Wall clock time and date at job start Tue Mar 31 2020 16:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36943 * 120.00263 * 2 1 4 4 H 1.07993 * 120.00215 * 201.72676 * 3 2 1 5 5 C 1.38810 * 119.99361 * 21.72247 * 3 2 1 6 6 N 1.31615 * 120.00281 * 13.65335 * 5 3 2 7 7 Si 1.86804 * 119.99810 * 193.65221 * 5 3 2 8 8 H 1.48498 * 109.47008 * 90.00088 * 7 5 3 9 9 H 1.48495 * 109.47236 * 210.00422 * 7 5 3 10 10 H 1.48504 * 109.46836 * 330.00048 * 7 5 3 11 11 C 1.46504 * 120.00217 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64173 * 176.85560 * 11 2 1 13 13 C 1.55157 * 110.87060 * 53.60445 * 11 2 1 14 14 C 1.55127 * 101.48401 * 205.90152 * 13 11 2 15 15 N 1.47417 * 104.72432 * 37.29980 * 14 13 11 16 16 C 1.34777 * 125.65047 * 155.81586 * 15 14 13 17 17 O 1.21278 * 120.00006 * 179.68665 * 16 15 14 18 18 C 1.50696 * 119.99716 * 359.69308 * 16 15 14 19 19 C 1.50707 * 109.46905 * 179.97438 * 18 16 15 20 20 C 1.32588 * 119.99736 * 125.00001 * 19 18 16 21 21 C 1.47788 * 119.99508 * 179.97438 * 20 19 18 22 22 C 1.39535 * 120.15335 * 359.95495 * 21 20 19 23 23 C 1.37952 * 119.87719 * 180.02562 * 22 21 20 24 24 C 1.38387 * 120.19680 * 359.97438 * 23 22 21 25 25 C 1.38276 * 120.31037 * 0.02562 * 24 23 22 26 26 C 1.38240 * 120.11746 * 359.97438 * 25 24 23 27 27 F 1.35100 * 120.09676 * 179.97438 * 26 25 24 28 28 C 1.47019 * 108.70233 * 335.55135 * 15 14 13 29 29 H 1.09000 * 109.47408 * 274.45987 * 1 2 3 30 30 H 1.08996 * 109.47184 * 34.45550 * 1 2 3 31 31 H 1.08997 * 109.47111 * 154.45856 * 1 2 3 32 32 H 0.97007 * 119.99887 * 179.97438 * 6 5 3 33 33 H 1.08992 * 111.00860 * 324.14423 * 13 11 2 34 34 H 1.08997 * 111.00135 * 87.95562 * 13 11 2 35 35 H 1.09003 * 110.49792 * 278.45499 * 14 13 11 36 36 H 1.09000 * 110.34438 * 156.06667 * 14 13 11 37 37 H 1.09002 * 109.47311 * 60.00329 * 18 16 15 38 38 H 1.08999 * 109.47457 * 299.99524 * 18 16 15 39 39 H 1.08001 * 119.99765 * 304.99234 * 19 18 16 40 40 H 1.07994 * 120.00066 * 359.97438 * 20 19 18 41 41 H 1.07999 * 120.06166 * 0.04173 * 22 21 20 42 42 H 1.07997 * 119.90409 * 180.25287 * 23 22 21 43 43 H 1.07996 * 119.84735 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.93536 * 179.97438 * 25 24 23 45 45 H 1.08995 * 109.88521 * 120.70475 * 28 15 14 46 46 H 1.09003 * 109.88608 * 241.87029 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1721 1.2191 -0.3462 5 6 1.5295 2.3453 0.4449 6 7 0.3966 2.2717 1.1108 7 14 2.3029 4.0101 0.0987 8 1 1.7957 4.5319 -1.1958 9 1 1.9487 4.9564 1.1869 10 1 3.7793 3.8653 0.0299 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0922 -0.0564 13 6 1.7289 -2.1771 -1.1680 14 6 2.0620 -3.5875 -0.6147 15 7 1.7543 -3.5076 0.8248 16 6 1.4460 -4.5503 1.6212 17 8 1.2154 -4.3673 2.7977 18 6 1.3882 -5.9436 1.0498 19 6 1.0259 -6.9190 2.1400 20 6 -0.0164 -7.7245 1.9892 21 6 -0.3714 -8.6814 3.0581 22 6 0.3887 -8.7404 4.2268 23 6 0.0525 -9.6361 5.2206 24 6 -1.0362 -10.4755 5.0620 25 6 -1.7949 -10.4238 3.9071 26 6 -1.4697 -9.5311 2.9029 27 9 -2.2109 -9.4812 1.7746 28 6 1.8454 -2.1030 1.2491 29 1 -0.3634 0.0799 1.0245 30 1 -0.3633 0.8473 -0.5814 31 1 -0.3633 -0.9272 -0.4431 32 1 -0.0366 3.0820 1.4220 33 1 0.6592 -2.0656 -1.3446 34 1 2.2962 -1.9706 -2.0755 35 1 3.1169 -3.8171 -0.7649 36 1 1.4370 -4.3403 -1.0951 37 1 2.3615 -6.2072 0.6357 38 1 0.6357 -5.9824 0.2622 39 1 1.6153 -6.9618 3.0440 40 1 -0.6059 -7.6814 1.0854 41 1 1.2384 -8.0859 4.3531 42 1 0.6381 -9.6794 6.1270 43 1 -1.2945 -11.1743 5.8438 44 1 -2.6431 -11.0819 3.7895 45 1 0.8886 -1.7757 1.6558 46 1 2.6272 -1.9927 2.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190890392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:01 Heat of formation + Delta-G solvation = -9.704947 kcal Electronic energy + Delta-G solvation = -27173.816578 eV Core-core repulsion = 23172.052185 eV Total energy + Delta-G solvation = -4001.764393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.12425 -39.84494 -39.26462 -37.53521 -35.19401 -34.79586 -31.92498 -31.26938 -30.83271 -29.73094 -28.38405 -26.95268 -26.04780 -23.95876 -23.26691 -22.43586 -22.28943 -19.86556 -19.24729 -18.94264 -17.97801 -17.07229 -16.87778 -16.63334 -16.29567 -15.87949 -15.83525 -15.20601 -14.93570 -14.50419 -14.28462 -14.13513 -13.57665 -13.46541 -13.35982 -13.21040 -12.81667 -12.69986 -12.56697 -12.32751 -12.20212 -12.07072 -11.80615 -11.54554 -11.36048 -11.27079 -10.93721 -10.83235 -10.59282 -10.55873 -10.46102 -10.28772 -9.90649 -9.84217 -9.62957 -9.16623 -8.59419 -8.37266 -8.29894 -6.85246 -5.77840 -3.24731 0.50310 0.89198 2.16926 2.83272 3.24971 3.36109 3.42099 3.43813 3.45951 3.93232 4.30017 4.38834 4.44440 4.58585 4.66642 4.82929 4.90865 4.96357 4.97735 5.09840 5.22803 5.29628 5.33139 5.39504 5.49892 5.55767 5.58523 5.70685 5.76284 5.82793 5.87363 5.88785 5.97943 6.08578 6.31668 6.34526 6.36847 6.45109 6.51697 6.58584 6.66140 6.81612 6.85202 7.32842 7.69332 7.76555 7.81084 8.31928 8.39244 9.16568 9.79201 10.27568 11.26717 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024571 B = 0.001932 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.270332 B =14486.165899 C =14675.137894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.100 3.900 15 N -0.614 5.614 16 C 0.525 3.475 17 O -0.543 6.543 18 C -0.110 4.110 19 C -0.099 4.099 20 C -0.133 4.133 21 C -0.076 4.076 22 C -0.088 4.088 23 C -0.127 4.127 24 C -0.097 4.097 25 C -0.153 4.153 26 C 0.101 3.899 27 F -0.137 7.137 28 C 0.086 3.914 29 H 0.030 0.970 30 H 0.045 0.955 31 H 0.002 0.998 32 H 0.254 0.746 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.072 0.928 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 -25.767 0.982 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.548 5.548 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.023 4.023 15 N -0.348 5.348 16 C 0.313 3.687 17 O -0.421 6.421 18 C -0.150 4.150 19 C -0.117 4.117 20 C -0.151 4.151 21 C -0.077 4.077 22 C -0.106 4.106 23 C -0.145 4.145 24 C -0.115 4.115 25 C -0.172 4.172 26 C 0.082 3.918 27 F -0.115 7.115 28 C -0.038 4.038 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.154 0.846 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.091 0.909 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.002 -25.524 1.687 25.580 hybrid contribution 0.098 0.970 -0.307 1.022 sum 0.097 -24.554 1.380 24.593 Atomic orbital electron populations 1.20810 0.82398 0.95737 0.99521 1.43935 1.01928 0.99920 1.84831 1.19236 0.97880 0.84964 1.37030 0.91088 1.25050 0.97831 0.98644 0.98020 1.70087 1.18824 1.27203 1.38672 0.86208 0.78718 0.83862 0.77440 1.21441 1.21735 1.20429 1.21353 0.96367 0.85963 0.90114 0.90385 1.23380 1.02836 0.93240 0.99928 1.22382 1.00039 0.99159 0.80734 1.48603 1.68089 1.07991 1.10118 1.20092 0.77103 0.85508 0.86043 1.90708 1.49759 1.85423 1.16193 1.20758 1.04434 0.91549 0.98256 1.22960 0.96851 0.93522 0.98395 1.21451 0.98521 0.97160 0.97996 1.19062 0.95372 0.97111 0.96145 1.21301 0.99240 0.98076 0.92013 1.21173 0.97752 0.96169 0.99372 1.21060 0.94761 0.98926 0.96771 1.21086 1.02115 1.00050 0.93963 1.17770 0.91798 0.98305 0.83905 1.91487 1.75335 1.95579 1.49111 1.22942 1.02305 0.78610 0.99981 0.95154 0.93596 0.97955 0.93588 0.90348 0.90385 0.91506 0.91311 0.87659 0.88382 0.85988 0.85923 0.84556 0.85170 0.85078 0.84738 0.90946 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.82 59.84 0.47 4.33 16 2 N -0.59 -14.15 2.93 -171.39 -0.50 -14.66 16 3 C -0.26 -6.97 9.63 -15.06 -0.14 -7.12 16 4 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 5 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 6 N -0.90 -26.15 10.67 55.49 0.59 -25.56 16 7 Si 0.91 21.52 29.58 -169.99 -5.03 16.49 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 C 0.17 3.33 3.43 -66.09 -0.23 3.11 16 12 H 0.08 1.48 7.92 -51.93 -0.41 1.07 16 13 C -0.15 -2.32 6.61 -24.46 -0.16 -2.49 16 14 C 0.10 1.23 6.70 -2.42 -0.02 1.21 16 15 N -0.61 -9.69 3.32 -170.39 -0.57 -10.26 16 16 C 0.52 8.24 7.84 -10.99 -0.09 8.16 16 17 O -0.54 -10.81 16.36 5.56 0.09 -10.72 16 18 C -0.11 -1.18 5.15 -29.03 -0.15 -1.33 16 19 C -0.10 -1.09 8.18 -36.21 -0.30 -1.39 16 20 C -0.13 -1.46 9.31 -37.58 -0.35 -1.81 16 21 C -0.08 -0.82 5.87 -104.95 -0.62 -1.44 16 22 C -0.09 -0.84 9.40 -39.20 -0.37 -1.20 16 23 C -0.13 -0.98 10.03 -39.63 -0.40 -1.38 16 24 C -0.10 -0.71 10.04 -39.51 -0.40 -1.10 16 25 C -0.15 -1.30 10.01 -39.57 -0.40 -1.70 16 26 C 0.10 1.08 7.28 -39.03 -0.28 0.79 16 27 F -0.14 -1.56 16.62 2.25 0.04 -1.52 16 28 C 0.09 1.67 6.51 -3.07 -0.02 1.65 16 29 H 0.03 0.81 7.33 -51.93 -0.38 0.43 16 30 H 0.05 1.19 7.23 -51.93 -0.38 0.82 16 31 H 0.00 0.04 6.04 -51.93 -0.31 -0.27 16 32 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.08 1.28 6.07 -51.93 -0.32 0.96 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 37 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.90 7.53 -51.93 -0.39 0.51 16 39 H 0.12 1.34 6.04 -52.49 -0.32 1.02 16 40 H 0.12 1.26 7.55 -52.49 -0.40 0.86 16 41 H 0.14 1.16 6.17 -52.49 -0.32 0.84 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.07 1.63 7.11 -51.93 -0.37 1.26 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -32.52 379.03 -9.68 -42.20 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.49 Total: 0.00 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.53 Total: -1.69 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.48 Total: -50.47 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.52 -9.68 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190890392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.499 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds