Wall clock time and date at job start Tue Mar 31 2020 16:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00086 * 2 1 4 4 H 1.08003 * 120.00010 * 203.26270 * 3 2 1 5 5 C 1.38810 * 120.00129 * 23.26625 * 3 2 1 6 6 N 1.31620 * 119.99801 * 13.82317 * 5 3 2 7 7 Si 1.86797 * 120.00358 * 193.82223 * 5 3 2 8 8 H 1.48508 * 109.47019 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.47111 * 119.99808 * 7 5 3 10 10 H 1.48497 * 109.47336 * 239.99880 * 7 5 3 11 11 C 1.46498 * 119.99925 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.89063 * 183.88167 * 11 2 1 13 13 C 1.55164 * 111.03568 * 307.78124 * 11 2 1 14 14 C 1.54342 * 103.01972 * 153.39441 * 13 11 2 15 15 N 1.47019 * 107.26577 * 338.14429 * 14 13 11 16 16 C 1.34775 * 125.64806 * 178.85161 * 15 14 13 17 17 O 1.21285 * 119.99931 * 179.68926 * 16 15 14 18 18 C 1.50698 * 119.99913 * 359.68712 * 16 15 14 19 19 C 1.50698 * 109.47007 * 180.02562 * 18 16 15 20 20 C 1.32566 * 120.00324 * 125.00082 * 19 18 16 21 21 C 1.47816 * 120.00228 * 179.97438 * 20 19 18 22 22 C 1.39558 * 120.12885 * 180.02562 * 21 20 19 23 23 C 1.37963 * 119.90452 * 180.27549 * 22 21 20 24 24 C 1.38331 * 120.17171 * 359.51554 * 23 22 21 25 25 C 1.38546 * 120.25831 * 0.46122 * 24 23 22 26 26 F 1.35101 * 119.95501 * 179.76987 * 25 24 23 27 27 C 1.38224 * 120.08891 * 359.79498 * 25 24 23 28 28 C 1.47426 * 108.70315 * 358.58193 * 15 14 13 29 29 H 1.08994 * 109.46978 * 275.15913 * 1 2 3 30 30 H 1.09001 * 109.47078 * 35.15552 * 1 2 3 31 31 H 1.08991 * 109.47373 * 155.15642 * 1 2 3 32 32 H 0.97005 * 120.00384 * 179.97438 * 6 5 3 33 33 H 1.08993 * 110.71901 * 271.95638 * 13 11 2 34 34 H 1.08999 * 110.71670 * 35.05113 * 13 11 2 35 35 H 1.08991 * 109.99113 * 218.66752 * 14 13 11 36 36 H 1.08998 * 109.77306 * 97.49567 * 14 13 11 37 37 H 1.08994 * 109.46853 * 60.00160 * 18 16 15 38 38 H 1.09000 * 109.47288 * 299.99922 * 18 16 15 39 39 H 1.08004 * 120.00073 * 304.99618 * 19 18 16 40 40 H 1.07994 * 119.99709 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.04611 * 359.97438 * 22 21 20 42 42 H 1.08002 * 119.91137 * 179.74325 * 23 22 21 43 43 H 1.07994 * 119.87068 * 180.21194 * 24 23 22 44 44 H 1.07998 * 120.08524 * 179.97438 * 27 25 24 45 45 H 1.09004 * 110.36605 * 143.19573 * 28 15 14 46 46 H 1.09004 * 110.36658 * 265.51788 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1639 1.2239 -0.3694 5 6 1.5404 2.3392 0.4748 6 7 0.4250 2.2562 1.1688 7 14 2.3032 4.0089 0.1291 8 1 3.5449 3.8307 -0.6658 9 1 1.3420 4.8434 -0.6357 10 1 2.6288 4.6798 1.4132 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0974 0.0684 13 6 1.7076 -2.1952 1.1436 14 6 2.0203 -3.6075 0.6055 15 7 2.1184 -3.5051 -0.8578 16 6 2.4020 -4.5192 -1.6990 17 8 2.4518 -4.3198 -2.8943 18 6 2.6572 -5.9010 -1.1543 19 6 2.9491 -6.8438 -2.2931 20 6 4.0674 -7.5558 -2.2942 21 6 4.3534 -8.4810 -3.4110 22 6 5.5296 -9.2322 -3.4146 23 6 5.7946 -10.0901 -4.4620 24 6 4.8929 -10.2150 -5.5036 25 6 3.7229 -9.4730 -5.5068 26 9 2.8487 -9.5963 -6.5295 27 6 3.4490 -8.6063 -4.4655 28 6 1.8488 -2.1107 -1.2533 29 1 -0.3633 0.0924 1.0235 30 1 -0.3633 0.8402 -0.5917 31 1 -0.3634 -0.9325 -0.4317 32 1 -0.0007 3.0621 1.5010 33 1 2.2603 -1.9988 2.0622 34 1 0.6366 -2.0739 1.3062 35 1 1.2192 -4.2952 0.8761 36 1 2.9671 -3.9576 1.0169 37 1 1.7766 -6.2464 -0.6128 38 1 3.5117 -5.8729 -0.4782 39 1 2.2473 -6.9396 -3.1084 40 1 4.7694 -7.4598 -1.4792 41 1 6.2336 -9.1384 -2.6009 42 1 6.7068 -10.6683 -4.4669 43 1 5.1037 -10.8905 -6.3193 44 1 2.5372 -8.0276 -4.4683 45 1 2.4842 -1.8245 -2.0915 46 1 0.7976 -1.9866 -1.5133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190725380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:56 Heat of formation + Delta-G solvation = -29.734684 kcal Electronic energy + Delta-G solvation = -26899.253086 eV Core-core repulsion = 22896.620138 eV Total energy + Delta-G solvation = -4002.632948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.94766 -41.10317 -40.02126 -38.94723 -36.55739 -35.89878 -33.53470 -32.28408 -31.51810 -31.21004 -29.66651 -28.13836 -27.95640 -25.27646 -24.23317 -23.74586 -23.07948 -21.02227 -20.68922 -19.95150 -18.96165 -18.64414 -18.01046 -17.52013 -17.21864 -17.01250 -16.64925 -16.58868 -16.33206 -15.91495 -15.22135 -15.11704 -14.81112 -14.79692 -14.59618 -14.39411 -14.19953 -13.89460 -13.59570 -13.54130 -13.44177 -13.07889 -12.93527 -12.85327 -12.77759 -12.50222 -12.40652 -12.16684 -12.14629 -12.08679 -11.98990 -11.83807 -11.43450 -11.22745 -10.86686 -10.66645 -9.83853 -9.64797 -9.14016 -8.79759 -7.85611 -5.34738 -0.19165 0.21311 1.40808 1.45098 1.47816 1.57327 1.64055 2.06628 2.50383 2.78848 3.23208 3.26513 3.54624 3.59717 3.62305 3.75444 3.94363 3.98990 4.10465 4.19760 4.20134 4.23896 4.35457 4.36748 4.46539 4.47772 4.58991 4.66626 4.73964 4.80919 4.87277 4.91310 5.02594 5.06389 5.13613 5.21015 5.23940 5.27164 5.31041 5.38921 5.43882 5.59811 5.63277 5.69340 5.79825 5.94301 6.30309 6.60108 7.11670 7.16579 7.82636 8.26488 9.17220 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.001813 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.987508 B =15442.480315 C =15644.247060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.602 5.602 3 C -0.267 4.267 4 H 0.069 0.931 5 C -0.048 4.048 6 N -0.933 5.933 7 Si 0.967 3.033 8 H -0.269 1.269 9 H -0.293 1.293 10 H -0.289 1.289 11 C 0.165 3.835 12 H 0.073 0.927 13 C -0.143 4.143 14 C 0.109 3.891 15 N -0.615 5.615 16 C 0.520 3.480 17 O -0.595 6.595 18 C -0.095 4.095 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.036 4.036 22 C -0.118 4.118 23 C -0.086 4.086 24 C -0.161 4.161 25 C 0.073 3.927 26 F -0.154 7.154 27 C -0.172 4.172 28 C 0.096 3.904 29 H 0.014 0.986 30 H 0.010 0.990 31 H 0.028 0.972 32 H 0.249 0.751 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.100 0.900 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.168 0.832 43 H 0.151 0.849 44 H 0.127 0.873 45 H 0.048 0.952 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.736 -27.844 -2.660 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.324 5.324 3 C -0.397 4.397 4 H 0.087 0.913 5 C -0.244 4.244 6 N -0.579 5.579 7 Si 0.795 3.205 8 H -0.193 1.193 9 H -0.220 1.220 10 H -0.216 1.216 11 C 0.057 3.943 12 H 0.091 0.909 13 C -0.182 4.182 14 C -0.013 4.013 15 N -0.348 5.348 16 C 0.311 3.689 17 O -0.476 6.476 18 C -0.134 4.134 19 C -0.143 4.143 20 C -0.138 4.138 21 C -0.036 4.036 22 C -0.135 4.135 23 C -0.104 4.104 24 C -0.180 4.180 25 C 0.054 3.946 26 F -0.133 7.133 27 C -0.190 4.190 28 C -0.030 4.030 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.118 0.882 40 H 0.171 0.829 41 H 0.179 0.821 42 H 0.185 0.815 43 H 0.169 0.831 44 H 0.144 0.856 45 H 0.067 0.933 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.640 -27.660 -3.296 29.477 hybrid contribution -0.627 1.639 -0.741 1.905 sum 9.014 -26.021 -4.037 27.832 Atomic orbital electron populations 1.20497 0.82703 0.95553 0.97964 1.43977 1.02021 1.00967 1.85400 1.19538 0.98725 0.86673 1.34766 0.91296 1.25741 0.98679 1.01710 0.98260 1.70212 1.21333 1.27683 1.38678 0.85216 0.77911 0.80159 0.77208 1.19316 1.22023 1.21567 1.21544 0.95784 0.84857 0.92159 0.90860 1.23058 1.02030 0.93863 0.99290 1.22238 1.03740 0.97593 0.77755 1.48609 1.68808 1.08420 1.08987 1.21089 0.75472 0.86971 0.85369 1.90694 1.54312 1.85016 1.17612 1.20771 1.06932 0.87675 0.97973 1.23007 0.98040 0.95321 0.97898 1.21829 0.97596 0.96707 0.97660 1.19101 0.94367 0.96427 0.93686 1.21729 0.96260 0.95561 0.99999 1.21379 0.99459 0.97549 0.91967 1.21508 0.93194 1.01237 1.02047 1.17943 0.90066 1.00176 0.86395 1.91466 1.68753 1.95158 1.57948 1.21448 1.02066 1.00604 0.94916 1.22603 0.99676 0.81585 0.99149 0.96733 0.97130 0.95341 0.94154 0.89637 0.91735 0.88720 0.88202 0.84921 0.84996 0.88188 0.82862 0.82149 0.81499 0.83128 0.85555 0.93338 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.58 7.57 127.77 0.97 9.55 16 2 N -0.60 -29.28 2.96 -695.03 -2.06 -31.34 16 3 C -0.27 -14.43 9.60 84.03 0.81 -13.62 16 4 H 0.07 3.65 7.87 -2.91 -0.02 3.63 16 5 C -0.05 -2.66 5.08 84.86 0.43 -2.23 16 6 N -0.93 -54.07 10.77 21.65 0.23 -53.84 16 7 Si 0.97 44.74 29.58 68.60 2.03 46.77 16 8 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 9 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 C 0.17 6.33 3.53 46.39 0.16 6.49 16 12 H 0.07 2.85 7.96 -2.39 -0.02 2.83 16 13 C -0.14 -4.20 6.50 31.79 0.21 -3.99 16 14 C 0.11 2.23 6.49 86.74 0.56 2.79 16 15 N -0.61 -17.28 3.33 -811.77 -2.70 -19.98 16 16 C 0.52 14.53 7.84 87.66 0.69 15.22 16 17 O -0.60 -22.70 16.29 -3.05 -0.05 -22.75 16 18 C -0.09 -1.51 5.34 29.10 0.16 -1.36 16 19 C -0.12 -2.33 8.18 24.53 0.20 -2.13 16 20 C -0.12 -1.84 9.52 23.65 0.23 -1.62 16 21 C -0.04 -0.61 5.87 -20.12 -0.12 -0.73 16 22 C -0.12 -1.41 9.78 22.52 0.22 -1.19 16 23 C -0.09 -0.92 10.03 22.23 0.22 -0.69 16 24 C -0.16 -2.38 10.02 22.37 0.22 -2.15 16 25 C 0.07 1.51 7.29 22.34 0.16 1.67 16 26 F -0.15 -3.65 17.26 44.97 0.78 -2.87 16 27 C -0.17 -3.62 9.38 22.57 0.21 -3.41 16 28 C 0.10 3.48 6.46 86.85 0.56 4.04 16 29 H 0.01 0.75 7.33 -2.39 -0.02 0.73 16 30 H 0.01 0.54 7.38 -2.39 -0.02 0.52 16 31 H 0.03 1.19 6.38 -2.39 -0.02 1.17 16 32 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.06 2.08 6.99 -2.39 -0.02 2.06 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.13 1.30 7.81 -2.39 -0.02 1.28 16 39 H 0.10 2.26 6.04 -2.91 -0.02 2.25 16 40 H 0.15 1.40 7.87 -2.91 -0.02 1.38 16 41 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 43 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 44 H 0.13 2.83 6.17 -2.91 -0.02 2.81 16 45 H 0.05 1.96 8.04 -2.38 -0.02 1.94 16 46 H 0.05 2.04 6.43 -2.38 -0.02 2.02 16 Total: -1.00 -73.57 381.30 5.11 -68.47 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.98 Total: 8.90 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 5.89 Total: 6.64 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.52 Total: -105.16 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -73.57 5.11 -68.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190725380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.730 kcal (2) G-P(sol) polarization free energy of solvation -73.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds