Wall clock time and date at job start Tue Mar 31 2020 16:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 120.00009 * 2 1 4 4 H 1.08001 * 120.00108 * 203.29480 * 3 2 1 5 5 C 1.38816 * 120.00285 * 23.30194 * 3 2 1 6 6 N 1.31614 * 119.99528 * 13.95735 * 5 3 2 7 7 Si 1.86804 * 119.99858 * 193.96465 * 5 3 2 8 8 H 1.48494 * 109.47150 * 89.99618 * 7 5 3 9 9 H 1.48506 * 109.46469 * 209.99428 * 7 5 3 10 10 H 1.48493 * 109.47162 * 329.99344 * 7 5 3 11 11 C 1.46503 * 119.99846 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.88424 * 182.42617 * 11 2 1 13 13 C 1.55151 * 111.00600 * 58.54609 * 11 2 1 14 14 C 1.54319 * 102.94257 * 206.38578 * 13 11 2 15 15 N 1.47024 * 107.27426 * 22.19412 * 14 13 11 16 16 C 1.34775 * 125.65172 * 181.02149 * 15 14 13 17 17 O 1.21280 * 120.00088 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00022 * 0.02562 * 16 15 14 19 19 C 1.50696 * 109.47179 * 179.97438 * 18 16 15 20 20 C 1.32562 * 119.99956 * 125.00240 * 19 18 16 21 21 C 1.47819 * 119.99771 * 180.02562 * 20 19 18 22 22 C 1.39571 * 120.12527 * 179.97438 * 21 20 19 23 23 C 1.37964 * 119.90457 * 179.70092 * 22 21 20 24 24 C 1.38328 * 120.17045 * 0.29977 * 23 22 21 25 25 C 1.38547 * 120.25703 * 359.97438 * 24 23 22 26 26 F 1.35108 * 119.94985 * 179.97438 * 25 24 23 27 27 C 1.38219 * 120.09427 * 359.97249 * 25 24 23 28 28 C 1.47430 * 108.69733 * 1.28474 * 15 14 13 29 29 H 1.08998 * 109.46643 * 275.16859 * 1 2 3 30 30 H 1.09002 * 109.46754 * 35.16510 * 1 2 3 31 31 H 1.08997 * 109.46903 * 155.16660 * 1 2 3 32 32 H 0.97002 * 119.99564 * 180.02562 * 6 5 3 33 33 H 1.09002 * 110.72224 * 88.01889 * 13 11 2 34 34 H 1.09003 * 110.86892 * 324.81904 * 13 11 2 35 35 H 1.08997 * 109.88664 * 262.77465 * 14 13 11 36 36 H 1.09001 * 110.00969 * 141.67928 * 14 13 11 37 37 H 1.09004 * 109.47247 * 60.00013 * 18 16 15 38 38 H 1.08997 * 109.47141 * 299.99927 * 18 16 15 39 39 H 1.08004 * 120.00018 * 305.00120 * 19 18 16 40 40 H 1.07993 * 120.00402 * 359.97438 * 20 19 18 41 41 H 1.07998 * 120.04594 * 359.97438 * 22 21 20 42 42 H 1.07995 * 119.91569 * 180.27799 * 23 22 21 43 43 H 1.07990 * 119.87015 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.08534 * 180.02562 * 27 25 24 45 45 H 1.09002 * 110.36633 * 94.48814 * 28 15 14 46 46 H 1.09001 * 110.36510 * 216.80258 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1637 1.2240 -0.3699 5 6 1.5406 2.3391 0.4755 6 7 0.4271 2.2557 1.1723 7 14 2.3013 4.0091 0.1264 8 1 1.7568 4.5445 -1.1472 9 1 1.9763 4.9424 1.2349 10 1 3.7752 3.8679 0.0141 11 6 2.1975 -1.2688 -0.0006 12 1 3.2729 -1.0966 0.0426 13 6 1.8210 -2.1278 -1.2365 14 6 2.0905 -3.5678 -0.7517 15 7 2.0433 -3.5497 0.7177 16 6 2.2484 -4.6105 1.5234 17 8 2.1842 -4.4791 2.7273 18 6 2.5576 -5.9600 0.9282 19 6 2.7427 -6.9665 2.0345 20 6 2.0200 -8.0777 2.0473 21 6 2.2011 -9.0646 3.1328 22 6 1.4413 -10.2352 3.1492 23 6 1.6184 -11.1561 4.1611 24 6 2.5427 -10.9193 5.1626 25 6 3.2966 -9.7569 5.1562 26 9 4.1972 -9.5317 6.1378 27 6 3.1287 -8.8275 4.1470 28 6 1.7283 -2.1803 1.1637 29 1 -0.3632 0.0926 1.0235 30 1 -0.3633 0.8401 -0.5919 31 1 -0.3633 -0.9326 -0.4316 32 1 0.0013 3.0615 1.5042 33 1 2.4580 -1.8813 -2.0860 34 1 0.7698 -1.9979 -1.4941 35 1 3.0750 -3.8938 -1.0869 36 1 1.3255 -4.2410 -1.1387 37 1 3.4723 -5.8963 0.3388 38 1 1.7332 -6.2719 0.2870 39 1 3.4641 -6.7824 2.8169 40 1 1.2983 -8.2616 1.2652 41 1 0.7188 -10.4219 2.3684 42 1 1.0338 -12.0641 4.1715 43 1 2.6771 -11.6432 5.9526 44 1 3.7168 -7.9216 4.1420 45 1 0.6558 -2.0713 1.3254 46 1 2.2763 -1.9428 2.0755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190725377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:47 Heat of formation + Delta-G solvation = -30.188465 kcal Electronic energy + Delta-G solvation = -26928.454642 eV Core-core repulsion = 22925.802017 eV Total energy + Delta-G solvation = -4002.652625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.95133 -41.09812 -40.02477 -38.94453 -36.55386 -35.90467 -33.54254 -32.29000 -31.52266 -31.19183 -29.65833 -28.13166 -27.96460 -25.27876 -24.23708 -23.74087 -23.08117 -21.01158 -20.70009 -19.95857 -18.95458 -18.63219 -18.01416 -17.52857 -17.22146 -17.02143 -16.65356 -16.52110 -16.51137 -15.73894 -15.29462 -15.06749 -14.83726 -14.78386 -14.60345 -14.38462 -14.23269 -13.74103 -13.67995 -13.55026 -13.39052 -13.13258 -13.05765 -12.79707 -12.78147 -12.48554 -12.40423 -12.21087 -12.16570 -12.04820 -11.98809 -11.81683 -11.39580 -11.24495 -10.86049 -10.65498 -9.84345 -9.64211 -9.14604 -8.80180 -7.85114 -5.35481 -0.19649 0.20857 1.40290 1.47207 1.47558 1.56696 1.64031 2.07254 2.50808 2.78453 3.22831 3.26540 3.54357 3.59363 3.63890 3.75099 3.94978 3.98728 4.11795 4.19574 4.19964 4.22649 4.35035 4.38374 4.47242 4.48405 4.59063 4.66177 4.76951 4.79945 4.86833 4.90471 5.03759 5.05947 5.13264 5.19841 5.24589 5.26902 5.32806 5.38616 5.44910 5.59028 5.63843 5.69483 5.79458 5.93997 6.30257 6.61227 7.11458 7.17183 7.82874 8.26929 9.17414 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.001854 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.327961 B =15099.102663 C =15644.776720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.601 5.601 3 C -0.266 4.266 4 H 0.076 0.924 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.283 1.283 9 H -0.299 1.299 10 H -0.267 1.267 11 C 0.164 3.836 12 H 0.072 0.928 13 C -0.141 4.141 14 C 0.106 3.894 15 N -0.615 5.615 16 C 0.517 3.483 17 O -0.599 6.599 18 C -0.093 4.093 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.036 4.036 22 C -0.117 4.117 23 C -0.086 4.086 24 C -0.161 4.161 25 C 0.073 3.927 26 F -0.155 7.155 27 C -0.172 4.172 28 C 0.096 3.904 29 H -0.002 1.002 30 H 0.017 0.983 31 H 0.038 0.962 32 H 0.248 0.752 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.151 0.849 44 H 0.125 0.875 45 H 0.047 0.953 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 -29.419 -4.446 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.322 5.322 3 C -0.396 4.396 4 H 0.094 0.906 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.800 3.200 8 H -0.209 1.209 9 H -0.226 1.226 10 H -0.192 1.192 11 C 0.055 3.945 12 H 0.090 0.910 13 C -0.180 4.180 14 C -0.016 4.016 15 N -0.349 5.349 16 C 0.308 3.692 17 O -0.480 6.480 18 C -0.131 4.131 19 C -0.144 4.144 20 C -0.137 4.137 21 C -0.036 4.036 22 C -0.135 4.135 23 C -0.103 4.103 24 C -0.180 4.180 25 C 0.054 3.946 26 F -0.134 7.134 27 C -0.191 4.191 28 C -0.029 4.029 29 H 0.016 0.984 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.173 0.827 41 H 0.179 0.821 42 H 0.186 0.814 43 H 0.169 0.831 44 H 0.143 0.857 45 H 0.065 0.935 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.461 -29.258 -3.687 29.592 hybrid contribution 0.454 1.857 1.027 2.170 sum 2.915 -27.401 -2.659 27.684 Atomic orbital electron populations 1.20496 0.82717 0.96210 0.97376 1.44055 1.02055 1.00964 1.85168 1.19589 0.99036 0.86393 1.34599 0.90648 1.25870 0.98784 1.02174 0.98116 1.70249 1.21717 1.27755 1.38693 0.85202 0.78484 0.79571 0.76792 1.20940 1.22621 1.19162 1.21679 0.95603 0.84592 0.92577 0.90950 1.23071 1.02901 0.93442 0.98619 1.22292 1.04048 0.97814 0.77404 1.48657 1.69048 1.08166 1.09013 1.21175 0.75764 0.86365 0.85887 1.90698 1.54215 1.85904 1.17170 1.20767 1.06804 0.87712 0.97860 1.23015 0.99306 0.94178 0.97895 1.21831 1.00428 0.93617 0.97864 1.19108 0.94989 0.95538 0.93975 1.21735 0.99375 0.92430 0.99957 1.21383 0.96334 1.00316 0.92291 1.21510 0.97851 0.96428 1.02170 1.17952 0.91820 0.97102 0.87744 1.91468 1.65988 1.95050 1.60851 1.21449 1.01997 1.00048 0.95625 1.22673 0.99060 0.82237 0.98969 0.98361 0.96419 0.94401 0.94272 0.88633 0.91000 0.88268 0.88399 0.84749 0.84887 0.88345 0.82745 0.82066 0.81429 0.83102 0.85678 0.93474 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.55 7.60 127.77 0.97 9.53 16 2 N -0.60 -29.19 2.96 -694.61 -2.05 -31.24 16 3 C -0.27 -14.32 9.60 84.04 0.81 -13.51 16 4 H 0.08 3.89 7.86 -2.91 -0.02 3.87 16 5 C -0.05 -3.02 5.08 84.86 0.43 -2.59 16 6 N -0.94 -55.96 10.78 21.65 0.23 -55.72 16 7 Si 0.97 44.86 29.58 68.60 2.03 46.89 16 8 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 9 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 11 C 0.16 6.28 3.55 46.46 0.16 6.45 16 12 H 0.07 2.82 7.95 -2.39 -0.02 2.80 16 13 C -0.14 -3.75 6.48 31.78 0.21 -3.54 16 14 C 0.11 2.07 6.48 86.73 0.56 2.63 16 15 N -0.62 -17.91 3.33 -811.36 -2.70 -20.61 16 16 C 0.52 15.15 7.84 87.66 0.69 15.84 16 17 O -0.60 -24.18 16.29 -3.03 -0.05 -24.23 16 18 C -0.09 -1.53 5.34 29.10 0.16 -1.37 16 19 C -0.13 -2.45 8.18 24.53 0.20 -2.25 16 20 C -0.12 -1.89 9.52 23.66 0.23 -1.67 16 21 C -0.04 -0.64 5.87 -20.12 -0.12 -0.76 16 22 C -0.12 -1.44 9.78 22.53 0.22 -1.22 16 23 C -0.09 -0.94 10.03 22.23 0.22 -0.72 16 24 C -0.16 -2.45 10.02 22.36 0.22 -2.22 16 25 C 0.07 1.55 7.29 22.34 0.16 1.72 16 26 F -0.15 -3.77 17.26 44.97 0.78 -3.00 16 27 C -0.17 -3.77 9.38 22.56 0.21 -3.56 16 28 C 0.10 3.76 6.47 86.93 0.56 4.32 16 29 H 0.00 -0.11 7.33 -2.39 -0.02 -0.12 16 30 H 0.02 0.90 7.39 -2.39 -0.02 0.89 16 31 H 0.04 1.52 6.33 -2.39 -0.02 1.51 16 32 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 2.01 6.38 -2.39 -0.02 2.00 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.13 1.32 7.81 -2.39 -0.02 1.30 16 39 H 0.10 2.34 6.04 -2.91 -0.02 2.32 16 40 H 0.16 1.45 7.87 -2.91 -0.02 1.42 16 41 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 42 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 43 H 0.15 1.65 8.06 -2.92 -0.02 1.63 16 44 H 0.13 2.93 6.17 -2.91 -0.02 2.92 16 45 H 0.05 2.01 7.06 -2.39 -0.02 1.99 16 46 H 0.04 1.63 8.03 -2.39 -0.02 1.61 16 Total: -1.00 -76.69 381.30 5.12 -71.58 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.98 Total: 9.25 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.90 Total: 7.07 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -4.52 Total: -107.57 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -76.69 5.12 -71.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190725377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.389 kcal (2) G-P(sol) polarization free energy of solvation -76.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds