Wall clock time and date at job start Tue Mar 31 2020 17:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00073 * 2 1 4 4 H 1.48500 * 109.47383 * 270.00672 * 3 2 1 5 5 H 1.48510 * 109.46967 * 30.00544 * 3 2 1 6 6 H 1.48496 * 109.47221 * 150.00210 * 3 2 1 7 7 C 1.38807 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00472 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00514 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47577 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47264 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47202 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47530 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47530 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47326 * 179.97438 * 15 14 13 17 17 C 1.34774 * 119.99868 * 179.97438 * 16 15 14 18 18 O 1.21572 * 120.00583 * 0.02562 * 17 16 15 19 19 C 1.47693 * 120.00016 * 180.02562 * 17 16 15 20 20 C 1.41603 * 120.03147 * 0.02562 * 19 17 16 21 21 C 1.35775 * 119.54841 * 180.29857 * 20 19 17 22 22 C 1.40866 * 119.39313 * 359.48308 * 21 20 19 23 23 N 1.32481 * 133.42217 * 180.19457 * 22 21 20 24 24 N 1.28528 * 110.24848 * 180.29340 * 23 22 21 25 25 N 1.28988 * 110.83997 * 359.97438 * 24 23 22 26 26 N 1.36931 * 119.92891 * 0.51921 * 22 21 20 27 27 C 1.35500 * 120.84255 * 359.73056 * 26 22 21 28 28 H 0.97007 * 120.00215 * 359.97438 * 1 2 3 29 29 H 0.97011 * 119.99785 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47532 * 59.99382 * 10 9 7 31 31 H 1.08995 * 109.47190 * 299.99649 * 10 9 7 32 32 H 1.09000 * 109.46785 * 59.99906 * 11 10 9 33 33 H 1.09003 * 109.46837 * 299.99995 * 11 10 9 34 34 H 1.09005 * 109.47571 * 60.00054 * 12 11 10 35 35 H 1.09003 * 109.47307 * 299.99851 * 12 11 10 36 36 H 1.09002 * 109.47317 * 60.00152 * 13 12 11 37 37 H 1.08998 * 109.47523 * 300.00327 * 13 12 11 38 38 H 1.09005 * 109.47405 * 59.99958 * 14 13 12 39 39 H 1.09003 * 109.47146 * 299.99955 * 14 13 12 40 40 H 1.09002 * 109.47317 * 60.00154 * 15 14 13 41 41 H 1.08998 * 109.47523 * 300.00330 * 15 14 13 42 42 H 0.96998 * 120.00097 * 0.02562 * 16 15 14 43 43 H 1.08002 * 120.22180 * 0.02562 * 20 19 17 44 44 H 1.08001 * 120.30671 * 179.72104 * 21 20 19 45 45 H 1.08000 * 119.82059 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.8288 -6.1446 -0.0005 13 6 0.8346 -7.3076 0.0008 14 6 1.5996 -8.6326 -0.0005 15 6 0.6054 -9.7955 0.0014 16 7 1.3379 -11.0643 -0.0005 17 6 0.6640 -12.2314 0.0013 18 8 -0.5517 -12.2315 0.0040 19 6 1.4024 -13.5105 0.0000 20 6 2.8185 -13.5113 -0.0025 21 6 3.4874 -14.6928 -0.0099 22 6 2.7600 -15.8992 -0.0037 23 7 3.1138 -17.1759 -0.0048 24 7 2.0705 -17.9265 -0.0032 25 7 0.9939 -17.2160 -0.0005 26 7 1.3910 -15.8714 -0.0013 27 6 0.7200 -14.6942 0.0008 28 1 -0.4851 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 2.6848 -3.7145 0.8894 31 1 2.6846 -3.7145 -0.8905 32 1 0.4368 -4.7621 -0.8897 33 1 0.4375 -4.7618 0.8904 34 1 2.4562 -6.2025 0.8890 35 1 2.4548 -6.2024 -0.8910 36 1 0.2070 -7.2500 -0.8886 37 1 0.2089 -7.2497 0.8914 38 1 2.2276 -8.6905 0.8885 39 1 2.2250 -8.6902 -0.8915 40 1 -0.0229 -9.7379 -0.8875 41 1 -0.0197 -9.7378 0.8925 42 1 2.3079 -11.0643 -0.0022 43 1 3.3626 -12.5784 -0.0031 44 1 4.5673 -14.7077 -0.0164 45 1 -0.3600 -14.6916 0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179009986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:25 Heat of formation + Delta-G solvation = 79.116165 kcal Electronic energy + Delta-G solvation = -25571.286757 eV Core-core repulsion = 21625.586649 eV Total energy + Delta-G solvation = -3945.700108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.65795 -41.36409 -39.37305 -37.87164 -36.79688 -35.59290 -35.14293 -33.76784 -33.18572 -31.78418 -31.40440 -28.52239 -26.78873 -25.65947 -25.41635 -24.11246 -23.62492 -22.43348 -22.08024 -21.72613 -20.05126 -19.11268 -18.66758 -18.63052 -18.15873 -17.05445 -17.03435 -16.65510 -16.34237 -16.17152 -15.74282 -15.39272 -15.35151 -15.17905 -14.81727 -14.69582 -14.32610 -13.95474 -13.87038 -13.80281 -13.37549 -13.03026 -12.92876 -12.92426 -12.83141 -12.62041 -12.36811 -12.33475 -12.15239 -11.98287 -11.75277 -11.75008 -11.54863 -11.40920 -11.27316 -11.21525 -10.91698 -10.21229 -9.85083 -8.99617 -7.95248 -5.24486 -1.10542 -0.66696 0.38932 0.66377 1.45891 1.48124 1.50206 1.58759 1.92772 2.19551 2.45907 2.56916 2.90274 3.24124 3.38620 3.38749 3.65048 3.76621 3.79049 3.98867 4.07485 4.09796 4.31339 4.33970 4.39681 4.39988 4.60338 4.62676 4.65804 4.70987 4.84298 4.90642 4.95474 5.02698 5.04540 5.05752 5.13206 5.22454 5.32015 5.35454 5.44151 5.50868 5.59738 5.63133 6.27705 6.37731 7.02782 7.04104 7.33214 8.11180 8.33143 9.28604 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.049053 B = 0.001211 C = 0.001184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.677633 B =23119.747553 C =23648.768226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.752 5.752 10 C 0.147 3.853 11 C -0.118 4.118 12 C -0.104 4.104 13 C -0.116 4.116 14 C -0.119 4.119 15 C 0.119 3.881 16 N -0.698 5.698 17 C 0.571 3.429 18 O -0.569 6.569 19 C -0.135 4.135 20 C -0.010 4.010 21 C -0.081 4.081 22 C 0.238 3.762 23 N -0.347 5.347 24 N -0.026 5.026 25 N -0.131 5.131 26 N -0.309 5.309 27 C 0.163 3.837 28 H 0.251 0.749 29 H 0.372 0.628 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.422 0.578 43 H 0.213 0.787 44 H 0.211 0.789 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.093 -31.335 0.013 32.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.021 3.979 11 C -0.156 4.156 12 C -0.142 4.142 13 C -0.154 4.154 14 C -0.157 4.157 15 C -0.005 4.005 16 N -0.350 5.350 17 C 0.357 3.643 18 O -0.449 6.449 19 C -0.144 4.144 20 C -0.036 4.036 21 C -0.103 4.103 22 C -0.014 4.014 23 N -0.207 5.207 24 N -0.019 5.019 25 N -0.115 5.115 26 N -0.087 5.087 27 C 0.033 3.967 28 H 0.060 0.940 29 H 0.204 0.796 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.261 0.739 43 H 0.229 0.771 44 H 0.228 0.772 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.154 -32.897 0.022 33.893 hybrid contribution -0.320 1.729 -0.011 1.759 sum 7.834 -31.168 0.011 32.137 Atomic orbital electron populations 1.69823 1.06732 1.26138 1.59534 1.25610 0.96423 1.01265 1.03599 0.85113 0.77739 0.79230 0.77524 1.21279 1.22125 1.19245 1.19696 0.91600 0.85539 1.41325 0.90565 1.42682 1.05692 1.01604 1.89457 1.20901 0.94486 0.85059 0.97468 1.21658 0.98086 0.94605 1.01270 1.21422 0.97971 0.91944 1.02829 1.21457 0.98092 0.93428 1.02399 1.21715 0.97779 0.91636 1.04561 1.21458 0.95187 0.81538 1.02283 1.45685 1.11593 1.04552 1.73197 1.17642 0.86402 0.83652 0.76649 1.90876 1.14977 1.87769 1.51283 1.19659 0.95486 0.91856 1.07382 1.21942 0.90741 1.00910 0.90010 1.20901 1.03472 0.84679 1.01295 1.23808 0.82612 0.96865 0.98127 1.75081 1.20700 0.98359 1.26562 1.77874 0.92955 1.24196 1.06876 1.82828 1.17803 0.81395 1.29455 1.48800 1.08070 1.07651 1.44148 1.21916 1.00988 0.79966 0.93880 0.93976 0.79621 0.96275 0.96252 0.92875 0.92866 0.91134 0.91125 0.92037 0.92028 0.89446 0.89437 0.91850 0.91840 0.73896 0.77058 0.77194 0.78793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 3 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -38.57 5.60 -343.46 -1.92 -40.49 16 10 C 0.15 5.66 6.26 86.38 0.54 6.20 16 11 C -0.12 -3.42 5.33 30.59 0.16 -3.26 16 12 C -0.10 -1.89 5.21 30.59 0.16 -1.73 16 13 C -0.12 -1.53 5.21 30.59 0.16 -1.37 16 14 C -0.12 -0.72 5.33 30.59 0.16 -0.55 16 15 C 0.12 0.94 5.67 86.38 0.49 1.43 16 16 N -0.70 -2.50 5.51 -466.12 -2.57 -5.07 16 17 C 0.57 5.15 7.77 86.74 0.67 5.82 16 18 O -0.57 -10.67 16.28 -3.94 -0.06 -10.73 16 19 C -0.13 -0.66 5.84 -20.32 -0.12 -0.78 16 20 C -0.01 0.03 9.53 22.53 0.21 0.24 16 21 C -0.08 -0.11 10.09 22.34 0.23 0.12 16 22 C 0.24 3.06 8.03 134.16 1.08 4.14 16 23 N -0.35 -6.88 12.26 -55.52 -0.68 -7.56 16 24 N -0.03 -0.61 13.35 37.02 0.49 -0.11 16 25 N -0.13 -2.84 13.99 37.02 0.52 -2.32 16 26 N -0.31 -4.66 3.92 -192.06 -0.75 -5.41 16 27 C 0.16 1.64 10.77 83.75 0.90 2.54 16 28 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 29 H 0.37 20.32 7.67 -92.70 -0.71 19.61 16 30 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 39 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.42 -1.99 6.51 -92.71 -0.60 -2.60 16 43 H 0.21 -2.63 6.44 -2.91 -0.02 -2.65 16 44 H 0.21 -1.18 8.06 -2.91 -0.02 -1.20 16 45 H 0.20 1.92 7.57 -2.91 -0.02 1.90 16 Total: -1.00 -83.49 385.47 3.00 -80.49 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -0.28 Total: 7.27 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.96 Total: -4.35 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -4.63 Total: -120.36 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.06 Total: -10.73 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -83.49 3.00 -80.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179009986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.602 kcal (2) G-P(sol) polarization free energy of solvation -83.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds