Wall clock time and date at job start Tue Mar 31 2020 16:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46904 * 111.00409 * 2 1 4 4 C 1.53000 * 109.46552 * 66.04441 * 3 2 1 5 5 C 1.53002 * 109.47029 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47227 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47227 * 179.97438 * 6 5 4 8 8 F 1.39894 * 109.47319 * 179.97438 * 7 6 5 9 9 C 1.46903 * 110.99960 * 236.04954 * 2 1 3 10 10 H 1.08997 * 110.89006 * 62.49646 * 9 2 1 11 11 C 1.55158 * 111.00371 * 186.41815 * 9 2 1 12 12 C 1.54322 * 102.94107 * 153.57433 * 11 9 2 13 13 N 1.47016 * 107.27342 * 337.80563 * 12 11 9 14 14 C 1.34777 * 125.65227 * 178.90135 * 13 12 11 15 15 O 1.21276 * 120.00372 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99580 * 0.04852 * 14 13 12 17 17 S 1.81003 * 109.46947 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00131 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00017 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00276 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00173 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99865 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47089 * 90.00222 * 22 20 18 24 24 H 1.48497 * 109.47193 * 210.00235 * 22 20 18 25 25 H 1.48504 * 109.47122 * 330.00282 * 22 20 18 26 26 C 1.47425 * 108.70347 * 358.94335 * 13 12 11 27 27 H 1.09005 * 109.47603 * 178.33652 * 1 2 3 28 28 H 1.09001 * 109.47011 * 58.33692 * 1 2 3 29 29 H 1.09002 * 109.47083 * 298.34269 * 1 2 3 30 30 H 1.09000 * 109.47295 * 186.04149 * 3 2 1 31 31 H 1.08997 * 109.47220 * 306.04989 * 3 2 1 32 32 H 1.09000 * 109.47548 * 300.00090 * 4 3 2 33 33 H 1.09005 * 109.47254 * 60.00332 * 4 3 2 34 34 H 1.09000 * 109.46865 * 300.00308 * 5 4 3 35 35 H 1.08997 * 109.47146 * 60.00301 * 5 4 3 36 36 H 1.09000 * 109.47182 * 299.99787 * 6 5 4 37 37 H 1.08997 * 109.47078 * 59.99933 * 6 5 4 38 38 H 1.09000 * 109.46865 * 299.99981 * 7 6 5 39 39 H 1.09005 * 109.46996 * 59.99646 * 7 6 5 40 40 H 1.09003 * 110.72268 * 271.93612 * 11 9 2 41 41 H 1.09004 * 110.72134 * 35.21361 * 11 9 2 42 42 H 1.09008 * 109.88376 * 218.39086 * 12 11 9 43 43 H 1.08995 * 110.01302 * 97.29808 * 12 11 9 44 44 H 1.09001 * 109.47299 * 299.99254 * 16 14 13 45 45 H 1.08991 * 109.47538 * 59.99967 * 16 14 13 46 46 H 0.97003 * 119.99927 * 179.97438 * 21 20 18 47 47 H 1.09007 * 110.36418 * 265.28902 * 26 13 12 48 48 H 1.08997 * 110.37134 * 142.96426 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0573 1.3183 5 6 2.1792 3.4859 1.3181 6 6 1.8158 4.1717 2.6367 7 6 2.3641 5.6001 2.6368 8 9 2.0313 6.2273 3.8421 9 6 1.9954 -0.7659 -1.1377 10 1 1.6956 -0.3134 -2.0829 11 6 3.5385 -0.9021 -1.0500 12 6 3.8151 -2.2060 -1.8278 13 7 2.5704 -2.9884 -1.8250 14 6 2.3931 -4.1847 -2.4198 15 8 1.3180 -4.7419 -2.3529 16 6 3.5311 -4.8302 -3.1677 17 16 2.9839 -6.4161 -3.8473 18 6 4.4664 -6.9347 -4.6459 19 1 5.3468 -6.3102 -4.6085 20 6 4.5029 -8.1457 -5.3231 21 7 5.6106 -8.5333 -5.9193 22 14 2.9803 -9.2261 -5.3873 23 1 2.1692 -8.8681 -6.5785 24 1 3.3880 -10.6512 -5.4762 25 1 2.1734 -9.0178 -4.1581 26 6 1.5478 -2.2471 -1.0645 27 1 -0.3634 -1.0272 -0.0298 28 1 -0.3633 0.5395 -0.8747 29 1 -0.3633 0.4879 0.9045 30 1 3.0797 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8308 32 1 0.5471 2.0844 1.4265 33 1 2.0658 1.5014 2.1492 34 1 3.2635 3.4592 1.2097 35 1 1.7446 4.0417 0.4873 36 1 0.7315 4.1984 2.7455 37 1 2.2508 3.6158 3.4672 38 1 3.4484 5.5730 2.5281 39 1 1.9295 6.1562 1.8061 40 1 4.0283 -0.0552 -1.5305 41 1 3.8590 -0.9966 -0.0125 42 1 4.6082 -2.7696 -1.3364 43 1 4.1052 -1.9747 -2.8526 44 1 3.8490 -4.1767 -3.9802 45 1 4.3659 -4.9958 -2.4868 46 1 5.6361 -9.3799 -6.3923 47 1 1.5256 -2.5860 -0.0287 48 1 0.5681 -2.3706 -1.5260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188958046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:06 Heat of formation + Delta-G solvation = -119.316070 kcal Electronic energy + Delta-G solvation = -25454.773021 eV Core-core repulsion = 21583.699484 eV Total energy + Delta-G solvation = -3871.073537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.53958 -41.22413 -39.47321 -37.56096 -35.86271 -34.68162 -32.66815 -31.41935 -30.93239 -28.92278 -27.86731 -27.59667 -25.40931 -23.84526 -22.65981 -21.83395 -21.10699 -20.74781 -19.62179 -18.20549 -17.82293 -17.36384 -17.14110 -16.72639 -16.71481 -16.37771 -16.01626 -15.98944 -15.65769 -15.50821 -15.29001 -14.98782 -14.89256 -14.40400 -14.09599 -13.84160 -13.69010 -13.41386 -13.35048 -13.28033 -13.04880 -13.02127 -12.96096 -12.68010 -12.42222 -12.29186 -11.96065 -11.89602 -11.88160 -11.81548 -11.52658 -11.47543 -11.29395 -11.17883 -11.05986 -10.55775 -9.76818 -9.35248 -9.02493 -8.52359 -6.23946 0.94151 1.30663 1.43939 1.47240 1.51959 1.98306 2.24408 2.65843 2.85889 2.87474 3.28324 3.62883 3.66333 3.77316 3.89967 4.00200 4.02707 4.12668 4.14996 4.23964 4.27490 4.32221 4.38566 4.40399 4.50266 4.55815 4.58415 4.59542 4.66729 4.79057 4.82442 4.85300 4.94564 4.95429 4.97633 5.03044 5.07274 5.16245 5.26864 5.28507 5.40936 5.49982 5.69965 6.04529 6.09408 6.10365 6.31908 6.92756 7.00966 8.59928 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.041849 B = 0.001626 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.917941 B =17214.688408 C =17745.876516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.537 5.537 3 C 0.055 3.945 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.149 4.149 7 C 0.052 3.948 8 F -0.243 7.243 9 C 0.078 3.922 10 H 0.059 0.941 11 C -0.109 4.109 12 C 0.090 3.910 13 N -0.616 5.616 14 C 0.547 3.453 15 O -0.565 6.565 16 C -0.101 4.101 17 S -0.176 6.176 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.048 3.952 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.258 1.258 25 H -0.239 1.239 26 C 0.116 3.884 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.277 0.723 47 H 0.074 0.926 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.731 30.070 15.760 34.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.261 5.261 3 C -0.073 4.073 4 C -0.149 4.149 5 C -0.148 4.148 6 C -0.187 4.187 7 C -0.003 4.003 8 F -0.224 7.224 9 C -0.031 4.031 10 H 0.077 0.923 11 C -0.146 4.146 12 C -0.032 4.032 13 N -0.351 5.351 14 C 0.335 3.665 15 O -0.444 6.444 16 C -0.252 4.252 17 S 0.050 5.950 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.157 4.157 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.182 1.182 25 H -0.163 1.163 26 C -0.007 4.007 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.054 28.844 16.178 33.815 hybrid contribution 0.610 0.088 -1.132 1.289 sum -6.444 28.932 15.045 33.241 Atomic orbital electron populations 1.22491 0.86971 1.02020 1.01549 1.61993 1.08308 1.14666 1.41154 1.22228 1.01068 0.86531 0.97440 1.21524 1.01143 0.95057 0.97180 1.21396 1.02063 0.94946 0.96424 1.22120 1.02054 0.94967 0.99605 1.22281 1.02369 0.93192 0.82434 1.92725 1.94654 1.84643 1.50418 1.22656 0.96094 0.91525 0.92862 0.92323 1.22694 0.93694 0.96153 1.02099 1.22390 0.85939 0.92648 1.02248 1.48338 1.15298 1.18528 1.52905 1.19682 0.88334 0.80119 0.78343 1.90682 1.28512 1.63355 1.61826 1.23192 1.00145 0.98894 1.02955 1.84733 1.20197 1.21297 1.68752 1.22432 0.97523 1.09138 1.38561 0.91854 1.25525 0.99063 0.97897 0.93240 1.70012 1.28191 1.23105 1.33994 0.85890 0.80123 0.79303 0.81199 1.18655 1.18173 1.16256 1.22208 0.91313 0.91067 0.96095 0.92120 0.95268 0.89865 0.89368 0.94471 0.92083 0.91567 0.90490 0.90961 0.91344 0.91220 0.89305 0.89427 0.87394 0.88718 0.90063 0.90075 0.87025 0.87049 0.91323 0.90817 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.14 127.69 1.17 1.39 16 2 N -0.54 -6.92 4.66 -888.88 -4.14 -11.06 16 3 C 0.05 0.47 4.84 86.30 0.42 0.88 16 4 C -0.11 -0.80 5.14 30.60 0.16 -0.64 16 5 C -0.11 -0.49 5.21 30.59 0.16 -0.33 16 6 C -0.15 -0.97 5.67 30.59 0.17 -0.79 16 7 C 0.05 0.35 7.55 71.98 0.54 0.90 16 8 F -0.24 -3.58 17.36 44.97 0.78 -2.80 16 9 C 0.08 1.18 2.71 46.31 0.13 1.30 16 10 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 11 C -0.11 -1.29 5.36 31.78 0.17 -1.12 16 12 C 0.09 1.60 6.49 86.73 0.56 2.17 16 13 N -0.62 -16.46 3.33 -811.81 -2.70 -19.16 16 14 C 0.55 20.19 7.87 87.66 0.69 20.88 16 15 O -0.56 -25.55 16.12 -3.02 -0.05 -25.60 16 16 C -0.10 -3.95 5.35 71.24 0.38 -3.57 16 17 S -0.18 -9.07 18.55 -56.49 -1.05 -10.12 16 18 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 19 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 20 C 0.05 2.84 5.50 84.86 0.47 3.31 16 21 N -0.92 -55.60 13.97 21.65 0.30 -55.30 16 22 Si 0.91 45.15 27.74 68.60 1.90 47.05 16 23 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 26 C 0.12 2.63 5.31 86.86 0.46 3.09 16 27 H 0.06 0.92 6.86 -2.38 -0.02 0.90 16 28 H 0.03 0.36 8.13 -2.39 -0.02 0.34 16 29 H 0.08 0.88 6.55 -2.39 -0.02 0.86 16 30 H 0.09 0.60 6.77 -2.39 -0.02 0.58 16 31 H 0.04 0.32 8.11 -2.39 -0.02 0.30 16 32 H 0.06 0.49 6.59 -2.39 -0.02 0.47 16 33 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 40 H 0.11 0.76 7.88 -2.39 -0.02 0.74 16 41 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 45 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 46 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 47 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 48 H 0.06 1.55 7.78 -2.39 -0.02 1.53 16 Total: -1.00 -74.74 397.84 2.08 -72.66 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.88 Total: 7.10 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 6.16 Total: -2.78 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -6.54 Total: -85.52 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.12 kcal Total: -74.74 2.08 -72.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.657 kcal (2) G-P(sol) polarization free energy of solvation -74.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds