Wall clock time and date at job start Tue Mar 31 2020 17:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00073 * 2 1 4 4 H 1.48500 * 109.47383 * 270.00672 * 3 2 1 5 5 H 1.48510 * 109.46967 * 30.00544 * 3 2 1 6 6 H 1.48496 * 109.47221 * 150.00210 * 3 2 1 7 7 C 1.38807 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00472 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00514 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47577 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47264 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47202 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47530 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47530 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47326 * 179.97438 * 15 14 13 17 17 C 1.34774 * 119.99868 * 179.97438 * 16 15 14 18 18 O 1.21572 * 120.00583 * 0.02562 * 17 16 15 19 19 C 1.47693 * 120.00016 * 180.02562 * 17 16 15 20 20 C 1.41603 * 120.03147 * 0.02562 * 19 17 16 21 21 C 1.35775 * 119.54841 * 180.29857 * 20 19 17 22 22 C 1.40866 * 119.39313 * 359.48308 * 21 20 19 23 23 N 1.32481 * 133.42217 * 180.19457 * 22 21 20 24 24 N 1.28528 * 110.24848 * 180.29340 * 23 22 21 25 25 N 1.28988 * 110.83997 * 359.97438 * 24 23 22 26 26 N 1.36931 * 119.92891 * 0.51921 * 22 21 20 27 27 C 1.35500 * 120.84255 * 359.73056 * 26 22 21 28 28 H 0.97007 * 120.00215 * 359.97438 * 1 2 3 29 29 H 0.97011 * 119.99785 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47532 * 59.99382 * 10 9 7 31 31 H 1.08995 * 109.47190 * 299.99649 * 10 9 7 32 32 H 1.09000 * 109.46785 * 59.99906 * 11 10 9 33 33 H 1.09003 * 109.46837 * 299.99995 * 11 10 9 34 34 H 1.09005 * 109.47571 * 60.00054 * 12 11 10 35 35 H 1.09003 * 109.47307 * 299.99851 * 12 11 10 36 36 H 1.09002 * 109.47317 * 60.00152 * 13 12 11 37 37 H 1.08998 * 109.47523 * 300.00327 * 13 12 11 38 38 H 1.09005 * 109.47405 * 59.99958 * 14 13 12 39 39 H 1.09003 * 109.47146 * 299.99955 * 14 13 12 40 40 H 1.09002 * 109.47317 * 60.00154 * 15 14 13 41 41 H 1.08998 * 109.47523 * 300.00330 * 15 14 13 42 42 H 0.96998 * 120.00097 * 0.02562 * 16 15 14 43 43 H 1.08002 * 120.22180 * 0.02562 * 20 19 17 44 44 H 1.08001 * 120.30671 * 179.72104 * 21 20 19 45 45 H 1.08000 * 119.82059 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.8288 -6.1446 -0.0005 13 6 0.8346 -7.3076 0.0008 14 6 1.5996 -8.6326 -0.0005 15 6 0.6054 -9.7955 0.0014 16 7 1.3379 -11.0643 -0.0005 17 6 0.6640 -12.2314 0.0013 18 8 -0.5517 -12.2315 0.0040 19 6 1.4024 -13.5105 0.0000 20 6 2.8185 -13.5113 -0.0025 21 6 3.4874 -14.6928 -0.0099 22 6 2.7600 -15.8992 -0.0037 23 7 3.1138 -17.1759 -0.0048 24 7 2.0705 -17.9265 -0.0032 25 7 0.9939 -17.2160 -0.0005 26 7 1.3910 -15.8714 -0.0013 27 6 0.7200 -14.6942 0.0008 28 1 -0.4851 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 2.6848 -3.7145 0.8894 31 1 2.6846 -3.7145 -0.8905 32 1 0.4368 -4.7621 -0.8897 33 1 0.4375 -4.7618 0.8904 34 1 2.4562 -6.2025 0.8890 35 1 2.4548 -6.2024 -0.8910 36 1 0.2070 -7.2500 -0.8886 37 1 0.2089 -7.2497 0.8914 38 1 2.2276 -8.6905 0.8885 39 1 2.2250 -8.6902 -0.8915 40 1 -0.0229 -9.7379 -0.8875 41 1 -0.0197 -9.7378 0.8925 42 1 2.3079 -11.0643 -0.0022 43 1 3.3626 -12.5784 -0.0031 44 1 4.5673 -14.7077 -0.0164 45 1 -0.3600 -14.6916 0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179009986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:26 Heat of formation + Delta-G solvation = 105.239026 kcal Electronic energy + Delta-G solvation = -25570.153985 eV Core-core repulsion = 21625.586649 eV Total energy + Delta-G solvation = -3944.567336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -44.13073 -40.90148 -38.91108 -37.02537 -35.69335 -34.93992 -34.11286 -33.01634 -31.91033 -31.31582 -30.08310 -27.48415 -25.98552 -25.18274 -24.10817 -23.55019 -22.46103 -21.96280 -21.08955 -20.73439 -19.57979 -18.29603 -18.25496 -17.61104 -17.01027 -16.56122 -16.48589 -15.85051 -15.58037 -15.37192 -14.67598 -14.54673 -14.41711 -14.32618 -13.69696 -13.56242 -13.47331 -13.20174 -13.07307 -12.84986 -12.62464 -12.46987 -12.42302 -11.87726 -11.76422 -11.49253 -11.28744 -11.00443 -10.94838 -10.88844 -10.79484 -10.74587 -10.43417 -10.32778 -10.00179 -9.77679 -9.67526 -9.43756 -8.87338 -6.91911 -5.76866 -3.05445 -0.66751 -0.35241 0.84615 1.22637 1.89626 2.33702 2.56943 2.85874 3.29553 3.42725 3.47546 3.49537 3.53209 3.67878 4.03242 4.05898 4.38024 4.50765 4.58534 4.59575 4.75110 4.76921 4.81569 4.88219 5.10109 5.12006 5.21283 5.26419 5.45579 5.45906 5.52919 5.57207 5.58552 5.75329 5.85490 5.87371 6.04326 6.26089 6.27510 6.36559 6.42985 6.69403 6.87014 6.91051 7.38188 7.63756 7.69107 8.42462 9.53206 10.12551 10.46845 11.46225 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.049053 B = 0.001211 C = 0.001184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.677633 B =23119.747553 C =23648.768226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.117 4.117 14 C -0.132 4.132 15 C 0.116 3.884 16 N -0.717 5.717 17 C 0.570 3.430 18 O -0.524 6.524 19 C -0.153 4.153 20 C -0.036 4.036 21 C -0.090 4.090 22 C 0.251 3.749 23 N -0.320 5.320 24 N -0.001 5.001 25 N -0.099 5.099 26 N -0.308 5.308 27 C 0.183 3.817 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.402 0.598 43 H 0.163 0.837 44 H 0.176 0.824 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.172 -32.210 0.009 32.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.024 3.976 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.170 4.170 15 C -0.007 4.007 16 N -0.368 5.368 17 C 0.355 3.645 18 O -0.401 6.401 19 C -0.162 4.162 20 C -0.062 4.062 21 C -0.112 4.112 22 C -0.004 4.004 23 N -0.179 5.179 24 N 0.006 4.994 25 N -0.082 5.082 26 N -0.086 5.086 27 C 0.053 3.947 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.238 0.762 43 H 0.180 0.820 44 H 0.193 0.807 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.161 -33.749 0.019 34.141 hybrid contribution 0.569 1.870 -0.009 1.955 sum 5.731 -31.879 0.010 32.390 Atomic orbital electron populations 1.69661 1.05137 1.25633 1.57887 1.24744 0.95528 0.97706 1.03085 0.86187 0.78645 0.83824 0.77530 1.21710 1.21733 1.20765 1.19253 0.91044 0.84288 1.42568 0.91224 1.42392 1.05902 1.00152 1.89481 1.20654 0.93645 0.85734 0.97521 1.21732 0.98905 0.93831 1.02029 1.21497 0.97844 0.93866 1.01929 1.21519 0.98472 0.92712 1.02777 1.21850 0.98226 0.93956 1.02957 1.21596 0.95033 0.80740 1.03283 1.45878 1.10626 1.05727 1.74590 1.17460 0.86917 0.82846 0.77324 1.90881 1.12846 1.87184 1.49190 1.19695 0.94241 0.93496 1.08793 1.21448 0.92328 0.99427 0.92981 1.20356 1.01994 0.86338 1.02548 1.23174 0.82566 0.96393 0.98242 1.75223 1.20441 0.96977 1.25219 1.77938 0.92409 1.23205 1.05831 1.82941 1.17567 0.80045 1.27630 1.48872 1.07560 1.08012 1.44159 1.21766 1.00624 0.79983 0.92365 0.93521 0.78337 0.96617 0.96606 0.92073 0.92066 0.92067 0.92060 0.91522 0.91514 0.91080 0.91072 0.90689 0.90682 0.76243 0.81986 0.80674 0.78548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.74 -18.84 5.60 -59.91 -0.34 -19.18 16 10 C 0.15 3.01 6.26 -4.04 -0.03 2.98 16 11 C -0.13 -1.91 5.33 -26.73 -0.14 -2.05 16 12 C -0.11 -1.19 5.21 -26.74 -0.14 -1.33 16 13 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 14 C -0.13 -0.66 5.33 -26.73 -0.14 -0.81 16 15 C 0.12 0.62 5.67 -4.04 -0.02 0.60 16 16 N -0.72 -2.65 5.51 -61.30 -0.34 -2.99 16 17 C 0.57 3.23 7.77 -12.40 -0.10 3.13 16 18 O -0.52 -5.07 16.28 5.30 0.09 -4.98 16 19 C -0.15 -0.57 5.84 -105.33 -0.62 -1.19 16 20 C -0.04 -0.04 9.53 -39.18 -0.37 -0.41 16 21 C -0.09 -0.22 10.09 -39.47 -0.40 -0.62 16 22 C 0.25 1.73 8.03 -156.27 -1.25 0.47 16 23 N -0.32 -3.11 12.26 31.10 0.38 -2.72 16 24 N 0.00 -0.01 13.35 60.35 0.81 0.80 16 25 N -0.10 -0.99 13.99 60.35 0.84 -0.14 16 26 N -0.31 -2.28 3.92 -12.06 -0.05 -2.33 16 27 C 0.18 0.95 10.77 -16.51 -0.18 0.77 16 28 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 29 H 0.38 10.28 7.67 -40.81 -0.31 9.97 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.40 0.20 6.51 -40.82 -0.27 -0.07 16 43 H 0.16 -0.42 6.44 -52.49 -0.34 -0.75 16 44 H 0.18 -0.05 8.06 -52.49 -0.42 -0.47 16 45 H 0.20 0.86 7.57 -52.49 -0.40 0.47 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -36.53 385.47 -7.22 -43.75 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.36 Total: -0.68 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.77 Total: -6.99 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 2.04 Total: -54.22 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: 0.09 Total: -4.98 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.53 -7.22 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179009986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.992 kcal (2) G-P(sol) polarization free energy of solvation -36.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds