089 hybrid contribution 0.104 1.738 -0.017 1.741 sum 9.534 -36.197 0.005 37.431 Atomic orbital electron populations 1.69821 1.06735 1.26155 1.59514 1.25618 0.96431 1.01273 1.03582 0.85105 0.77725 0.79203 0.77529 1.21264 1.22080 1.19266 1.19699 0.91596 0.85544 1.41362 0.90586 1.42679 1.05693 1.01589 1.89458 1.20895 0.94478 0.85069 0.97457 1.21652 0.98082 0.94541 1.01306 1.21425 0.97972 0.91993 1.02789 1.21455 0.98078 0.93345 1.02423 1.21718 0.97797 0.91768 1.04432 1.21426 0.95150 0.81682 1.02126 1.45743 1.11336 1.04790 1.73881 1.17852 0.86533 0.83787 0.76137 1.90832 1.15099 1.87846 1.51503 1.20651 0.95620 0.93378 1.11594 1.23706 0.89321 0.96190 0.85243 1.66844 1.39763 0.95357 1.18580 1.19773 0.90368 0.88215 0.97262 1.47570 1.11643 1.01381 1.58595 0.67893 1.81725 0.86329 1.14408 1.14843 1.74909 1.20756 1.01973 1.11902 1.20572 0.93346 0.92991 1.14701 1.21180 1.01980 0.87384 0.84554 0.93960 0.79607 0.96281 0.96270 0.92837 0.92822 0.91171 0.91181 0.91990 0.91989 0.89566 0.89582 0.91994 0.91971 0.74290 0.76246 0.81832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -39.21 5.60 -343.47 -1.92 -41.13 16 10 C 0.15 5.82 6.26 86.38 0.54 6.36 16 11 C -0.12 -3.56 5.33 30.59 0.16 -3.39 16 12 C -0.10 -2.06 5.21 30.60 0.16 -1.90 16 13 C -0.11 -1.75 5.21 30.59 0.16 -1.59 16 14 C -0.12 -1.04 5.33 30.59 0.16 -0.88 16 15 C 0.12 1.33 5.67 86.38 0.49 1.82 16 16 N -0.71 -5.40 5.51 -466.08 -2.57 -7.96 16 17 C 0.57 7.68 7.77 86.75 0.67 8.36 16 18 O -0.57 -13.07 16.39 -3.91 -0.06 -13.14 16 19 C -0.20 -2.04 5.88 -20.03 -0.12 -2.16 16 20 C 0.23 1.23 10.69 85.24 0.91 2.14 16 21 N -0.49 -4.74 10.37 -191.98 -1.99 -6.73 16 22 C 0.29 3.62 8.49 134.01 1.14 4.76 16 23 N -0.46 -4.58 7.52 -55.37 -0.42 -5.00 16 24 H 0.47 1.22 8.96 -213.26 -1.91 -0.69 16 25 N 0.01 0.15 13.82 37.02 0.51 0.66 16 26 N -0.21 -3.86 12.40 -52.14 -0.65 -4.51 16 27 C -0.09 -1.38 7.27 39.63 0.29 -1.09 16 28 C 0.08 1.07 9.75 22.96 0.22 1.29 16 29 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.37 20.63 7.67 -92.71 -0.71 19.92 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.42 -0.07 6.51 -92.71 -0.60 -0.67 16 44 H 0.22 -0.88 6.39 -2.91 -0.02 -0.89 16 45 H 0.16 2.22 7.71 -2.91 -0.02 2.19 16 Total: -1.00 -79.08 385.02 -0.86 -79.94 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -2.17 Total: 13.33 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 6.10 Total: -3.71 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -6.75 Total: -124.64 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.06 Total: -13.14 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -79.08 -0.86 -79.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178705584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.488 kcal (2) G-P(sol) polarization free energy of solvation -79.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds