Wall clock time and date at job start Tue Mar 31 2020 16:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36941 * 119.99983 * 2 1 4 4 H 1.08001 * 120.00058 * 142.36655 * 3 2 1 5 5 C 1.38809 * 120.00262 * 322.35817 * 3 2 1 6 6 N 1.31613 * 120.00046 * 159.43577 * 5 3 2 7 7 Si 1.86799 * 119.99635 * 339.43883 * 5 3 2 8 8 H 1.48506 * 109.47108 * 94.27163 * 7 5 3 9 9 H 1.48505 * 109.47266 * 214.26409 * 7 5 3 10 10 H 1.48497 * 109.47493 * 334.26809 * 7 5 3 11 11 C 1.46500 * 119.99904 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.64232 * 178.31237 * 11 2 1 13 13 C 1.55154 * 110.72229 * 301.45568 * 11 2 1 14 14 C 1.54905 * 101.58215 * 154.04245 * 13 11 2 15 15 N 1.47421 * 104.83309 * 322.98928 * 14 13 11 16 16 C 1.34775 * 125.64831 * 204.09065 * 15 14 13 17 17 O 1.21284 * 119.99886 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00267 * 0.02751 * 16 15 14 19 19 C 1.50693 * 109.47173 * 179.97438 * 18 16 15 20 20 C 1.32592 * 119.99997 * 125.57356 * 19 18 16 21 21 C 1.47779 * 119.99611 * 7.52166 * 20 19 18 22 22 C 1.39540 * 120.15566 * 41.11668 * 21 20 19 23 23 C 1.37952 * 119.88116 * 179.71833 * 22 21 20 24 24 C 1.38386 * 120.19302 * 0.55276 * 23 22 21 25 25 C 1.38265 * 120.31317 * 359.71881 * 24 23 22 26 26 C 1.38244 * 120.11993 * 0.02562 * 25 24 23 27 27 F 1.35099 * 120.10001 * 180.02562 * 26 25 24 28 28 C 1.47023 * 108.70257 * 24.35781 * 15 14 13 29 29 H 1.08996 * 109.47456 * 272.08158 * 1 2 3 30 30 H 1.09009 * 109.46840 * 32.07840 * 1 2 3 31 31 H 1.09000 * 109.47340 * 152.07355 * 1 2 3 32 32 H 0.97007 * 119.99646 * 180.02562 * 6 5 3 33 33 H 1.09004 * 111.00271 * 35.96705 * 13 11 2 34 34 H 1.09003 * 111.03809 * 272.13554 * 13 11 2 35 35 H 1.09008 * 110.36530 * 204.14978 * 14 13 11 36 36 H 1.08996 * 110.45945 * 81.88091 * 14 13 11 37 37 H 1.08999 * 109.46715 * 300.00208 * 18 16 15 38 38 H 1.08997 * 109.46837 * 59.99882 * 18 16 15 39 39 H 1.07997 * 120.00176 * 305.57287 * 19 18 16 40 40 H 1.08000 * 120.00114 * 187.52318 * 20 19 18 41 41 H 1.08007 * 120.05596 * 359.97438 * 22 21 20 42 42 H 1.07998 * 119.90446 * 180.27366 * 23 22 21 43 43 H 1.08002 * 119.83764 * 179.74740 * 24 23 22 44 44 H 1.07999 * 119.94016 * 180.02562 * 25 24 23 45 45 H 1.09005 * 109.88145 * 118.12810 * 28 15 14 46 46 H 1.08988 * 109.88247 * 239.29309 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0611 1.2833 0.5711 5 6 1.6723 2.2630 -0.7341 6 7 2.0623 3.4849 -0.4393 7 14 0.4764 1.9780 -2.1406 8 1 -0.9152 2.1336 -1.6462 9 1 0.7329 2.9685 -3.2169 10 1 0.6608 0.6055 -2.6767 11 6 2.1974 -1.2687 0.0006 12 1 3.2726 -1.0918 -0.0296 13 6 1.8161 -2.1223 1.2389 14 6 2.1052 -3.5562 0.7292 15 7 1.6992 -3.5421 -0.6879 16 6 1.3358 -4.6194 -1.4117 17 8 1.0199 -4.4896 -2.5755 18 6 1.3220 -5.9852 -0.7750 19 6 0.8821 -7.0082 -1.7903 20 6 1.6400 -8.0685 -2.0344 21 6 2.8288 -8.3352 -1.1981 22 6 2.7698 -8.1493 0.1836 23 6 3.8812 -8.4056 0.9596 24 6 5.0573 -8.8354 0.3705 25 6 5.1263 -9.0169 -0.9985 26 6 4.0189 -8.7690 -1.7879 27 9 4.0866 -8.9469 -3.1254 28 6 1.7625 -2.1590 -1.1827 29 1 -0.3634 0.0373 1.0269 30 1 -0.3633 0.8708 -0.5458 31 1 -0.3634 -0.9080 -0.4813 32 1 1.7284 4.2376 -0.9521 33 1 0.7617 -2.0010 1.4872 34 1 2.4472 -1.8765 2.0929 35 1 1.5138 -4.2832 1.2860 36 1 3.1672 -3.7850 0.8174 37 1 2.3232 -6.2312 -0.4211 38 1 0.6287 -5.9870 0.0660 39 1 -0.0506 -6.8779 -2.3190 40 1 1.3885 -8.7370 -2.8445 41 1 1.8544 -7.8093 0.6451 42 1 3.8347 -8.2661 2.0295 43 1 5.9252 -9.0305 0.9830 44 1 6.0471 -9.3529 -1.4519 45 1 2.4909 -2.0873 -1.9905 46 1 0.7804 -1.8470 -1.5376 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190890394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:08 Heat of formation + Delta-G solvation = -18.824511 kcal Electronic energy + Delta-G solvation = -28129.346132 eV Core-core repulsion = 24127.186285 eV Total energy + Delta-G solvation = -4002.159847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.90348 -41.23635 -40.07752 -39.02893 -36.65278 -36.15114 -33.84649 -32.04782 -31.50509 -31.26603 -29.87027 -28.53032 -28.06242 -25.44893 -24.05213 -23.58097 -23.45721 -21.12683 -20.61637 -19.98069 -19.06417 -18.43053 -18.07347 -17.82442 -17.44041 -17.03036 -16.74634 -16.66226 -16.21400 -16.04725 -15.59095 -15.34678 -14.86924 -14.64596 -14.60918 -14.45486 -14.38360 -14.17868 -13.93335 -13.60191 -13.40261 -13.32775 -13.18395 -13.07724 -12.77903 -12.61171 -12.40066 -12.38397 -12.30883 -12.07073 -11.76394 -11.63599 -11.47834 -11.07961 -10.75574 -10.67981 -9.76819 -9.66820 -9.25611 -8.81960 -8.25130 -5.65303 -0.06439 0.25869 1.21636 1.24198 1.37565 1.46700 1.59657 2.03995 2.35465 2.70363 3.02282 3.27861 3.30627 3.55295 3.61529 3.79814 3.83727 3.89974 4.03401 4.14093 4.23625 4.31233 4.34556 4.39832 4.41513 4.45504 4.47950 4.50433 4.67654 4.73815 4.75726 4.89601 4.95631 4.97776 4.99199 5.12396 5.17343 5.22374 5.28111 5.30756 5.39292 5.47015 5.56692 5.63184 5.89293 5.97524 6.14816 6.55647 6.90989 7.12251 7.55536 7.98269 8.94056 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.002593 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.325961 B =10794.438366 C =11228.911970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.609 5.609 3 C -0.258 4.258 4 H 0.056 0.944 5 C -0.015 4.015 6 N -0.944 5.944 7 Si 0.941 3.059 8 H -0.273 1.273 9 H -0.310 1.310 10 H -0.272 1.272 11 C 0.163 3.837 12 H 0.080 0.920 13 C -0.137 4.137 14 C 0.103 3.897 15 N -0.614 5.614 16 C 0.519 3.481 17 O -0.597 6.597 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.132 4.132 21 C -0.104 4.104 22 C -0.090 4.090 23 C -0.121 4.121 24 C -0.091 4.091 25 C -0.162 4.162 26 C 0.070 3.930 27 F -0.155 7.155 28 C 0.091 3.909 29 H 0.037 0.963 30 H 0.021 0.979 31 H 0.053 0.947 32 H 0.264 0.736 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.159 0.841 42 H 0.166 0.834 43 H 0.160 0.840 44 H 0.144 0.856 45 H 0.040 0.960 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 -29.952 8.002 31.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.332 5.332 3 C -0.387 4.387 4 H 0.074 0.926 5 C -0.212 4.212 6 N -0.588 5.588 7 Si 0.771 3.229 8 H -0.200 1.200 9 H -0.239 1.239 10 H -0.197 1.197 11 C 0.055 3.945 12 H 0.098 0.902 13 C -0.177 4.177 14 C -0.018 4.018 15 N -0.347 5.347 16 C 0.309 3.691 17 O -0.478 6.478 18 C -0.147 4.147 19 C -0.131 4.131 20 C -0.150 4.150 21 C -0.105 4.105 22 C -0.108 4.108 23 C -0.139 4.139 24 C -0.108 4.108 25 C -0.181 4.181 26 C 0.051 3.949 27 F -0.134 7.134 28 C -0.035 4.035 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.177 0.823 42 H 0.183 0.817 43 H 0.178 0.822 44 H 0.162 0.838 45 H 0.059 0.941 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.959 -29.774 7.277 30.713 hybrid contribution -0.512 0.727 -1.990 2.180 sum 1.446 -29.047 5.287 29.560 Atomic orbital electron populations 1.21343 0.83895 0.98839 0.99459 1.44119 1.01245 1.01570 1.86300 1.18746 1.08731 0.88225 1.23027 0.92649 1.26013 1.00447 0.95194 0.99520 1.69940 1.48586 0.98763 1.41516 0.85939 0.79334 0.77069 0.80511 1.20012 1.23851 1.19705 1.21657 0.96233 0.84155 0.92458 0.90205 1.23188 1.02915 0.93432 0.98130 1.22627 1.01957 0.98259 0.78963 1.48639 1.66028 1.06144 1.13915 1.21111 0.75724 0.86512 0.85707 1.90687 1.50972 1.86865 1.19296 1.21195 1.06293 0.87738 0.99461 1.22887 0.99202 0.93185 0.97803 1.21553 0.94090 0.99898 0.99425 1.19295 0.92615 1.03142 0.95440 1.21630 1.00855 0.97752 0.90557 1.21617 0.92027 0.98250 1.02003 1.21495 0.99644 0.96610 0.93092 1.21383 0.97800 1.03481 0.95406 1.18265 0.96073 1.03618 0.76992 1.91446 1.96996 1.93242 1.31693 1.22449 1.00089 0.82268 0.98653 0.94455 0.96056 0.92865 0.92681 0.90794 0.88382 0.86653 0.89138 0.85893 0.84018 0.86360 0.85858 0.82343 0.81689 0.82197 0.83820 0.94116 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.50 8.33 127.77 1.06 5.56 16 2 N -0.61 -27.44 2.50 -696.14 -1.74 -29.19 16 3 C -0.26 -14.13 9.88 84.03 0.83 -13.30 16 4 H 0.06 3.28 8.06 -2.91 -0.02 3.26 16 5 C -0.01 -0.84 5.34 84.86 0.45 -0.39 16 6 N -0.94 -58.28 13.97 21.65 0.30 -57.98 16 7 Si 0.94 47.42 24.96 68.60 1.71 49.13 16 8 H -0.27 -13.04 6.65 99.48 0.66 -12.38 16 9 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 10 H -0.27 -13.65 7.11 99.48 0.71 -12.94 16 11 C 0.16 5.82 3.42 46.18 0.16 5.97 16 12 H 0.08 2.95 7.95 -2.38 -0.02 2.93 16 13 C -0.14 -3.37 6.65 31.98 0.21 -3.16 16 14 C 0.10 1.86 6.69 86.85 0.58 2.44 16 15 N -0.61 -17.01 3.33 -811.78 -2.70 -19.71 16 16 C 0.52 14.94 7.84 87.66 0.69 15.62 16 17 O -0.60 -23.53 16.36 -3.04 -0.05 -23.58 16 18 C -0.11 -1.87 3.57 29.10 0.10 -1.76 16 19 C -0.11 -2.23 8.70 24.53 0.21 -2.02 16 20 C -0.13 -2.57 9.43 23.64 0.22 -2.35 16 21 C -0.10 -1.84 5.08 -20.08 -0.10 -1.95 16 22 C -0.09 -0.99 7.32 22.52 0.16 -0.83 16 23 C -0.12 -0.95 10.03 22.24 0.22 -0.72 16 24 C -0.09 -0.84 10.04 22.31 0.22 -0.62 16 25 C -0.16 -2.36 10.01 22.28 0.22 -2.14 16 26 C 0.07 1.39 7.28 22.63 0.16 1.56 16 27 F -0.15 -3.80 16.83 44.97 0.76 -3.04 16 28 C 0.09 3.31 6.43 86.73 0.56 3.86 16 29 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 30 H 0.02 0.98 3.01 -2.38 -0.01 0.97 16 31 H 0.05 1.99 6.25 -2.39 -0.01 1.97 16 32 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 33 H 0.07 1.87 7.28 -2.39 -0.02 1.86 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.12 1.15 7.48 -2.38 -0.02 1.13 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 1.78 4.82 -2.39 -0.01 1.77 16 38 H 0.14 1.36 7.81 -2.39 -0.02 1.34 16 39 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.16 0.97 6.67 -2.91 -0.02 0.95 16 42 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 43 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 44 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 45 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.04 1.83 6.10 -2.39 -0.01 1.81 16 Total: -1.00 -77.85 371.44 5.21 -72.64 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.95 Total: 5.94 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.98 Total: 5.79 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -4.14 Total: -106.88 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.76 Total: -3.04 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.71 Total: 49.13 kcal Total: -77.85 5.21 -72.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190890394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.815 kcal (2) G-P(sol) polarization free energy of solvation -77.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds