Wall clock time and date at job start Tue Mar 31 2020 16:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 119.99985 * 2 1 4 4 H 1.07997 * 120.00222 * 153.96412 * 3 2 1 5 5 C 1.38811 * 119.99997 * 333.69523 * 3 2 1 6 6 N 1.31622 * 119.99705 * 351.78831 * 5 3 2 7 7 Si 1.86795 * 120.00330 * 171.78988 * 5 3 2 8 8 H 1.48501 * 109.46916 * 59.99724 * 7 5 3 9 9 H 1.48505 * 109.47200 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47160 * 299.99774 * 7 5 3 11 11 C 1.46501 * 119.99884 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.63642 * 179.29916 * 11 2 1 13 13 C 1.55155 * 110.72037 * 56.16397 * 11 2 1 14 14 C 1.54908 * 101.58146 * 206.13056 * 13 11 2 15 15 N 1.47426 * 104.83024 * 37.00935 * 14 13 11 16 16 C 1.34780 * 125.64982 * 155.90861 * 15 14 13 17 17 O 1.21281 * 120.00162 * 179.97438 * 16 15 14 18 18 C 1.50698 * 119.99806 * 359.97032 * 16 15 14 19 19 C 1.50701 * 109.47105 * 179.97438 * 18 16 15 20 20 C 1.32572 * 119.99766 * 127.88927 * 19 18 16 21 21 C 1.47811 * 119.99872 * 7.75168 * 20 19 18 22 22 C 1.39562 * 120.13331 * 38.49957 * 21 20 19 23 23 C 1.37958 * 119.91179 * 179.97438 * 22 21 20 24 24 C 1.38324 * 120.17001 * 359.97438 * 23 22 21 25 25 C 1.38544 * 120.25849 * 359.97438 * 24 23 22 26 26 F 1.35098 * 119.95454 * 180.02562 * 25 24 23 27 27 C 1.38220 * 120.08968 * 359.72167 * 25 24 23 28 28 C 1.47314 * 108.73503 * 335.71053 * 15 14 13 29 29 H 1.08996 * 109.46812 * 93.03357 * 1 2 3 30 30 H 1.09001 * 109.46664 * 213.03077 * 1 2 3 31 31 H 1.09003 * 109.47133 * 333.02720 * 1 2 3 32 32 H 0.96995 * 120.00006 * 180.02562 * 6 5 3 33 33 H 1.09002 * 111.00168 * 324.20197 * 13 11 2 34 34 H 1.09001 * 111.00681 * 88.05291 * 13 11 2 35 35 H 1.09004 * 110.36765 * 155.84386 * 14 13 11 36 36 H 1.08997 * 110.36892 * 278.06049 * 14 13 11 37 37 H 1.08999 * 109.47080 * 300.00274 * 18 16 15 38 38 H 1.09005 * 109.47518 * 59.99879 * 18 16 15 39 39 H 1.07989 * 120.00193 * 307.89112 * 19 18 16 40 40 H 1.07997 * 120.00113 * 187.75792 * 20 19 18 41 41 H 1.08010 * 120.03912 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.91348 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.86912 * 179.97438 * 24 23 22 44 44 H 1.08005 * 120.08364 * 180.29622 * 27 25 24 45 45 H 1.09001 * 110.06900 * 241.87223 * 28 15 14 46 46 H 1.09009 * 109.84849 * 120.61901 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1475 1.2334 0.4105 5 6 1.5635 2.3258 -0.5327 6 7 0.4216 2.2368 -1.1812 7 14 2.3951 3.9860 -0.3294 8 1 3.7396 3.9465 -0.9586 9 1 1.5731 5.0350 -0.9845 10 1 2.5340 4.2963 1.1162 11 6 2.1975 -1.2688 0.0006 12 1 3.2730 -1.0915 -0.0120 13 6 1.7722 -2.1487 -1.2044 14 6 2.0757 -3.5717 -0.6729 15 7 1.7187 -3.5246 0.7567 16 6 1.3782 -4.5844 1.5166 17 8 1.1027 -4.4277 2.6873 18 6 1.3397 -5.9641 0.9117 19 6 0.9340 -6.9631 1.9645 20 6 -0.0669 -7.8009 1.7325 21 6 -0.6722 -7.8744 0.3860 22 6 0.1329 -7.7815 -0.7501 23 6 -0.4368 -7.8511 -2.0046 24 6 -1.8039 -8.0133 -2.1393 25 6 -2.6097 -8.1074 -1.0162 26 9 -3.9441 -8.2662 -1.1548 27 6 -2.0495 -8.0452 0.2458 28 6 1.8001 -2.1283 1.2190 29 1 -0.3633 -0.0544 -1.0262 30 1 -0.3633 -0.8616 0.5602 31 1 -0.3633 0.9159 0.4661 32 1 0.0121 3.0332 -1.5538 33 1 0.7101 -2.0302 -1.4191 34 1 2.3746 -1.9236 -2.0846 35 1 1.4641 -4.3093 -1.1925 36 1 3.1337 -3.8042 -0.7939 37 1 0.6179 -5.9827 0.0951 38 1 2.3276 -6.2209 0.5292 39 1 1.4585 -6.9965 2.9078 40 1 -0.4401 -8.4297 2.5273 41 1 1.2008 -7.6561 -0.6473 42 1 0.1863 -7.7788 -2.8839 43 1 -2.2448 -8.0668 -3.1237 44 1 -2.6772 -8.1234 1.1212 45 1 2.5550 -2.0362 1.9998 46 1 0.8301 -1.8070 1.5987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190725378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:52 Heat of formation + Delta-G solvation = -4.517801 kcal Electronic energy + Delta-G solvation = -27925.210478 eV Core-core repulsion = 23923.671017 eV Total energy + Delta-G solvation = -4001.539462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.13297 -40.08023 -39.32516 -37.50761 -35.20150 -34.79285 -31.83324 -31.37504 -30.26944 -29.77853 -28.65450 -27.22721 -26.04456 -23.80578 -23.18098 -22.73211 -22.29398 -19.93718 -19.25069 -18.99892 -17.23082 -17.06699 -16.98687 -16.64209 -16.28333 -16.03281 -15.85115 -15.60968 -14.93765 -14.41543 -14.33962 -14.04111 -13.74998 -13.55891 -13.41785 -13.32440 -12.76505 -12.66161 -12.47761 -12.36535 -12.12424 -12.06310 -11.80793 -11.65338 -11.39803 -11.10090 -10.95599 -10.80998 -10.61344 -10.44762 -10.27638 -10.16048 -9.93159 -9.91096 -9.64773 -9.10126 -8.58759 -8.55818 -8.33961 -6.79777 -5.80558 -3.29178 0.59364 0.87830 2.00963 2.80411 3.22061 3.35566 3.36368 3.41266 3.42347 3.94369 4.35116 4.43772 4.48785 4.60590 4.66967 4.74892 4.82324 5.00272 5.03589 5.09047 5.22567 5.26103 5.37150 5.47151 5.52258 5.53750 5.56537 5.74478 5.75867 5.79182 5.89155 5.94067 5.99679 6.02925 6.28670 6.29309 6.38241 6.42888 6.54420 6.58894 6.63118 6.83750 6.86384 7.34414 7.65828 7.75534 7.78162 8.33317 8.37378 9.17055 9.78062 10.28635 11.25688 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.002524 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.006409 B =11089.806711 C =11931.858200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.068 0.932 5 C 0.007 3.993 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.172 3.828 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.099 3.901 15 N -0.612 5.612 16 C 0.526 3.474 17 O -0.547 6.547 18 C -0.127 4.127 19 C -0.096 4.096 20 C -0.138 4.138 21 C -0.022 4.022 22 C -0.129 4.129 23 C -0.089 4.089 24 C -0.157 4.157 25 C 0.100 3.900 26 F -0.140 7.140 27 C -0.147 4.147 28 C 0.086 3.914 29 H 0.021 0.979 30 H -0.003 1.003 31 H 0.056 0.944 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.060 0.940 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -23.268 -1.665 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.306 5.306 3 C -0.392 4.392 4 H 0.086 0.914 5 C -0.192 4.192 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.208 1.208 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.191 4.191 14 C -0.025 4.025 15 N -0.346 5.346 16 C 0.314 3.686 17 O -0.425 6.425 18 C -0.166 4.166 19 C -0.114 4.114 20 C -0.156 4.156 21 C -0.022 4.022 22 C -0.147 4.147 23 C -0.107 4.107 24 C -0.176 4.176 25 C 0.081 3.919 26 F -0.119 7.119 27 C -0.165 4.165 28 C -0.038 4.038 29 H 0.040 0.960 30 H 0.015 0.985 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.079 0.921 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.096 -23.048 -1.084 23.073 hybrid contribution 0.025 0.937 -0.086 0.941 sum -0.072 -22.111 -1.170 22.142 Atomic orbital electron populations 1.20780 0.82511 0.97100 0.97955 1.43828 1.01830 0.99849 1.85095 1.19173 1.00258 0.86108 1.33647 0.91404 1.25114 0.97662 0.98863 0.97570 1.70038 1.18530 1.28128 1.38266 0.86292 0.78675 0.83460 0.77812 1.20849 1.21584 1.20937 1.21318 0.96373 0.86099 0.90039 0.90350 1.23346 1.02908 0.92610 1.00224 1.22371 0.99665 0.99518 0.80901 1.48598 1.66956 1.07837 1.11245 1.20110 0.77023 0.85375 0.86055 1.90692 1.49490 1.85821 1.16471 1.21225 1.04334 0.91681 0.99376 1.22959 0.95965 0.93287 0.99204 1.21573 0.97373 1.02174 0.94494 1.18931 0.92120 0.97315 0.93819 1.21528 1.00503 1.01004 0.91674 1.20978 0.93983 0.97907 0.97793 1.21218 0.94364 1.03909 0.98103 1.17640 0.77440 1.02418 0.94401 1.91509 1.30688 1.93003 1.96705 1.21264 0.95369 1.03605 0.96301 1.22818 1.02228 0.79409 0.99343 0.96046 0.98508 0.92530 0.93546 0.90595 0.90343 0.91430 0.91558 0.87316 0.87867 0.85490 0.85345 0.84728 0.84659 0.84739 0.84563 0.92141 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.74 59.85 0.46 4.38 16 2 N -0.59 -14.17 2.93 -171.39 -0.50 -14.67 16 3 C -0.26 -6.98 9.58 -15.06 -0.14 -7.12 16 4 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 5 C 0.01 0.19 5.14 -17.43 -0.09 0.10 16 6 N -0.91 -25.76 10.71 55.49 0.59 -25.16 16 7 Si 0.91 21.37 29.56 -169.99 -5.03 16.34 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.17 3.33 3.43 -66.10 -0.23 3.11 16 12 H 0.08 1.49 7.95 -51.93 -0.41 1.08 16 13 C -0.15 -2.44 6.64 -24.58 -0.16 -2.60 16 14 C 0.10 1.24 6.69 -2.53 -0.02 1.22 16 15 N -0.61 -9.47 3.33 -170.29 -0.57 -10.04 16 16 C 0.53 8.05 7.84 -10.98 -0.09 7.96 16 17 O -0.55 -10.47 16.35 5.56 0.09 -10.38 16 18 C -0.13 -1.32 3.46 -29.04 -0.10 -1.42 16 19 C -0.10 -0.96 8.71 -36.21 -0.32 -1.28 16 20 C -0.14 -1.26 9.79 -37.57 -0.37 -1.62 16 21 C -0.02 -0.20 5.14 -105.02 -0.54 -0.74 16 22 C -0.13 -1.03 7.32 -39.19 -0.29 -1.32 16 23 C -0.09 -0.66 10.03 -39.65 -0.40 -1.06 16 24 C -0.16 -1.35 10.02 -39.44 -0.40 -1.75 16 25 C 0.10 1.02 7.29 -39.48 -0.29 0.74 16 26 F -0.14 -1.57 17.26 2.25 0.04 -1.53 16 27 C -0.15 -1.44 9.76 -39.12 -0.38 -1.83 16 28 C 0.09 1.59 6.46 -2.91 -0.02 1.57 16 29 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 30 H 0.00 -0.08 6.33 -51.93 -0.33 -0.41 16 31 H 0.06 1.51 6.88 -51.93 -0.36 1.15 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.08 1.37 7.07 -51.93 -0.37 1.00 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.08 4.56 -51.93 -0.24 0.84 16 38 H 0.10 0.80 7.98 -51.93 -0.41 0.38 16 39 H 0.13 1.27 8.04 -52.49 -0.42 0.85 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.84 6.36 -52.48 -0.33 0.51 16 42 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.51 6.18 -51.92 -0.32 1.19 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -31.81 375.70 -9.55 -41.35 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.48 Total: 0.11 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -3.36 Total: -1.67 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.47 Total: -49.88 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.81 -9.55 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190725378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.835 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds