Wall clock time and date at job start Tue Mar 31 2020 16:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46904 * 111.00409 * 2 1 4 4 C 1.53000 * 109.46552 * 66.04441 * 3 2 1 5 5 C 1.53002 * 109.47029 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47227 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47227 * 179.97438 * 6 5 4 8 8 F 1.39894 * 109.47319 * 179.97438 * 7 6 5 9 9 C 1.46903 * 110.99960 * 236.04954 * 2 1 3 10 10 H 1.08997 * 110.89006 * 62.49646 * 9 2 1 11 11 C 1.55158 * 111.00371 * 186.41815 * 9 2 1 12 12 C 1.54322 * 102.94107 * 153.57433 * 11 9 2 13 13 N 1.47016 * 107.27342 * 337.80563 * 12 11 9 14 14 C 1.34777 * 125.65227 * 178.90135 * 13 12 11 15 15 O 1.21276 * 120.00372 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99580 * 0.04852 * 14 13 12 17 17 S 1.81003 * 109.46947 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00131 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00017 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00276 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00173 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99865 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47089 * 90.00222 * 22 20 18 24 24 H 1.48497 * 109.47193 * 210.00235 * 22 20 18 25 25 H 1.48504 * 109.47122 * 330.00282 * 22 20 18 26 26 C 1.47425 * 108.70347 * 358.94335 * 13 12 11 27 27 H 1.09005 * 109.47603 * 178.33652 * 1 2 3 28 28 H 1.09001 * 109.47011 * 58.33692 * 1 2 3 29 29 H 1.09002 * 109.47083 * 298.34269 * 1 2 3 30 30 H 1.09000 * 109.47295 * 186.04149 * 3 2 1 31 31 H 1.08997 * 109.47220 * 306.04989 * 3 2 1 32 32 H 1.09000 * 109.47548 * 300.00090 * 4 3 2 33 33 H 1.09005 * 109.47254 * 60.00332 * 4 3 2 34 34 H 1.09000 * 109.46865 * 300.00308 * 5 4 3 35 35 H 1.08997 * 109.47146 * 60.00301 * 5 4 3 36 36 H 1.09000 * 109.47182 * 299.99787 * 6 5 4 37 37 H 1.08997 * 109.47078 * 59.99933 * 6 5 4 38 38 H 1.09000 * 109.46865 * 299.99981 * 7 6 5 39 39 H 1.09005 * 109.46996 * 59.99646 * 7 6 5 40 40 H 1.09003 * 110.72268 * 271.93612 * 11 9 2 41 41 H 1.09004 * 110.72134 * 35.21361 * 11 9 2 42 42 H 1.09008 * 109.88376 * 218.39086 * 12 11 9 43 43 H 1.08995 * 110.01302 * 97.29808 * 12 11 9 44 44 H 1.09001 * 109.47299 * 299.99254 * 16 14 13 45 45 H 1.08991 * 109.47538 * 59.99967 * 16 14 13 46 46 H 0.97003 * 119.99927 * 179.97438 * 21 20 18 47 47 H 1.09007 * 110.36418 * 265.28902 * 26 13 12 48 48 H 1.08997 * 110.37134 * 142.96426 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0573 1.3183 5 6 2.1792 3.4859 1.3181 6 6 1.8158 4.1717 2.6367 7 6 2.3641 5.6001 2.6368 8 9 2.0313 6.2273 3.8421 9 6 1.9954 -0.7659 -1.1377 10 1 1.6956 -0.3134 -2.0829 11 6 3.5385 -0.9021 -1.0500 12 6 3.8151 -2.2060 -1.8278 13 7 2.5704 -2.9884 -1.8250 14 6 2.3931 -4.1847 -2.4198 15 8 1.3180 -4.7419 -2.3529 16 6 3.5311 -4.8302 -3.1677 17 16 2.9839 -6.4161 -3.8473 18 6 4.4664 -6.9347 -4.6459 19 1 5.3468 -6.3102 -4.6085 20 6 4.5029 -8.1457 -5.3231 21 7 5.6106 -8.5333 -5.9193 22 14 2.9803 -9.2261 -5.3873 23 1 2.1692 -8.8681 -6.5785 24 1 3.3880 -10.6512 -5.4762 25 1 2.1734 -9.0178 -4.1581 26 6 1.5478 -2.2471 -1.0645 27 1 -0.3634 -1.0272 -0.0298 28 1 -0.3633 0.5395 -0.8747 29 1 -0.3633 0.4879 0.9045 30 1 3.0797 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8308 32 1 0.5471 2.0844 1.4265 33 1 2.0658 1.5014 2.1492 34 1 3.2635 3.4592 1.2097 35 1 1.7446 4.0417 0.4873 36 1 0.7315 4.1984 2.7455 37 1 2.2508 3.6158 3.4672 38 1 3.4484 5.5730 2.5281 39 1 1.9295 6.1562 1.8061 40 1 4.0283 -0.0552 -1.5305 41 1 3.8590 -0.9966 -0.0125 42 1 4.6082 -2.7696 -1.3364 43 1 4.1052 -1.9747 -2.8526 44 1 3.8490 -4.1767 -3.9802 45 1 4.3659 -4.9958 -2.4868 46 1 5.6361 -9.3799 -6.3923 47 1 1.5256 -2.5860 -0.0287 48 1 0.5681 -2.3706 -1.5260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188958046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:07 Heat of formation + Delta-G solvation = -97.661832 kcal Electronic energy + Delta-G solvation = -25453.834023 eV Core-core repulsion = 21583.699484 eV Total energy + Delta-G solvation = -3870.134539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -48.07054 -40.14695 -38.49151 -36.76017 -35.30386 -32.44247 -31.71390 -30.80279 -29.73883 -27.94508 -27.07087 -25.62652 -24.78914 -22.94589 -22.23307 -21.44596 -20.42953 -19.40662 -17.74783 -17.14362 -16.92942 -16.69500 -16.25759 -15.82821 -15.63833 -15.28477 -15.14196 -14.96184 -14.81509 -14.48309 -14.24662 -13.78259 -13.66893 -13.12459 -13.03406 -12.86527 -12.84437 -12.66677 -12.53765 -12.39783 -12.03839 -11.91731 -11.72473 -11.49463 -11.35726 -11.26882 -11.17512 -11.15525 -11.01051 -10.98504 -10.92489 -10.60498 -9.86086 -9.54178 -9.00532 -8.78481 -8.58484 -8.50182 -6.92461 -6.29205 -4.01049 2.64310 2.93406 3.12009 3.32982 3.46468 3.50832 3.63065 3.99653 4.12478 4.17843 4.32162 4.33219 4.39948 4.49673 4.53388 4.68914 4.73671 4.76378 4.87403 4.91438 4.97728 5.05637 5.09926 5.10800 5.17496 5.20126 5.23845 5.25085 5.31953 5.39625 5.45830 5.55124 5.56552 5.62673 5.65445 5.69793 5.73938 5.77475 5.85117 5.88375 6.01310 6.29445 6.62020 6.68043 7.56413 7.93815 8.41112 8.42412 9.17037 10.79970 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.041849 B = 0.001626 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.917941 B =17214.688408 C =17745.876516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.531 5.531 3 C 0.054 3.946 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.153 4.153 7 C 0.059 3.941 8 F -0.221 7.221 9 C 0.067 3.933 10 H 0.059 0.941 11 C -0.122 4.122 12 C 0.102 3.898 13 N -0.624 5.624 14 C 0.548 3.452 15 O -0.518 6.518 16 C -0.117 4.117 17 S -0.143 6.143 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.119 3.881 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.076 0.924 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 28.120 15.217 32.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.255 5.255 3 C -0.074 4.074 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.191 4.191 7 C 0.004 3.996 8 F -0.202 7.202 9 C -0.042 4.042 10 H 0.077 0.923 11 C -0.160 4.160 12 C -0.022 4.022 13 N -0.362 5.362 14 C 0.336 3.664 15 O -0.392 6.392 16 C -0.268 4.268 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.005 4.005 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.214 26.838 15.615 31.877 hybrid contribution 0.599 0.528 -1.041 1.312 sum -6.615 27.366 14.574 31.702 Atomic orbital electron populations 1.22491 0.87032 1.02615 1.00899 1.61979 1.08130 1.13490 1.41918 1.22165 1.00571 0.87726 0.96935 1.21580 1.01341 0.94473 0.97968 1.21460 1.01536 0.95894 0.96660 1.22170 1.02458 0.95021 0.99407 1.22046 1.01248 0.93175 0.83093 1.92770 1.94417 1.84176 1.48876 1.22799 0.95347 0.93740 0.92295 0.92349 1.22703 0.94633 0.96811 1.01852 1.22022 0.87531 0.91777 1.00867 1.48380 1.13182 1.19893 1.54757 1.19985 0.89521 0.78889 0.77987 1.90704 1.27177 1.61641 1.59728 1.23249 0.99281 1.02013 1.02217 1.84791 1.21303 1.17027 1.68504 1.22307 0.97048 1.09215 1.38296 0.89389 1.24703 0.96368 0.96609 0.93551 1.69940 1.26406 1.22218 1.33120 0.86739 0.83544 0.80271 0.81332 1.19211 1.19910 1.15917 1.22083 0.92403 0.89013 0.96960 0.90895 0.95465 0.90925 0.90357 0.94792 0.91735 0.90780 0.91387 0.91695 0.90777 0.90586 0.90753 0.90869 0.90208 0.89324 0.90839 0.91116 0.88594 0.88481 0.91942 0.90572 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.14 60.06 0.55 0.67 16 2 N -0.53 -4.01 4.66 -232.30 -1.08 -5.10 16 3 C 0.05 0.31 4.84 -3.82 -0.02 0.29 16 4 C -0.12 -0.55 5.14 -26.73 -0.14 -0.69 16 5 C -0.12 -0.41 5.21 -26.73 -0.14 -0.55 16 6 C -0.15 -0.62 5.67 -26.73 -0.15 -0.77 16 7 C 0.06 0.25 7.55 37.16 0.28 0.53 16 8 F -0.22 -1.71 17.36 2.25 0.04 -1.68 16 9 C 0.07 0.59 2.71 -65.56 -0.18 0.41 16 10 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 11 C -0.12 -0.94 5.36 -24.90 -0.13 -1.07 16 12 C 0.10 1.05 6.49 -3.07 -0.02 1.03 16 13 N -0.62 -8.77 3.33 -170.52 -0.57 -9.34 16 14 C 0.55 10.24 7.87 -10.98 -0.09 10.16 16 15 O -0.52 -11.60 16.12 5.56 0.09 -11.51 16 16 C -0.12 -2.33 5.35 36.01 0.19 -2.13 16 17 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 18 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 22 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 26 C 0.12 1.40 5.31 -2.53 -0.01 1.39 16 27 H 0.07 0.57 6.86 -51.93 -0.36 0.21 16 28 H 0.03 0.19 8.13 -51.93 -0.42 -0.23 16 29 H 0.07 0.44 6.55 -51.93 -0.34 0.10 16 30 H 0.08 0.42 6.77 -51.93 -0.35 0.07 16 31 H 0.03 0.20 8.11 -51.93 -0.42 -0.22 16 32 H 0.06 0.32 6.59 -51.93 -0.34 -0.02 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.08 0.47 7.88 -51.93 -0.41 0.06 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 45 H 0.10 1.81 8.14 -51.92 -0.42 1.38 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.07 0.97 7.78 -51.93 -0.40 0.56 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -34.16 397.84 -9.64 -43.80 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -8.54 Total: -5.13 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 0.36 Total: -2.76 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: -0.87 Total: -40.21 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.16 -9.64 -43.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.857 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds