Wall clock time and date at job start Tue Mar 31 2020 16:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 119.99985 * 2 1 4 4 H 1.07997 * 120.00222 * 153.96412 * 3 2 1 5 5 C 1.38811 * 119.99997 * 333.69523 * 3 2 1 6 6 N 1.31622 * 119.99705 * 351.78831 * 5 3 2 7 7 Si 1.86795 * 120.00330 * 171.78988 * 5 3 2 8 8 H 1.48501 * 109.46916 * 59.99724 * 7 5 3 9 9 H 1.48505 * 109.47200 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47160 * 299.99774 * 7 5 3 11 11 C 1.46501 * 119.99884 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.63642 * 179.29916 * 11 2 1 13 13 C 1.55155 * 110.72037 * 56.16397 * 11 2 1 14 14 C 1.54908 * 101.58146 * 206.13056 * 13 11 2 15 15 N 1.47426 * 104.83024 * 37.00935 * 14 13 11 16 16 C 1.34780 * 125.64982 * 155.90861 * 15 14 13 17 17 O 1.21281 * 120.00162 * 179.97438 * 16 15 14 18 18 C 1.50698 * 119.99806 * 359.97032 * 16 15 14 19 19 C 1.50701 * 109.47105 * 179.97438 * 18 16 15 20 20 C 1.32572 * 119.99766 * 127.88927 * 19 18 16 21 21 C 1.47811 * 119.99872 * 7.75168 * 20 19 18 22 22 C 1.39562 * 120.13331 * 38.49957 * 21 20 19 23 23 C 1.37958 * 119.91179 * 179.97438 * 22 21 20 24 24 C 1.38324 * 120.17001 * 359.97438 * 23 22 21 25 25 C 1.38544 * 120.25849 * 359.97438 * 24 23 22 26 26 F 1.35098 * 119.95454 * 180.02562 * 25 24 23 27 27 C 1.38220 * 120.08968 * 359.72167 * 25 24 23 28 28 C 1.47314 * 108.73503 * 335.71053 * 15 14 13 29 29 H 1.08996 * 109.46812 * 93.03357 * 1 2 3 30 30 H 1.09001 * 109.46664 * 213.03077 * 1 2 3 31 31 H 1.09003 * 109.47133 * 333.02720 * 1 2 3 32 32 H 0.96995 * 120.00006 * 180.02562 * 6 5 3 33 33 H 1.09002 * 111.00168 * 324.20197 * 13 11 2 34 34 H 1.09001 * 111.00681 * 88.05291 * 13 11 2 35 35 H 1.09004 * 110.36765 * 155.84386 * 14 13 11 36 36 H 1.08997 * 110.36892 * 278.06049 * 14 13 11 37 37 H 1.08999 * 109.47080 * 300.00274 * 18 16 15 38 38 H 1.09005 * 109.47518 * 59.99879 * 18 16 15 39 39 H 1.07989 * 120.00193 * 307.89112 * 19 18 16 40 40 H 1.07997 * 120.00113 * 187.75792 * 20 19 18 41 41 H 1.08010 * 120.03912 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.91348 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.86912 * 179.97438 * 24 23 22 44 44 H 1.08005 * 120.08364 * 180.29622 * 27 25 24 45 45 H 1.09001 * 110.06900 * 241.87223 * 28 15 14 46 46 H 1.09009 * 109.84849 * 120.61901 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1475 1.2334 0.4105 5 6 1.5635 2.3258 -0.5327 6 7 0.4216 2.2368 -1.1812 7 14 2.3951 3.9860 -0.3294 8 1 3.7396 3.9465 -0.9586 9 1 1.5731 5.0350 -0.9845 10 1 2.5340 4.2963 1.1162 11 6 2.1975 -1.2688 0.0006 12 1 3.2730 -1.0915 -0.0120 13 6 1.7722 -2.1487 -1.2044 14 6 2.0757 -3.5717 -0.6729 15 7 1.7187 -3.5246 0.7567 16 6 1.3782 -4.5844 1.5166 17 8 1.1027 -4.4277 2.6873 18 6 1.3397 -5.9641 0.9117 19 6 0.9340 -6.9631 1.9645 20 6 -0.0669 -7.8009 1.7325 21 6 -0.6722 -7.8744 0.3860 22 6 0.1329 -7.7815 -0.7501 23 6 -0.4368 -7.8511 -2.0046 24 6 -1.8039 -8.0133 -2.1393 25 6 -2.6097 -8.1074 -1.0162 26 9 -3.9441 -8.2662 -1.1548 27 6 -2.0495 -8.0452 0.2458 28 6 1.8001 -2.1283 1.2190 29 1 -0.3633 -0.0544 -1.0262 30 1 -0.3633 -0.8616 0.5602 31 1 -0.3633 0.9159 0.4661 32 1 0.0121 3.0332 -1.5538 33 1 0.7101 -2.0302 -1.4191 34 1 2.3746 -1.9236 -2.0846 35 1 1.4641 -4.3093 -1.1925 36 1 3.1337 -3.8042 -0.7939 37 1 0.6179 -5.9827 0.0951 38 1 2.3276 -6.2209 0.5292 39 1 1.4585 -6.9965 2.9078 40 1 -0.4401 -8.4297 2.5273 41 1 1.2008 -7.6561 -0.6473 42 1 0.1863 -7.7788 -2.8839 43 1 -2.2448 -8.0668 -3.1237 44 1 -2.6772 -8.1234 1.1212 45 1 2.5550 -2.0362 1.9998 46 1 0.8301 -1.8070 1.5987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190725378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:51 Heat of formation + Delta-G solvation = -21.441576 kcal Electronic energy + Delta-G solvation = -27925.944348 eV Core-core repulsion = 23923.671017 eV Total energy + Delta-G solvation = -4002.273332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.91062 -41.17930 -40.13996 -38.90278 -36.52827 -35.96792 -33.49304 -32.20159 -31.36768 -30.87303 -29.77423 -28.38889 -28.04641 -25.23527 -23.96847 -23.80269 -23.40571 -21.03948 -20.61664 -19.98276 -18.93153 -18.23532 -17.82413 -17.48337 -17.38257 -17.08511 -16.70155 -16.54757 -16.48334 -15.75858 -15.36968 -15.09919 -15.01319 -14.74722 -14.56246 -14.35875 -14.21636 -14.06149 -13.60434 -13.37176 -13.21062 -13.01231 -12.85451 -12.80859 -12.78721 -12.52171 -12.42610 -12.37322 -12.24478 -12.08242 -11.85127 -11.76326 -11.44802 -11.01969 -10.72204 -10.61286 -9.77399 -9.61175 -9.25688 -8.76976 -7.86181 -5.36326 -0.06930 0.22581 1.29083 1.48012 1.50423 1.56538 1.65155 2.08586 2.51362 2.69313 3.26989 3.29496 3.56929 3.62072 3.68775 3.86454 3.89068 3.95336 4.09549 4.15218 4.23074 4.29736 4.34412 4.41041 4.43175 4.49784 4.54121 4.69588 4.76413 4.80150 4.94727 4.96438 5.03451 5.12121 5.14842 5.18350 5.27474 5.32235 5.36103 5.37583 5.41244 5.60172 5.62326 5.66683 5.73681 5.95076 6.33123 6.61048 7.12516 7.17443 7.82478 8.29233 9.18999 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.002524 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.006409 B =11089.806711 C =11931.858200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.603 5.603 3 C -0.270 4.270 4 H 0.073 0.927 5 C -0.047 4.047 6 N -0.937 5.937 7 Si 0.971 3.029 8 H -0.271 1.271 9 H -0.296 1.296 10 H -0.281 1.281 11 C 0.165 3.835 12 H 0.084 0.916 13 C -0.143 4.143 14 C 0.107 3.893 15 N -0.615 5.615 16 C 0.519 3.481 17 O -0.594 6.594 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.129 4.129 21 C -0.037 4.037 22 C -0.126 4.126 23 C -0.084 4.084 24 C -0.161 4.161 25 C 0.074 3.926 26 F -0.154 7.154 27 C -0.161 4.161 28 C 0.097 3.903 29 H 0.003 0.997 30 H 0.012 0.988 31 H 0.024 0.976 32 H 0.249 0.751 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.138 0.862 41 H 0.160 0.840 42 H 0.168 0.832 43 H 0.148 0.852 44 H 0.136 0.864 45 H 0.054 0.946 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 -25.143 -3.083 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.324 5.324 3 C -0.399 4.399 4 H 0.091 0.909 5 C -0.243 4.243 6 N -0.582 5.582 7 Si 0.799 3.201 8 H -0.197 1.197 9 H -0.222 1.222 10 H -0.208 1.208 11 C 0.056 3.944 12 H 0.102 0.898 13 C -0.183 4.183 14 C -0.014 4.014 15 N -0.348 5.348 16 C 0.310 3.690 17 O -0.475 6.475 18 C -0.151 4.151 19 C -0.130 4.130 20 C -0.147 4.147 21 C -0.037 4.037 22 C -0.144 4.144 23 C -0.102 4.102 24 C -0.180 4.180 25 C 0.055 3.945 26 F -0.132 7.132 27 C -0.180 4.180 28 C -0.028 4.028 29 H 0.021 0.979 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.177 0.823 42 H 0.185 0.815 43 H 0.166 0.834 44 H 0.153 0.847 45 H 0.073 0.927 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.119 -24.974 -2.518 25.190 hybrid contribution -0.664 1.443 0.397 1.637 sum 1.455 -23.531 -2.122 23.671 Atomic orbital electron populations 1.20406 0.83261 0.96001 0.96555 1.43989 1.01714 1.01173 1.85563 1.19530 1.00384 0.87302 1.32730 0.90894 1.25854 0.98412 1.02126 0.97894 1.70197 1.19953 1.28455 1.39643 0.85296 0.77957 0.79302 0.77571 1.19657 1.22183 1.20753 1.21503 0.96155 0.84771 0.91941 0.89802 1.23191 1.01617 0.94421 0.99118 1.22547 1.02465 0.97646 0.78773 1.48694 1.67025 1.06476 1.12591 1.21082 0.75503 0.86854 0.85525 1.90673 1.51404 1.86662 1.18802 1.21263 1.06736 0.87991 0.99143 1.22934 0.96849 0.93938 0.99325 1.21702 0.96356 1.01803 0.94800 1.19081 0.92011 0.98116 0.94492 1.21861 1.01578 0.99724 0.91249 1.21367 0.93601 0.96384 0.98812 1.21522 0.95070 1.03218 0.98190 1.17947 0.77221 1.04027 0.95314 1.91470 1.31673 1.93311 1.96794 1.21382 0.96032 1.04182 0.96388 1.22413 1.00127 0.81611 0.98674 0.97902 0.97020 0.95701 0.94190 0.92783 0.89253 0.87899 0.88114 0.86299 0.84089 0.85964 0.84403 0.82263 0.81477 0.83380 0.84653 0.92745 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.19 7.74 127.77 0.99 10.18 16 2 N -0.60 -29.52 2.93 -696.15 -2.04 -31.56 16 3 C -0.27 -14.42 9.58 84.03 0.81 -13.62 16 4 H 0.07 3.74 7.84 -2.91 -0.02 3.72 16 5 C -0.05 -2.60 5.14 84.86 0.44 -2.17 16 6 N -0.94 -54.56 10.71 21.65 0.23 -54.33 16 7 Si 0.97 44.24 29.56 68.60 2.03 46.26 16 8 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 9 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 C 0.16 6.24 3.43 46.18 0.16 6.40 16 12 H 0.08 3.07 7.95 -2.39 -0.02 3.05 16 13 C -0.14 -4.33 6.64 31.98 0.21 -4.12 16 14 C 0.11 2.23 6.69 86.85 0.58 2.81 16 15 N -0.61 -17.58 3.33 -811.05 -2.70 -20.28 16 16 C 0.52 14.82 7.84 87.66 0.69 15.50 16 17 O -0.59 -22.60 16.35 -3.03 -0.05 -22.65 16 18 C -0.11 -1.91 3.46 29.10 0.10 -1.81 16 19 C -0.11 -1.99 8.71 24.53 0.21 -1.77 16 20 C -0.13 -2.09 9.79 23.65 0.23 -1.86 16 21 C -0.04 -0.61 5.14 -20.12 -0.10 -0.71 16 22 C -0.13 -1.52 7.32 22.52 0.16 -1.35 16 23 C -0.08 -0.92 10.03 22.22 0.22 -0.70 16 24 C -0.16 -2.42 10.02 22.36 0.22 -2.19 16 25 C 0.07 1.46 7.29 22.34 0.16 1.62 16 26 F -0.15 -3.47 17.26 44.97 0.78 -2.70 16 27 C -0.16 -3.05 9.76 22.57 0.22 -2.83 16 28 C 0.10 3.54 6.46 86.67 0.56 4.10 16 29 H 0.00 0.14 7.57 -2.39 -0.02 0.13 16 30 H 0.01 0.53 6.33 -2.39 -0.02 0.52 16 31 H 0.02 1.36 6.88 -2.39 -0.02 1.35 16 32 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.05 1.88 7.07 -2.39 -0.02 1.86 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.10 1.51 7.48 -2.39 -0.02 1.49 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.12 1.83 4.56 -2.39 -0.01 1.82 16 38 H 0.14 1.34 7.98 -2.38 -0.02 1.32 16 39 H 0.12 2.28 8.04 -2.92 -0.02 2.26 16 40 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 41 H 0.16 1.09 6.36 -2.91 -0.02 1.07 16 42 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 43 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 44 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 46 H 0.04 1.71 6.18 -2.38 -0.01 1.70 16 Total: -1.00 -72.40 375.70 5.10 -67.30 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.99 Total: 10.45 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 5.87 Total: 7.49 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -4.51 Total: -106.16 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -72.40 5.10 -67.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190725378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.860 kcal (2) G-P(sol) polarization free energy of solvation -72.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds