Wall clock time and date at job start Tue Mar 31 2020 16:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 120.00009 * 2 1 4 4 H 1.08001 * 120.00108 * 203.29480 * 3 2 1 5 5 C 1.38816 * 120.00285 * 23.30194 * 3 2 1 6 6 N 1.31614 * 119.99528 * 13.95735 * 5 3 2 7 7 Si 1.86804 * 119.99858 * 193.96465 * 5 3 2 8 8 H 1.48494 * 109.47150 * 89.99618 * 7 5 3 9 9 H 1.48506 * 109.46469 * 209.99428 * 7 5 3 10 10 H 1.48493 * 109.47162 * 329.99344 * 7 5 3 11 11 C 1.46503 * 119.99846 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.88424 * 182.42617 * 11 2 1 13 13 C 1.55151 * 111.00600 * 58.54609 * 11 2 1 14 14 C 1.54319 * 102.94257 * 206.38578 * 13 11 2 15 15 N 1.47024 * 107.27426 * 22.19412 * 14 13 11 16 16 C 1.34775 * 125.65172 * 181.02149 * 15 14 13 17 17 O 1.21280 * 120.00088 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00022 * 0.02562 * 16 15 14 19 19 C 1.50696 * 109.47179 * 179.97438 * 18 16 15 20 20 C 1.32562 * 119.99956 * 125.00240 * 19 18 16 21 21 C 1.47819 * 119.99771 * 180.02562 * 20 19 18 22 22 C 1.39571 * 120.12527 * 179.97438 * 21 20 19 23 23 C 1.37964 * 119.90457 * 179.70092 * 22 21 20 24 24 C 1.38328 * 120.17045 * 0.29977 * 23 22 21 25 25 C 1.38547 * 120.25703 * 359.97438 * 24 23 22 26 26 F 1.35108 * 119.94985 * 179.97438 * 25 24 23 27 27 C 1.38219 * 120.09427 * 359.97249 * 25 24 23 28 28 C 1.47430 * 108.69733 * 1.28474 * 15 14 13 29 29 H 1.08998 * 109.46643 * 275.16859 * 1 2 3 30 30 H 1.09002 * 109.46754 * 35.16510 * 1 2 3 31 31 H 1.08997 * 109.46903 * 155.16660 * 1 2 3 32 32 H 0.97002 * 119.99564 * 180.02562 * 6 5 3 33 33 H 1.09002 * 110.72224 * 88.01889 * 13 11 2 34 34 H 1.09003 * 110.86892 * 324.81904 * 13 11 2 35 35 H 1.08997 * 109.88664 * 262.77465 * 14 13 11 36 36 H 1.09001 * 110.00969 * 141.67928 * 14 13 11 37 37 H 1.09004 * 109.47247 * 60.00013 * 18 16 15 38 38 H 1.08997 * 109.47141 * 299.99927 * 18 16 15 39 39 H 1.08004 * 120.00018 * 305.00120 * 19 18 16 40 40 H 1.07993 * 120.00402 * 359.97438 * 20 19 18 41 41 H 1.07998 * 120.04594 * 359.97438 * 22 21 20 42 42 H 1.07995 * 119.91569 * 180.27799 * 23 22 21 43 43 H 1.07990 * 119.87015 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.08534 * 180.02562 * 27 25 24 45 45 H 1.09002 * 110.36633 * 94.48814 * 28 15 14 46 46 H 1.09001 * 110.36510 * 216.80258 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1637 1.2240 -0.3699 5 6 1.5406 2.3391 0.4755 6 7 0.4271 2.2557 1.1723 7 14 2.3013 4.0091 0.1264 8 1 1.7568 4.5445 -1.1472 9 1 1.9763 4.9424 1.2349 10 1 3.7752 3.8679 0.0141 11 6 2.1975 -1.2688 -0.0006 12 1 3.2729 -1.0966 0.0426 13 6 1.8210 -2.1278 -1.2365 14 6 2.0905 -3.5678 -0.7517 15 7 2.0433 -3.5497 0.7177 16 6 2.2484 -4.6105 1.5234 17 8 2.1842 -4.4791 2.7273 18 6 2.5576 -5.9600 0.9282 19 6 2.7427 -6.9665 2.0345 20 6 2.0200 -8.0777 2.0473 21 6 2.2011 -9.0646 3.1328 22 6 1.4413 -10.2352 3.1492 23 6 1.6184 -11.1561 4.1611 24 6 2.5427 -10.9193 5.1626 25 6 3.2966 -9.7569 5.1562 26 9 4.1972 -9.5317 6.1378 27 6 3.1287 -8.8275 4.1470 28 6 1.7283 -2.1803 1.1637 29 1 -0.3632 0.0926 1.0235 30 1 -0.3633 0.8401 -0.5919 31 1 -0.3633 -0.9326 -0.4316 32 1 0.0013 3.0615 1.5042 33 1 2.4580 -1.8813 -2.0860 34 1 0.7698 -1.9979 -1.4941 35 1 3.0750 -3.8938 -1.0869 36 1 1.3255 -4.2410 -1.1387 37 1 3.4723 -5.8963 0.3388 38 1 1.7332 -6.2719 0.2870 39 1 3.4641 -6.7824 2.8169 40 1 1.2983 -8.2616 1.2652 41 1 0.7188 -10.4219 2.3684 42 1 1.0338 -12.0641 4.1715 43 1 2.6771 -11.6432 5.9526 44 1 3.7168 -7.9216 4.1420 45 1 0.6558 -2.0713 1.3254 46 1 2.2763 -1.9428 2.0755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190725377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:48 Heat of formation + Delta-G solvation = -12.546842 kcal Electronic energy + Delta-G solvation = -26927.689644 eV Core-core repulsion = 22925.802017 eV Total energy + Delta-G solvation = -4001.887627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.13819 -39.88667 -39.33184 -37.54609 -35.15295 -34.82189 -31.94099 -31.28558 -30.85642 -29.79422 -28.41992 -27.01547 -26.07747 -23.95530 -23.26712 -22.45998 -22.25396 -19.95882 -19.34682 -18.93914 -17.85427 -17.08365 -16.87735 -16.56826 -16.31647 -15.93286 -15.83815 -15.46238 -14.91207 -14.38657 -14.21882 -14.17444 -13.92216 -13.41530 -13.33621 -13.01450 -12.89126 -12.75745 -12.58361 -12.37261 -12.24871 -12.13048 -11.91227 -11.55314 -11.45774 -11.32707 -10.93771 -10.83330 -10.54254 -10.52567 -10.48502 -10.29827 -9.92898 -9.87152 -9.66112 -9.14979 -8.62859 -8.45644 -8.34667 -6.83908 -5.79410 -3.27596 0.48565 0.88206 2.11308 2.78964 3.21444 3.35329 3.41726 3.43186 3.46059 3.91881 4.28067 4.37203 4.43511 4.60167 4.67817 4.77864 4.86022 4.96373 4.97780 5.07759 5.18553 5.27879 5.32113 5.33277 5.46570 5.52738 5.59360 5.67979 5.76452 5.78898 5.85394 5.88394 5.97511 6.02021 6.27554 6.30888 6.35371 6.46290 6.50063 6.57344 6.60319 6.73661 6.84154 7.28432 7.66403 7.74923 7.77823 8.30825 8.35522 9.15121 9.77508 10.26365 11.24870 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.001854 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.327961 B =15099.102663 C =15644.776720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.103 3.897 15 N -0.615 5.615 16 C 0.525 3.475 17 O -0.543 6.543 18 C -0.111 4.111 19 C -0.098 4.098 20 C -0.136 4.136 21 C -0.015 4.015 22 C -0.124 4.124 23 C -0.090 4.090 24 C -0.162 4.162 25 C 0.102 3.898 26 F -0.140 7.140 27 C -0.152 4.152 28 C 0.087 3.913 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.003 0.997 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.139 0.861 45 H 0.068 0.932 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -26.186 -1.525 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.020 4.020 15 N -0.349 5.349 16 C 0.313 3.687 17 O -0.421 6.421 18 C -0.150 4.150 19 C -0.116 4.116 20 C -0.154 4.154 21 C -0.015 4.015 22 C -0.142 4.142 23 C -0.108 4.108 24 C -0.180 4.180 25 C 0.083 3.917 26 F -0.119 7.119 27 C -0.171 4.171 28 C -0.038 4.038 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.157 0.843 45 H 0.086 0.914 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.572 -25.974 -0.714 26.110 hybrid contribution 0.397 0.993 0.063 1.072 sum 2.969 -24.980 -0.651 25.165 Atomic orbital electron populations 1.20817 0.82482 0.95605 0.99715 1.43859 1.01870 0.99884 1.84826 1.19213 0.98834 0.85191 1.35958 0.91178 1.25077 0.97988 0.98731 0.97624 1.70071 1.20115 1.27486 1.36969 0.86213 0.78757 0.83877 0.77422 1.21413 1.21711 1.20404 1.21502 0.96376 0.85739 0.90142 0.90369 1.23215 1.02877 0.92789 1.00560 1.22040 1.00672 0.99197 0.80101 1.48580 1.69230 1.09856 1.07250 1.20078 0.77293 0.84819 0.86507 1.90718 1.51968 1.84929 1.14449 1.20766 1.04301 0.92001 0.97978 1.23059 0.98280 0.92897 0.97350 1.21554 1.01262 0.94603 0.97946 1.18857 0.94525 0.94257 0.93877 1.21329 0.99945 0.93579 0.99369 1.20937 0.97044 0.99359 0.93428 1.21186 0.98384 0.97147 1.01322 1.17617 0.90799 0.95761 0.87511 1.91515 1.65282 1.94816 1.60248 1.21366 1.01073 1.00117 0.94547 1.23147 1.01015 0.79240 1.00361 0.94843 0.93938 0.97904 0.93572 0.90569 0.90505 0.91811 0.92083 0.87576 0.88351 0.86051 0.85769 0.85092 0.84928 0.84874 0.84293 0.91421 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 7.60 59.85 0.46 4.18 16 2 N -0.58 -13.96 2.96 -170.90 -0.51 -14.46 16 3 C -0.26 -6.97 9.60 -15.06 -0.14 -7.11 16 4 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 5 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 6 N -0.90 -25.88 10.78 55.49 0.60 -25.28 16 7 Si 0.91 21.43 29.58 -169.99 -5.03 16.40 16 8 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 C 0.17 3.34 3.55 -65.67 -0.23 3.11 16 12 H 0.08 1.53 7.95 -51.93 -0.41 1.12 16 13 C -0.15 -2.29 6.48 -24.90 -0.16 -2.46 16 14 C 0.10 1.24 6.48 -3.07 -0.02 1.23 16 15 N -0.61 -9.45 3.33 -170.38 -0.57 -10.02 16 16 C 0.53 7.97 7.84 -10.99 -0.09 7.89 16 17 O -0.54 -10.58 16.29 5.56 0.09 -10.49 16 18 C -0.11 -1.10 5.34 -29.04 -0.16 -1.26 16 19 C -0.10 -1.01 8.18 -36.22 -0.30 -1.31 16 20 C -0.14 -1.24 9.52 -37.57 -0.36 -1.60 16 21 C -0.01 -0.14 5.87 -105.02 -0.62 -0.76 16 22 C -0.12 -0.97 9.78 -39.18 -0.38 -1.35 16 23 C -0.09 -0.64 10.03 -39.65 -0.40 -1.03 16 24 C -0.16 -1.35 10.02 -39.43 -0.40 -1.74 16 25 C 0.10 1.06 7.29 -39.47 -0.29 0.78 16 26 F -0.14 -1.60 17.26 2.25 0.04 -1.56 16 27 C -0.15 -1.60 9.38 -39.13 -0.37 -1.97 16 28 C 0.09 1.65 6.47 -2.41 -0.02 1.63 16 29 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 30 H 0.04 1.07 7.39 -51.93 -0.38 0.69 16 31 H 0.00 0.05 6.33 -51.93 -0.33 -0.28 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.20 6.38 -51.93 -0.33 0.87 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.77 7.81 -51.93 -0.41 0.37 16 39 H 0.12 1.35 6.04 -52.48 -0.32 1.03 16 40 H 0.12 0.88 7.87 -52.49 -0.41 0.47 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.14 1.44 6.17 -52.48 -0.32 1.11 16 45 H 0.07 1.39 7.06 -51.93 -0.37 1.02 16 46 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -32.13 381.30 -9.76 -41.89 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.59 Total: -0.50 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.55 Total: -1.73 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.47 Total: -49.77 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.13 -9.76 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190725377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.347 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds