Wall clock time and date at job start Tue Mar 31 2020 16:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00086 * 2 1 4 4 H 1.08003 * 120.00010 * 203.26270 * 3 2 1 5 5 C 1.38810 * 120.00129 * 23.26625 * 3 2 1 6 6 N 1.31620 * 119.99801 * 13.82317 * 5 3 2 7 7 Si 1.86797 * 120.00358 * 193.82223 * 5 3 2 8 8 H 1.48508 * 109.47019 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47111 * 119.99808 * 7 5 3 10 10 H 1.48497 * 109.47336 * 239.99880 * 7 5 3 11 11 C 1.46498 * 119.99925 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.89063 * 183.88167 * 11 2 1 13 13 C 1.55164 * 111.03568 * 307.78124 * 11 2 1 14 14 C 1.54342 * 103.01972 * 153.39441 * 13 11 2 15 15 N 1.47019 * 107.26577 * 338.14429 * 14 13 11 16 16 C 1.34775 * 125.64806 * 178.85161 * 15 14 13 17 17 O 1.21285 * 119.99931 * 179.68926 * 16 15 14 18 18 C 1.50698 * 119.99913 * 359.68712 * 16 15 14 19 19 C 1.50698 * 109.47007 * 180.02562 * 18 16 15 20 20 C 1.32566 * 120.00324 * 125.00082 * 19 18 16 21 21 C 1.47816 * 120.00228 * 179.97438 * 20 19 18 22 22 C 1.39558 * 120.12885 * 180.02562 * 21 20 19 23 23 C 1.37963 * 119.90452 * 180.27549 * 22 21 20 24 24 C 1.38331 * 120.17171 * 359.51554 * 23 22 21 25 25 C 1.38546 * 120.25831 * 0.46122 * 24 23 22 26 26 F 1.35101 * 119.95501 * 179.76987 * 25 24 23 27 27 C 1.38224 * 120.08891 * 359.79498 * 25 24 23 28 28 C 1.47426 * 108.70315 * 358.58193 * 15 14 13 29 29 H 1.08994 * 109.46978 * 275.15913 * 1 2 3 30 30 H 1.09001 * 109.47078 * 35.15552 * 1 2 3 31 31 H 1.08991 * 109.47373 * 155.15642 * 1 2 3 32 32 H 0.97005 * 120.00384 * 179.97438 * 6 5 3 33 33 H 1.08993 * 110.71901 * 271.95638 * 13 11 2 34 34 H 1.08999 * 110.71670 * 35.05113 * 13 11 2 35 35 H 1.08991 * 109.99113 * 218.66752 * 14 13 11 36 36 H 1.08998 * 109.77306 * 97.49567 * 14 13 11 37 37 H 1.08994 * 109.46853 * 60.00160 * 18 16 15 38 38 H 1.09000 * 109.47288 * 299.99922 * 18 16 15 39 39 H 1.08004 * 120.00073 * 304.99618 * 19 18 16 40 40 H 1.07994 * 119.99709 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.04611 * 359.97438 * 22 21 20 42 42 H 1.08002 * 119.91137 * 179.74325 * 23 22 21 43 43 H 1.07994 * 119.87068 * 180.21194 * 24 23 22 44 44 H 1.07998 * 120.08524 * 179.97438 * 27 25 24 45 45 H 1.09004 * 110.36605 * 143.19573 * 28 15 14 46 46 H 1.09004 * 110.36658 * 265.51788 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1639 1.2239 -0.3694 5 6 1.5404 2.3392 0.4748 6 7 0.4250 2.2562 1.1688 7 14 2.3032 4.0089 0.1291 8 1 3.5449 3.8307 -0.6658 9 1 1.3420 4.8434 -0.6357 10 1 2.6288 4.6798 1.4132 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0974 0.0684 13 6 1.7076 -2.1952 1.1436 14 6 2.0203 -3.6075 0.6055 15 7 2.1184 -3.5051 -0.8578 16 6 2.4020 -4.5192 -1.6990 17 8 2.4518 -4.3198 -2.8943 18 6 2.6572 -5.9010 -1.1543 19 6 2.9491 -6.8438 -2.2931 20 6 4.0674 -7.5558 -2.2942 21 6 4.3534 -8.4810 -3.4110 22 6 5.5296 -9.2322 -3.4146 23 6 5.7946 -10.0901 -4.4620 24 6 4.8929 -10.2150 -5.5036 25 6 3.7229 -9.4730 -5.5068 26 9 2.8487 -9.5963 -6.5295 27 6 3.4490 -8.6063 -4.4655 28 6 1.8488 -2.1107 -1.2533 29 1 -0.3633 0.0924 1.0235 30 1 -0.3633 0.8402 -0.5917 31 1 -0.3634 -0.9325 -0.4317 32 1 -0.0007 3.0621 1.5010 33 1 2.2603 -1.9988 2.0622 34 1 0.6366 -2.0739 1.3062 35 1 1.2192 -4.2952 0.8761 36 1 2.9671 -3.9576 1.0169 37 1 1.7766 -6.2464 -0.6128 38 1 3.5117 -5.8729 -0.4782 39 1 2.2473 -6.9396 -3.1084 40 1 4.7694 -7.4598 -1.4792 41 1 6.2336 -9.1384 -2.6009 42 1 6.7068 -10.6683 -4.4669 43 1 5.1037 -10.8905 -6.3193 44 1 2.5372 -8.0276 -4.4683 45 1 2.4842 -1.8245 -2.0915 46 1 0.7976 -1.9866 -1.5133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190725380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:57 Heat of formation + Delta-G solvation = -12.851886 kcal Electronic energy + Delta-G solvation = -26898.520993 eV Core-core repulsion = 22896.620138 eV Total energy + Delta-G solvation = -4001.900855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.15895 -39.91814 -39.34952 -37.56537 -35.17128 -34.83422 -31.95198 -31.29074 -30.87218 -29.80749 -28.44472 -27.03825 -26.07452 -23.97527 -23.28775 -22.46518 -22.24920 -19.98367 -19.34644 -18.96063 -17.88576 -17.09062 -16.89564 -16.58188 -16.30010 -16.03701 -15.85813 -15.22896 -15.14660 -14.52823 -14.23169 -14.03047 -13.83587 -13.48950 -13.40821 -13.04917 -12.93602 -12.65697 -12.57733 -12.50922 -12.35080 -12.08275 -11.90684 -11.52443 -11.36059 -11.34081 -10.98190 -10.82137 -10.56285 -10.53759 -10.49587 -10.26389 -9.93679 -9.89864 -9.68851 -9.16636 -8.64049 -8.47232 -8.38413 -6.84308 -5.80290 -3.27876 0.46932 0.86603 2.09655 2.75199 3.18592 3.34336 3.42310 3.43827 3.45028 3.90171 4.26466 4.35694 4.43561 4.58114 4.65772 4.76540 4.84657 4.96050 4.98040 5.06218 5.19504 5.26867 5.31487 5.34505 5.48537 5.51149 5.56888 5.66413 5.73078 5.76877 5.85309 5.87920 5.97745 6.00804 6.26323 6.29336 6.34593 6.44688 6.49903 6.55959 6.60211 6.72526 6.83576 7.29366 7.64854 7.74051 7.75148 8.28669 8.33027 9.14851 9.77224 10.25708 11.24244 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.001813 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.987508 B =15442.480315 C =15644.247060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.152 4.152 14 C 0.102 3.898 15 N -0.614 5.614 16 C 0.526 3.474 17 O -0.545 6.545 18 C -0.111 4.111 19 C -0.098 4.098 20 C -0.135 4.135 21 C -0.015 4.015 22 C -0.124 4.124 23 C -0.089 4.089 24 C -0.162 4.162 25 C 0.102 3.898 26 F -0.140 7.140 27 C -0.153 4.153 28 C 0.084 3.916 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.002 0.998 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.139 0.861 45 H 0.072 0.928 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 -25.249 -4.131 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.192 4.192 14 C -0.022 4.022 15 N -0.348 5.348 16 C 0.314 3.686 17 O -0.422 6.422 18 C -0.150 4.150 19 C -0.116 4.116 20 C -0.153 4.153 21 C -0.015 4.015 22 C -0.142 4.142 23 C -0.107 4.107 24 C -0.180 4.180 25 C 0.083 3.917 26 F -0.119 7.119 27 C -0.171 4.171 28 C -0.040 4.040 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.157 0.843 45 H 0.090 0.910 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.182 -25.014 -4.785 26.461 hybrid contribution 0.061 0.936 -0.204 0.960 sum 7.242 -24.078 -4.989 25.634 Atomic orbital electron populations 1.20812 0.82468 0.95630 0.99665 1.43819 1.01859 0.99883 1.84961 1.19256 0.98694 0.85282 1.35737 0.91200 1.25034 0.97934 0.98642 0.97807 1.70076 1.20057 1.27314 1.37395 0.86168 0.78607 0.84100 0.77553 1.20220 1.21539 1.21686 1.21411 0.96410 0.85863 0.90058 0.90388 1.23216 1.02900 0.92587 1.00466 1.22082 1.00591 0.99499 0.80000 1.48527 1.68823 1.09880 1.07538 1.20072 0.76988 0.85462 0.86057 1.90712 1.52262 1.84084 1.15191 1.20762 1.04491 0.91858 0.97936 1.23051 0.97343 0.93712 0.97542 1.21563 0.98067 0.98090 0.97567 1.18856 0.93622 0.95406 0.93646 1.21331 0.96848 0.96788 0.99226 1.20942 0.98830 0.97951 0.93026 1.21189 0.94010 1.01754 1.01079 1.17616 0.89050 0.98759 0.86281 1.91512 1.68088 1.94936 1.57338 1.21363 1.01741 1.00094 0.93918 1.23036 1.01234 0.79203 1.00538 0.94739 0.93990 0.97977 0.93691 0.90440 0.90494 0.91973 0.91799 0.87581 0.88247 0.86086 0.85727 0.85067 0.84915 0.84871 0.84318 0.90987 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 7.57 59.85 0.45 4.18 16 2 N -0.58 -13.98 2.96 -171.03 -0.51 -14.49 16 3 C -0.26 -6.93 9.60 -15.06 -0.14 -7.07 16 4 H 0.07 1.83 7.87 -52.48 -0.41 1.42 16 5 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 6 N -0.90 -25.58 10.77 55.49 0.60 -24.99 16 7 Si 0.91 21.44 29.58 -169.99 -5.03 16.42 16 8 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 C 0.17 3.34 3.53 -65.78 -0.23 3.11 16 12 H 0.08 1.53 7.96 -51.93 -0.41 1.11 16 13 C -0.15 -2.38 6.50 -24.88 -0.16 -2.55 16 14 C 0.10 1.25 6.49 -3.06 -0.02 1.23 16 15 N -0.61 -9.22 3.33 -170.51 -0.57 -9.79 16 16 C 0.53 7.76 7.84 -10.99 -0.09 7.67 16 17 O -0.54 -10.23 16.29 5.55 0.09 -10.14 16 18 C -0.11 -1.08 5.34 -29.04 -0.16 -1.23 16 19 C -0.10 -0.99 8.18 -36.22 -0.30 -1.29 16 20 C -0.13 -1.21 9.52 -37.57 -0.36 -1.56 16 21 C -0.02 -0.14 5.87 -105.02 -0.62 -0.76 16 22 C -0.12 -0.94 9.78 -39.19 -0.38 -1.33 16 23 C -0.09 -0.62 10.03 -39.65 -0.40 -1.02 16 24 C -0.16 -1.31 10.02 -39.43 -0.40 -1.71 16 25 C 0.10 1.04 7.29 -39.47 -0.29 0.75 16 26 F -0.14 -1.57 17.26 2.25 0.04 -1.53 16 27 C -0.15 -1.56 9.38 -39.12 -0.37 -1.93 16 28 C 0.08 1.53 6.46 -2.53 -0.02 1.51 16 29 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 30 H 0.04 1.08 7.38 -51.93 -0.38 0.69 16 31 H 0.00 0.04 6.38 -51.93 -0.33 -0.29 16 32 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.30 6.99 -51.93 -0.36 0.93 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.77 7.81 -51.93 -0.41 0.36 16 39 H 0.12 1.31 6.04 -52.48 -0.32 0.99 16 40 H 0.12 0.87 7.87 -52.49 -0.41 0.45 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.14 1.39 6.17 -52.49 -0.32 1.06 16 45 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 46 H 0.07 1.29 6.43 -51.93 -0.33 0.96 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -31.78 381.30 -9.77 -41.55 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.59 Total: -0.82 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.55 Total: -1.96 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.47 Total: -49.26 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.78 -9.77 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190725380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.696 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds