Wall clock time and date at job start Tue Mar 31 2020 16:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00505 * 2 1 4 4 H 1.07993 * 120.00392 * 160.70849 * 3 2 1 5 5 C 1.38811 * 119.99616 * 340.42500 * 3 2 1 6 6 N 1.31622 * 120.00228 * 347.09957 * 5 3 2 7 7 Si 1.86798 * 119.99953 * 167.10240 * 5 3 2 8 8 H 1.48505 * 109.47387 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47182 * 120.00080 * 7 5 3 10 10 H 1.48504 * 109.47333 * 240.00011 * 7 5 3 11 11 C 1.46499 * 119.99607 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88919 * 180.70058 * 11 2 1 13 13 C 1.55156 * 111.01006 * 304.58587 * 11 2 1 14 14 C 1.54319 * 102.94346 * 153.57303 * 13 11 2 15 15 N 1.47023 * 107.27195 * 337.80970 * 14 13 11 16 16 C 1.34784 * 125.64395 * 178.99319 * 15 14 13 17 17 O 1.21285 * 119.99231 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00222 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.46991 * 179.97438 * 18 16 15 20 20 C 1.32579 * 120.00057 * 124.99618 * 19 18 16 21 21 C 1.47781 * 120.00205 * 180.02562 * 20 19 18 22 22 C 1.39532 * 120.15594 * 359.72345 * 21 20 19 23 23 C 1.37952 * 119.88204 * 179.72175 * 22 21 20 24 24 C 1.38374 * 120.19616 * 0.55799 * 23 22 21 25 25 C 1.38280 * 120.31506 * 359.72185 * 24 23 22 26 26 C 1.38241 * 120.11017 * 0.02562 * 25 24 23 27 27 F 1.35102 * 120.09787 * 180.02562 * 26 25 24 28 28 C 1.47458 * 108.72341 * 358.97222 * 15 14 13 29 29 H 1.09004 * 109.46255 * 84.82571 * 1 2 3 30 30 H 1.08993 * 109.47283 * 204.83314 * 1 2 3 31 31 H 1.09004 * 109.47024 * 324.83277 * 1 2 3 32 32 H 0.96997 * 120.00228 * 179.97438 * 6 5 3 33 33 H 1.08999 * 110.72213 * 271.94004 * 13 11 2 34 34 H 1.09004 * 110.71725 * 35.21338 * 13 11 2 35 35 H 1.08999 * 109.88032 * 97.22683 * 14 13 11 36 36 H 1.09008 * 109.88261 * 218.23640 * 14 13 11 37 37 H 1.08998 * 109.46743 * 299.99741 * 18 16 15 38 38 H 1.08998 * 109.47362 * 60.00085 * 18 16 15 39 39 H 1.07995 * 120.00133 * 305.00194 * 19 18 16 40 40 H 1.08002 * 120.00096 * 0.02562 * 20 19 18 41 41 H 1.08007 * 120.05409 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.89868 * 180.27633 * 23 22 21 43 43 H 1.07998 * 119.84684 * 179.73697 * 24 23 22 44 44 H 1.08001 * 119.94177 * 180.02562 * 25 24 23 45 45 H 1.09004 * 110.35640 * 265.25195 * 28 15 14 46 46 H 1.09002 * 110.40635 * 142.91617 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1842 1.2120 0.3090 5 6 1.5159 2.3532 -0.4028 6 7 0.3548 2.2925 -1.0196 7 14 2.3109 4.0104 -0.0694 8 1 3.6041 3.8071 0.6317 9 1 2.5509 4.7120 -1.3560 10 1 1.4099 4.8297 0.7805 11 6 2.1974 -1.2688 0.0006 12 1 3.2737 -1.0963 0.0129 13 6 1.7635 -2.1611 1.1934 14 6 2.0555 -3.5875 0.6822 15 7 2.0774 -3.5289 -0.7867 16 6 2.3199 -4.5675 -1.6107 17 8 2.3123 -4.4028 -2.8123 18 6 2.6006 -5.9334 -1.0391 19 6 2.8360 -6.9095 -2.1628 20 6 3.9525 -7.6235 -2.1977 21 6 4.1836 -8.5804 -3.2999 22 6 3.2263 -8.7392 -4.3025 23 6 3.4504 -9.6298 -5.3319 24 6 4.6163 -10.3742 -5.3667 25 6 5.5680 -10.2276 -4.3743 26 6 5.3590 -9.3350 -3.3395 27 9 6.2891 -9.1915 -2.3703 28 6 1.7897 -2.1458 -1.2095 29 1 -0.3632 0.0927 -1.0236 30 1 -0.3633 -0.9326 0.4316 31 1 -0.3633 0.8401 0.5919 32 1 -0.0883 3.1083 -1.3008 33 1 2.3599 -1.9388 2.0783 34 1 0.7009 -2.0361 1.4019 35 1 3.0233 -3.9237 1.0543 36 1 1.2729 -4.2687 1.0167 37 1 3.4866 -5.8871 -0.4059 38 1 1.7469 -6.2615 -0.4461 39 1 2.0952 -7.0274 -2.9397 40 1 4.6933 -7.5059 -1.4206 41 1 2.3133 -8.1629 -4.2748 42 1 2.7116 -9.7497 -6.1105 43 1 4.7841 -11.0729 -6.1730 44 1 6.4760 -10.8113 -4.4076 45 1 0.7272 -2.0278 -1.4227 46 1 2.3843 -1.8845 -2.0849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190890393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:04 Heat of formation + Delta-G solvation = -27.205031 kcal Electronic energy + Delta-G solvation = -27082.512416 eV Core-core repulsion = 23079.989162 eV Total energy + Delta-G solvation = -4002.523254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.91305 -41.10898 -39.96179 -38.96513 -36.57778 -36.01305 -33.54950 -32.30825 -31.49496 -31.17787 -29.66235 -28.13433 -27.94373 -25.26415 -24.29650 -23.76911 -23.05713 -21.00805 -20.65060 -19.97531 -18.97626 -18.72218 -18.07987 -17.59684 -17.35288 -16.95774 -16.63087 -16.50188 -16.32655 -15.75070 -15.18663 -15.11820 -14.97057 -14.77064 -14.42980 -14.36921 -14.12300 -13.92534 -13.79313 -13.49165 -13.44954 -13.15150 -13.10747 -12.81311 -12.79412 -12.49303 -12.39738 -12.14932 -12.11718 -12.04287 -11.94451 -11.79734 -11.41856 -11.31962 -10.89533 -10.66082 -9.84016 -9.65639 -9.10857 -8.84622 -7.84957 -5.31816 -0.20948 0.22625 1.38843 1.46295 1.47468 1.57841 1.62220 2.05556 2.50770 2.75753 3.24000 3.27145 3.52940 3.54355 3.61499 3.74840 3.92961 3.99540 4.06721 4.16299 4.21787 4.24627 4.34860 4.36725 4.43528 4.46921 4.54977 4.62586 4.74877 4.79661 4.89033 4.93269 5.03472 5.06687 5.11450 5.22046 5.24351 5.26213 5.33298 5.44644 5.45434 5.55351 5.62419 5.69246 5.72952 5.93542 6.28880 6.59224 7.11538 7.15133 7.83444 8.25605 9.18345 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023540 B = 0.001892 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.169108 B =14799.401982 C =14885.277685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.603 5.603 3 C -0.263 4.263 4 H 0.077 0.923 5 C -0.057 4.057 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.264 1.264 9 H -0.297 1.297 10 H -0.290 1.290 11 C 0.164 3.836 12 H 0.073 0.927 13 C -0.141 4.141 14 C 0.105 3.895 15 N -0.615 5.615 16 C 0.520 3.480 17 O -0.595 6.595 18 C -0.096 4.096 19 C -0.112 4.112 20 C -0.132 4.132 21 C -0.101 4.101 22 C -0.102 4.102 23 C -0.127 4.127 24 C -0.091 4.091 25 C -0.156 4.156 26 C 0.078 3.922 27 F -0.147 7.147 28 C 0.096 3.904 29 H -0.004 1.004 30 H 0.036 0.964 31 H 0.022 0.978 32 H 0.248 0.752 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.138 0.862 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.154 0.846 45 H 0.047 0.953 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.277 -28.320 -0.015 29.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.324 5.324 3 C -0.393 4.393 4 H 0.095 0.905 5 C -0.252 4.252 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.188 1.188 9 H -0.224 1.224 10 H -0.216 1.216 11 C 0.055 3.945 12 H 0.091 0.909 13 C -0.180 4.180 14 C -0.016 4.016 15 N -0.349 5.349 16 C 0.310 3.690 17 O -0.476 6.476 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.150 4.150 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.145 4.145 24 C -0.109 4.109 25 C -0.175 4.175 26 C 0.059 3.941 27 F -0.126 7.126 28 C -0.029 4.029 29 H 0.014 0.986 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.172 0.828 43 H 0.181 0.819 44 H 0.171 0.829 45 H 0.065 0.935 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.231 -28.143 -0.668 28.832 hybrid contribution 0.221 1.651 -0.193 1.677 sum 6.452 -26.491 -0.861 27.279 Atomic orbital electron populations 1.20515 0.82457 0.96237 0.97325 1.44095 1.02208 1.00932 1.85171 1.19663 0.96810 0.85814 1.36985 0.90527 1.25796 0.98387 1.01884 0.99104 1.70278 1.18409 1.27014 1.43028 0.85132 0.78167 0.79813 0.76890 1.18787 1.22407 1.21646 1.21625 0.95738 0.84718 0.92412 0.90929 1.23072 1.02798 0.93302 0.98854 1.22279 1.03902 0.97977 0.77465 1.48647 1.69115 1.08260 1.08846 1.21050 0.75610 0.86581 0.85716 1.90687 1.54229 1.85515 1.17136 1.20770 1.06772 0.87917 0.97993 1.22964 0.97656 0.94503 0.97906 1.21570 0.98130 0.97531 0.97771 1.19246 0.94539 0.98512 0.97884 1.21489 0.98736 0.98386 0.93377 1.21533 0.98649 0.95763 0.98555 1.21473 0.92443 0.98881 0.98108 1.21409 1.02480 0.99374 0.94235 1.18067 0.87477 0.99759 0.88810 1.91451 1.64335 1.94969 1.61804 1.22667 0.99204 0.81794 0.99276 0.98590 0.94546 0.95946 0.94298 0.88610 0.90852 0.88491 0.88459 0.85843 0.84446 0.86653 0.85394 0.84407 0.82779 0.81880 0.82872 0.93456 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 7.71 127.77 0.98 9.70 16 2 N -0.60 -29.37 2.97 -695.01 -2.06 -31.43 16 3 C -0.26 -14.19 9.66 84.03 0.81 -13.38 16 4 H 0.08 3.98 7.82 -2.91 -0.02 3.95 16 5 C -0.06 -3.19 5.11 84.86 0.43 -2.75 16 6 N -0.94 -55.95 10.50 21.65 0.23 -55.72 16 7 Si 0.97 45.03 29.57 68.60 2.03 47.06 16 8 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 9 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 11 C 0.16 6.31 3.54 46.39 0.16 6.47 16 12 H 0.07 2.84 7.92 -2.38 -0.02 2.82 16 13 C -0.14 -3.84 6.48 31.78 0.21 -3.63 16 14 C 0.11 2.16 6.49 86.73 0.56 2.73 16 15 N -0.62 -18.22 3.33 -811.67 -2.70 -20.92 16 16 C 0.52 15.45 7.84 87.66 0.69 16.14 16 17 O -0.59 -23.70 16.29 -3.04 -0.05 -23.75 16 18 C -0.10 -1.73 5.34 29.10 0.16 -1.58 16 19 C -0.11 -2.31 8.18 24.53 0.20 -2.11 16 20 C -0.13 -2.71 9.31 23.64 0.22 -2.49 16 21 C -0.10 -2.11 5.87 -20.08 -0.12 -2.22 16 22 C -0.10 -1.83 9.40 22.51 0.21 -1.62 16 23 C -0.13 -1.70 10.03 22.23 0.22 -1.47 16 24 C -0.09 -1.07 10.04 22.31 0.22 -0.84 16 25 C -0.16 -2.33 10.01 22.28 0.22 -2.10 16 26 C 0.08 1.57 7.28 22.63 0.16 1.74 16 27 F -0.15 -3.23 16.62 44.97 0.75 -2.49 16 28 C 0.10 3.76 6.49 86.85 0.56 4.33 16 29 H 0.00 -0.23 7.43 -2.38 -0.02 -0.25 16 30 H 0.04 1.47 6.17 -2.39 -0.01 1.46 16 31 H 0.02 1.17 7.10 -2.39 -0.02 1.15 16 32 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.10 6.17 -2.39 -0.01 2.08 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.12 1.67 7.81 -2.39 -0.02 1.65 16 38 H 0.14 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.12 2.50 6.04 -2.91 -0.02 2.48 16 40 H 0.13 2.39 7.55 -2.91 -0.02 2.37 16 41 H 0.14 2.32 6.17 -2.91 -0.02 2.30 16 42 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 44 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.05 2.02 7.20 -2.39 -0.02 2.00 16 46 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 Total: -1.00 -74.49 379.85 5.10 -69.40 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.98 Total: 10.95 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 5.92 Total: 6.90 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -4.53 Total: -108.07 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.75 Total: -2.49 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.49 5.10 -69.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190890393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.191 kcal (2) G-P(sol) polarization free energy of solvation -74.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds