Wall clock time and date at job start Tue Mar 31 2020 16:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00505 * 2 1 4 4 H 1.07993 * 120.00392 * 160.70849 * 3 2 1 5 5 C 1.38811 * 119.99616 * 340.42500 * 3 2 1 6 6 N 1.31622 * 120.00228 * 347.09957 * 5 3 2 7 7 Si 1.86798 * 119.99953 * 167.10240 * 5 3 2 8 8 H 1.48505 * 109.47387 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47182 * 120.00080 * 7 5 3 10 10 H 1.48504 * 109.47333 * 240.00011 * 7 5 3 11 11 C 1.46499 * 119.99607 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88919 * 180.70058 * 11 2 1 13 13 C 1.55156 * 111.01006 * 304.58587 * 11 2 1 14 14 C 1.54319 * 102.94346 * 153.57303 * 13 11 2 15 15 N 1.47023 * 107.27195 * 337.80970 * 14 13 11 16 16 C 1.34784 * 125.64395 * 178.99319 * 15 14 13 17 17 O 1.21285 * 119.99231 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00222 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.46991 * 179.97438 * 18 16 15 20 20 C 1.32579 * 120.00057 * 124.99618 * 19 18 16 21 21 C 1.47781 * 120.00205 * 180.02562 * 20 19 18 22 22 C 1.39532 * 120.15594 * 359.72345 * 21 20 19 23 23 C 1.37952 * 119.88204 * 179.72175 * 22 21 20 24 24 C 1.38374 * 120.19616 * 0.55799 * 23 22 21 25 25 C 1.38280 * 120.31506 * 359.72185 * 24 23 22 26 26 C 1.38241 * 120.11017 * 0.02562 * 25 24 23 27 27 F 1.35102 * 120.09787 * 180.02562 * 26 25 24 28 28 C 1.47458 * 108.72341 * 358.97222 * 15 14 13 29 29 H 1.09004 * 109.46255 * 84.82571 * 1 2 3 30 30 H 1.08993 * 109.47283 * 204.83314 * 1 2 3 31 31 H 1.09004 * 109.47024 * 324.83277 * 1 2 3 32 32 H 0.96997 * 120.00228 * 179.97438 * 6 5 3 33 33 H 1.08999 * 110.72213 * 271.94004 * 13 11 2 34 34 H 1.09004 * 110.71725 * 35.21338 * 13 11 2 35 35 H 1.08999 * 109.88032 * 97.22683 * 14 13 11 36 36 H 1.09008 * 109.88261 * 218.23640 * 14 13 11 37 37 H 1.08998 * 109.46743 * 299.99741 * 18 16 15 38 38 H 1.08998 * 109.47362 * 60.00085 * 18 16 15 39 39 H 1.07995 * 120.00133 * 305.00194 * 19 18 16 40 40 H 1.08002 * 120.00096 * 0.02562 * 20 19 18 41 41 H 1.08007 * 120.05409 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.89868 * 180.27633 * 23 22 21 43 43 H 1.07998 * 119.84684 * 179.73697 * 24 23 22 44 44 H 1.08001 * 119.94177 * 180.02562 * 25 24 23 45 45 H 1.09004 * 110.35640 * 265.25195 * 28 15 14 46 46 H 1.09002 * 110.40635 * 142.91617 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1842 1.2120 0.3090 5 6 1.5159 2.3532 -0.4028 6 7 0.3548 2.2925 -1.0196 7 14 2.3109 4.0104 -0.0694 8 1 3.6041 3.8071 0.6317 9 1 2.5509 4.7120 -1.3560 10 1 1.4099 4.8297 0.7805 11 6 2.1974 -1.2688 0.0006 12 1 3.2737 -1.0963 0.0129 13 6 1.7635 -2.1611 1.1934 14 6 2.0555 -3.5875 0.6822 15 7 2.0774 -3.5289 -0.7867 16 6 2.3199 -4.5675 -1.6107 17 8 2.3123 -4.4028 -2.8123 18 6 2.6006 -5.9334 -1.0391 19 6 2.8360 -6.9095 -2.1628 20 6 3.9525 -7.6235 -2.1977 21 6 4.1836 -8.5804 -3.2999 22 6 3.2263 -8.7392 -4.3025 23 6 3.4504 -9.6298 -5.3319 24 6 4.6163 -10.3742 -5.3667 25 6 5.5680 -10.2276 -4.3743 26 6 5.3590 -9.3350 -3.3395 27 9 6.2891 -9.1915 -2.3703 28 6 1.7897 -2.1458 -1.2095 29 1 -0.3632 0.0927 -1.0236 30 1 -0.3633 -0.9326 0.4316 31 1 -0.3633 0.8401 0.5919 32 1 -0.0883 3.1083 -1.3008 33 1 2.3599 -1.9388 2.0783 34 1 0.7009 -2.0361 1.4019 35 1 3.0233 -3.9237 1.0543 36 1 1.2729 -4.2687 1.0167 37 1 3.4866 -5.8871 -0.4059 38 1 1.7469 -6.2615 -0.4461 39 1 2.0952 -7.0274 -2.9397 40 1 4.6933 -7.5059 -1.4206 41 1 2.3133 -8.1629 -4.2748 42 1 2.7116 -9.7497 -6.1105 43 1 4.7841 -11.0729 -6.1730 44 1 6.4760 -10.8113 -4.4076 45 1 0.7272 -2.0278 -1.4227 46 1 2.3843 -1.8845 -2.0849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190890393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:05 Heat of formation + Delta-G solvation = -9.888630 kcal Electronic energy + Delta-G solvation = -27081.761521 eV Core-core repulsion = 23079.989162 eV Total energy + Delta-G solvation = -4001.772358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.13949 -39.86157 -39.27811 -37.54799 -35.21127 -34.82917 -31.94488 -31.27843 -30.84487 -29.75897 -28.38428 -26.95511 -26.08294 -23.97571 -23.28515 -22.44661 -22.25176 -19.85227 -19.31834 -18.93328 -17.99319 -17.10114 -16.92340 -16.64695 -16.29786 -15.86999 -15.85515 -15.13318 -15.01079 -14.54828 -14.40046 -13.94963 -13.58846 -13.45425 -13.36046 -13.16733 -12.85449 -12.68741 -12.60133 -12.43250 -12.36988 -12.02815 -11.89628 -11.51977 -11.37269 -11.28776 -10.93224 -10.83460 -10.59577 -10.52271 -10.45674 -10.26932 -9.91831 -9.83941 -9.64737 -9.17915 -8.62524 -8.38277 -8.32859 -6.87705 -5.78360 -3.23312 0.48973 0.87891 2.15528 2.80466 3.22666 3.35446 3.42471 3.44177 3.45091 3.91761 4.28631 4.37593 4.44151 4.57445 4.65894 4.81659 4.90183 4.95678 4.97137 5.08524 5.21739 5.28835 5.33635 5.37575 5.48166 5.54583 5.60397 5.69584 5.75779 5.80926 5.86757 5.88289 5.98332 6.07466 6.27397 6.34322 6.36023 6.43755 6.50898 6.57214 6.61064 6.76144 6.84352 7.34996 7.67305 7.77077 7.78994 8.30269 8.36367 9.16451 9.78885 10.25837 11.26380 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.001892 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.169108 B =14799.401982 C =14885.277685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.258 4.258 4 H 0.072 0.928 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.077 0.923 13 C -0.154 4.154 14 C 0.103 3.897 15 N -0.615 5.615 16 C 0.526 3.474 17 O -0.544 6.544 18 C -0.110 4.110 19 C -0.099 4.099 20 C -0.133 4.133 21 C -0.076 4.076 22 C -0.089 4.089 23 C -0.126 4.126 24 C -0.097 4.097 25 C -0.153 4.153 26 C 0.101 3.899 27 F -0.137 7.137 28 C 0.086 3.914 29 H 0.030 0.970 30 H 0.001 0.999 31 H 0.048 0.952 32 H 0.253 0.747 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.067 0.933 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.220 -25.684 -1.300 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.307 5.307 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.020 4.020 15 N -0.349 5.349 16 C 0.314 3.686 17 O -0.421 6.421 18 C -0.150 4.150 19 C -0.117 4.117 20 C -0.151 4.151 21 C -0.077 4.077 22 C -0.106 4.106 23 C -0.144 4.144 24 C -0.115 4.115 25 C -0.172 4.172 26 C 0.082 3.918 27 F -0.115 7.115 28 C -0.038 4.038 29 H 0.048 0.952 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.086 0.914 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.145 -25.453 -2.002 26.045 hybrid contribution 0.505 0.956 0.294 1.120 sum 5.650 -24.497 -1.708 25.198 Atomic orbital electron populations 1.20842 0.82225 0.95663 0.99635 1.43906 1.02029 0.99870 1.84846 1.19298 0.96549 0.84597 1.38329 0.90981 1.25008 0.97586 0.98541 0.98549 1.70103 1.16916 1.26729 1.41366 0.86134 0.78573 0.83982 0.77530 1.20286 1.21700 1.21573 1.21443 0.96363 0.85777 0.90223 0.90441 1.23207 1.02929 0.92890 1.00393 1.22037 1.00693 0.99221 0.80081 1.48582 1.69270 1.09917 1.07122 1.20083 0.77047 0.85155 0.86332 1.90709 1.52145 1.84601 1.14686 1.20755 1.04442 0.91840 0.97966 1.22959 0.97479 0.93836 0.97442 1.21445 0.98374 0.97675 0.97651 1.19061 0.93764 0.97733 0.97135 1.21306 0.98738 0.97667 0.92928 1.21173 0.97887 0.96668 0.98716 1.21059 0.93350 0.99144 0.97965 1.21087 1.01445 0.99920 0.94760 1.17772 0.87381 0.98589 0.88061 1.91486 1.64009 1.94768 1.61264 1.23134 1.01204 0.78957 1.00541 0.95174 0.98068 0.93326 0.93670 0.90521 0.90352 0.91841 0.91998 0.88354 0.87645 0.85981 0.85923 0.84547 0.85159 0.85074 0.84738 0.91435 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.81 7.71 59.85 0.46 4.27 16 2 N -0.59 -14.09 2.97 -171.03 -0.51 -14.59 16 3 C -0.26 -6.89 9.66 -15.06 -0.15 -7.04 16 4 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 5 C 0.00 0.04 5.11 -17.43 -0.09 -0.05 16 6 N -0.91 -26.00 10.50 55.49 0.58 -25.42 16 7 Si 0.91 21.54 29.57 -169.99 -5.03 16.52 16 8 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.17 3.36 3.54 -65.78 -0.23 3.13 16 12 H 0.08 1.53 7.92 -51.93 -0.41 1.12 16 13 C -0.15 -2.33 6.48 -24.90 -0.16 -2.49 16 14 C 0.10 1.28 6.49 -3.07 -0.02 1.26 16 15 N -0.61 -9.60 3.33 -170.48 -0.57 -10.17 16 16 C 0.53 8.13 7.84 -10.98 -0.09 8.04 16 17 O -0.54 -10.61 16.29 5.55 0.09 -10.52 16 18 C -0.11 -1.16 5.34 -29.04 -0.16 -1.32 16 19 C -0.10 -1.07 8.18 -36.21 -0.30 -1.37 16 20 C -0.13 -1.43 9.31 -37.59 -0.35 -1.78 16 21 C -0.08 -0.81 5.87 -104.96 -0.62 -1.43 16 22 C -0.09 -0.82 9.40 -39.20 -0.37 -1.19 16 23 C -0.13 -0.96 10.03 -39.64 -0.40 -1.36 16 24 C -0.10 -0.69 10.04 -39.52 -0.40 -1.09 16 25 C -0.15 -1.27 10.01 -39.56 -0.40 -1.67 16 26 C 0.10 1.05 7.28 -39.02 -0.28 0.77 16 27 F -0.14 -1.53 16.62 2.25 0.04 -1.49 16 28 C 0.09 1.65 6.49 -2.51 -0.02 1.63 16 29 H 0.03 0.78 7.43 -51.93 -0.39 0.40 16 30 H 0.00 0.02 6.17 -51.93 -0.32 -0.30 16 31 H 0.05 1.25 7.10 -51.93 -0.37 0.88 16 32 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 37 H 0.10 0.87 7.81 -51.93 -0.41 0.46 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.12 1.32 6.04 -52.49 -0.32 1.01 16 40 H 0.12 1.22 7.55 -52.49 -0.40 0.83 16 41 H 0.14 1.15 6.17 -52.48 -0.32 0.82 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.07 1.39 7.20 -51.93 -0.37 1.02 16 46 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 LS Contribution 379.85 15.07 5.72 5.72 Total: -1.00 -32.14 379.85 -9.76 -41.90 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.55 Total: -0.25 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -3.55 Total: -1.68 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.49 Total: -50.19 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.14 -9.76 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190890393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.010 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds