Wall clock time and date at job start Tue Mar 31 2020 16:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36943 * 120.00263 * 2 1 4 4 H 1.07993 * 120.00215 * 201.72676 * 3 2 1 5 5 C 1.38810 * 119.99361 * 21.72247 * 3 2 1 6 6 N 1.31615 * 120.00281 * 13.65335 * 5 3 2 7 7 Si 1.86804 * 119.99810 * 193.65221 * 5 3 2 8 8 H 1.48498 * 109.47008 * 90.00088 * 7 5 3 9 9 H 1.48495 * 109.47236 * 210.00422 * 7 5 3 10 10 H 1.48504 * 109.46836 * 330.00048 * 7 5 3 11 11 C 1.46504 * 120.00217 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64173 * 176.85560 * 11 2 1 13 13 C 1.55157 * 110.87060 * 53.60445 * 11 2 1 14 14 C 1.55127 * 101.48401 * 205.90152 * 13 11 2 15 15 N 1.47417 * 104.72432 * 37.29980 * 14 13 11 16 16 C 1.34777 * 125.65047 * 155.81586 * 15 14 13 17 17 O 1.21278 * 120.00006 * 179.68665 * 16 15 14 18 18 C 1.50696 * 119.99716 * 359.69308 * 16 15 14 19 19 C 1.50707 * 109.46905 * 179.97438 * 18 16 15 20 20 C 1.32588 * 119.99736 * 125.00001 * 19 18 16 21 21 C 1.47788 * 119.99508 * 179.97438 * 20 19 18 22 22 C 1.39535 * 120.15335 * 359.95495 * 21 20 19 23 23 C 1.37952 * 119.87719 * 180.02562 * 22 21 20 24 24 C 1.38387 * 120.19680 * 359.97438 * 23 22 21 25 25 C 1.38276 * 120.31037 * 0.02562 * 24 23 22 26 26 C 1.38240 * 120.11746 * 359.97438 * 25 24 23 27 27 F 1.35100 * 120.09676 * 179.97438 * 26 25 24 28 28 C 1.47019 * 108.70233 * 335.55135 * 15 14 13 29 29 H 1.09000 * 109.47408 * 274.45987 * 1 2 3 30 30 H 1.08996 * 109.47184 * 34.45550 * 1 2 3 31 31 H 1.08997 * 109.47111 * 154.45856 * 1 2 3 32 32 H 0.97007 * 119.99887 * 179.97438 * 6 5 3 33 33 H 1.08992 * 111.00860 * 324.14423 * 13 11 2 34 34 H 1.08997 * 111.00135 * 87.95562 * 13 11 2 35 35 H 1.09003 * 110.49792 * 278.45499 * 14 13 11 36 36 H 1.09000 * 110.34438 * 156.06667 * 14 13 11 37 37 H 1.09002 * 109.47311 * 60.00329 * 18 16 15 38 38 H 1.08999 * 109.47457 * 299.99524 * 18 16 15 39 39 H 1.08001 * 119.99765 * 304.99234 * 19 18 16 40 40 H 1.07994 * 120.00066 * 359.97438 * 20 19 18 41 41 H 1.07999 * 120.06166 * 0.04173 * 22 21 20 42 42 H 1.07997 * 119.90409 * 180.25287 * 23 22 21 43 43 H 1.07996 * 119.84735 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.93536 * 179.97438 * 25 24 23 45 45 H 1.08995 * 109.88521 * 120.70475 * 28 15 14 46 46 H 1.09003 * 109.88608 * 241.87029 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1721 1.2191 -0.3462 5 6 1.5295 2.3453 0.4449 6 7 0.3966 2.2717 1.1108 7 14 2.3029 4.0101 0.0987 8 1 1.7957 4.5319 -1.1958 9 1 1.9487 4.9564 1.1869 10 1 3.7793 3.8653 0.0299 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0922 -0.0564 13 6 1.7289 -2.1771 -1.1680 14 6 2.0620 -3.5875 -0.6147 15 7 1.7543 -3.5076 0.8248 16 6 1.4460 -4.5503 1.6212 17 8 1.2154 -4.3673 2.7977 18 6 1.3882 -5.9436 1.0498 19 6 1.0259 -6.9190 2.1400 20 6 -0.0164 -7.7245 1.9892 21 6 -0.3714 -8.6814 3.0581 22 6 0.3887 -8.7404 4.2268 23 6 0.0525 -9.6361 5.2206 24 6 -1.0362 -10.4755 5.0620 25 6 -1.7949 -10.4238 3.9071 26 6 -1.4697 -9.5311 2.9029 27 9 -2.2109 -9.4812 1.7746 28 6 1.8454 -2.1030 1.2491 29 1 -0.3634 0.0799 1.0245 30 1 -0.3633 0.8473 -0.5814 31 1 -0.3633 -0.9272 -0.4431 32 1 -0.0366 3.0820 1.4220 33 1 0.6592 -2.0656 -1.3446 34 1 2.2962 -1.9706 -2.0755 35 1 3.1169 -3.8171 -0.7649 36 1 1.4370 -4.3403 -1.0951 37 1 2.3615 -6.2072 0.6357 38 1 0.6357 -5.9824 0.2622 39 1 1.6153 -6.9618 3.0440 40 1 -0.6059 -7.6814 1.0854 41 1 1.2384 -8.0859 4.3531 42 1 0.6381 -9.6794 6.1270 43 1 -1.2945 -11.1743 5.8438 44 1 -2.6431 -11.0819 3.7895 45 1 0.8886 -1.7757 1.6558 46 1 2.6272 -1.9927 2.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190890392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:00 Heat of formation + Delta-G solvation = -27.587700 kcal Electronic energy + Delta-G solvation = -27174.592033 eV Core-core repulsion = 23172.052185 eV Total energy + Delta-G solvation = -4002.539848 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.91730 -41.10757 -39.96325 -38.96623 -36.55462 -36.01519 -33.54346 -32.31250 -31.49721 -31.16474 -29.67335 -28.15532 -27.92694 -25.24422 -24.29236 -23.81275 -23.07593 -20.98975 -20.62030 -20.01165 -18.96062 -18.71800 -18.06478 -17.48102 -17.38043 -17.05233 -16.64218 -16.62375 -16.21592 -15.74863 -15.19861 -15.10966 -15.02782 -14.89238 -14.52324 -14.29090 -14.04642 -13.94688 -13.63426 -13.51188 -13.32625 -13.16841 -13.11615 -12.80534 -12.75335 -12.52500 -12.39647 -12.21615 -12.12911 -12.08130 -11.94700 -11.79905 -11.40681 -11.34465 -10.89396 -10.64791 -9.84230 -9.64131 -9.11051 -8.84700 -7.84901 -5.34119 -0.21147 0.22454 1.38636 1.47410 1.48277 1.57313 1.62837 2.07576 2.50774 2.75531 3.23946 3.27518 3.52773 3.55240 3.62364 3.74525 3.85532 3.99461 4.07439 4.18047 4.23424 4.28659 4.34808 4.36740 4.43778 4.47954 4.54961 4.61359 4.72586 4.79841 4.91162 4.93061 5.05341 5.06300 5.11206 5.19388 5.24975 5.25989 5.32150 5.44451 5.45169 5.55086 5.63068 5.68276 5.68826 5.93364 6.29370 6.60063 7.10574 7.16034 7.82589 8.26917 9.18459 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024571 B = 0.001932 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.270332 B =14486.165899 C =14675.137894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.264 4.264 4 H 0.081 0.919 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.973 3.027 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.264 1.264 11 C 0.164 3.836 12 H 0.084 0.916 13 C -0.142 4.142 14 C 0.104 3.896 15 N -0.615 5.615 16 C 0.518 3.482 17 O -0.596 6.596 18 C -0.096 4.096 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.101 4.101 22 C -0.102 4.102 23 C -0.127 4.127 24 C -0.091 4.091 25 C -0.157 4.157 26 C 0.077 3.923 27 F -0.147 7.147 28 C 0.097 3.903 29 H -0.008 1.008 30 H 0.020 0.980 31 H 0.033 0.967 32 H 0.247 0.753 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.030 0.970 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 -28.400 -0.338 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.323 5.323 3 C -0.394 4.394 4 H 0.099 0.901 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.801 3.199 8 H -0.211 1.211 9 H -0.227 1.227 10 H -0.189 1.189 11 C 0.056 3.944 12 H 0.102 0.898 13 C -0.181 4.181 14 C -0.017 4.017 15 N -0.348 5.348 16 C 0.309 3.691 17 O -0.477 6.477 18 C -0.134 4.134 19 C -0.130 4.130 20 C -0.151 4.151 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.145 4.145 24 C -0.109 4.109 25 C -0.175 4.175 26 C 0.058 3.942 27 F -0.126 7.126 28 C -0.029 4.029 29 H 0.011 0.989 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.173 0.827 43 H 0.182 0.818 44 H 0.171 0.829 45 H 0.048 0.952 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.356 -28.211 0.316 28.245 hybrid contribution -0.303 1.661 0.184 1.698 sum 1.053 -26.550 0.500 26.575 Atomic orbital electron populations 1.20451 0.83028 0.96040 0.96988 1.44136 1.01912 1.01209 1.85087 1.19656 0.98214 0.86018 1.35519 0.90136 1.25878 0.98619 1.02209 0.98544 1.70279 1.20533 1.27446 1.40538 0.85170 0.78553 0.79412 0.76717 1.21115 1.22726 1.18878 1.21592 0.96313 0.84694 0.91838 0.89818 1.23263 1.02245 0.93729 0.98905 1.22655 1.02855 0.98162 0.78025 1.48681 1.68008 1.06242 1.11889 1.21087 0.75507 0.87131 0.85418 1.90685 1.51900 1.86370 1.18738 1.20778 1.07106 0.87332 0.98231 1.22975 0.97220 0.94075 0.98705 1.21574 0.98138 0.97145 0.98267 1.19248 0.96233 0.97827 0.96883 1.21488 0.99430 0.98808 0.92239 1.21538 0.97974 0.95299 0.99658 1.21478 0.93793 0.98736 0.96891 1.21408 1.02754 0.99625 0.93721 1.18074 0.92250 0.99469 0.84383 1.91450 1.75610 1.95762 1.49774 1.22473 0.99322 0.81526 0.99563 0.98938 0.96131 0.94911 0.94360 0.91580 0.88028 0.88317 0.87421 0.84153 0.86047 0.86547 0.85516 0.84361 0.82721 0.81850 0.82886 0.95189 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.03 7.82 127.77 1.00 10.03 16 2 N -0.60 -29.53 2.93 -696.17 -2.04 -31.57 16 3 C -0.26 -14.18 9.63 84.03 0.81 -13.37 16 4 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 5 C -0.06 -3.23 5.08 84.86 0.43 -2.80 16 6 N -0.94 -56.81 10.67 21.65 0.23 -56.58 16 7 Si 0.97 44.92 29.58 68.60 2.03 46.95 16 8 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 9 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 C 0.16 6.23 3.43 46.18 0.16 6.39 16 12 H 0.08 3.06 7.92 -2.39 -0.02 3.05 16 13 C -0.14 -3.87 6.61 32.06 0.21 -3.66 16 14 C 0.10 2.11 6.70 86.93 0.58 2.69 16 15 N -0.61 -18.46 3.32 -811.39 -2.70 -21.15 16 16 C 0.52 15.73 7.84 87.66 0.69 16.41 16 17 O -0.60 -24.30 16.36 -3.02 -0.05 -24.35 16 18 C -0.10 -1.77 5.15 29.10 0.15 -1.62 16 19 C -0.11 -2.35 8.18 24.53 0.20 -2.15 16 20 C -0.13 -2.83 9.31 23.64 0.22 -2.61 16 21 C -0.10 -2.16 5.87 -20.08 -0.12 -2.28 16 22 C -0.10 -1.86 9.40 22.51 0.21 -1.65 16 23 C -0.13 -1.73 10.03 22.24 0.22 -1.50 16 24 C -0.09 -1.10 10.04 22.31 0.22 -0.87 16 25 C -0.16 -2.40 10.01 22.28 0.22 -2.18 16 26 C 0.08 1.61 7.28 22.63 0.16 1.77 16 27 F -0.15 -3.35 16.62 44.97 0.75 -2.60 16 28 C 0.10 3.84 6.51 86.73 0.56 4.41 16 29 H -0.01 -0.44 7.33 -2.39 -0.02 -0.46 16 30 H 0.02 1.09 7.23 -2.39 -0.02 1.08 16 31 H 0.03 1.40 6.04 -2.39 -0.01 1.39 16 32 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 33 H 0.07 1.99 6.07 -2.39 -0.01 1.97 16 34 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 1.46 7.48 -2.39 -0.02 1.44 16 37 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.12 1.73 7.53 -2.39 -0.02 1.71 16 39 H 0.12 2.54 6.04 -2.91 -0.02 2.52 16 40 H 0.13 2.48 7.55 -2.91 -0.02 2.46 16 41 H 0.14 2.35 6.17 -2.91 -0.02 2.34 16 42 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 43 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 44 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.03 1.43 7.11 -2.39 -0.02 1.41 16 46 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -76.18 379.03 5.15 -71.03 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.99 Total: 11.25 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.94 Total: 7.01 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.51 Total: -109.30 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.75 Total: -2.60 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.18 5.15 -71.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190890392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.446 kcal (2) G-P(sol) polarization free energy of solvation -76.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds