Wall clock time and date at job start Tue Mar 31 2020 17:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.08998 * 110.64478 * 31.68302 * 3 2 1 5 5 C 1.54324 * 110.71808 * 268.54061 * 3 2 1 6 6 N 1.47019 * 107.27394 * 219.44366 * 5 3 2 7 7 C 1.36933 * 125.65214 * 178.90816 * 6 5 3 8 8 H 1.07996 * 120.00367 * 180.02562 * 7 6 5 9 9 C 1.38817 * 119.99822 * 0.02562 * 7 6 5 10 10 N 1.31622 * 119.99947 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46983 * 90.00057 * 11 9 7 13 13 H 1.48503 * 109.47186 * 210.00419 * 11 9 7 14 14 H 1.48506 * 109.47078 * 330.00351 * 11 9 7 15 15 C 1.47431 * 108.70152 * 358.94200 * 6 5 3 16 16 C 1.54910 * 104.83085 * 24.12700 * 15 6 5 17 17 H 1.09004 * 111.00104 * 81.05998 * 16 15 6 18 18 N 1.46498 * 111.00518 * 204.90996 * 16 15 6 19 19 C 1.34772 * 120.00287 * 267.20081 * 18 16 15 20 20 O 1.21280 * 120.00126 * 359.97438 * 19 18 16 21 21 C 1.50706 * 120.00043 * 180.02562 * 19 18 16 22 22 C 1.52995 * 110.43601 * 57.45295 * 21 19 18 23 23 F 1.39908 * 109.47322 * 300.70305 * 22 21 19 24 24 F 1.39899 * 109.47129 * 60.70324 * 22 21 19 25 25 C 1.54894 * 110.47949 * 294.77169 * 21 19 18 26 26 C 1.54882 * 102.74797 * 279.26164 * 25 21 19 27 27 C 1.54261 * 104.19879 * 322.06057 * 26 25 21 28 28 C 1.53876 * 106.59877 * 23.60937 * 27 26 25 29 29 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 31 31 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 32 32 H 1.08996 * 109.88773 * 338.86697 * 5 3 2 33 33 H 1.09000 * 109.88163 * 99.87373 * 5 3 2 34 34 H 0.96995 * 119.99619 * 179.97438 * 10 9 7 35 35 H 1.09005 * 110.36436 * 142.96104 * 15 6 5 36 36 H 1.09000 * 110.37116 * 265.28665 * 15 6 5 37 37 H 0.97001 * 119.99412 * 87.19992 * 18 16 15 38 38 H 1.09003 * 109.47088 * 180.70284 * 22 21 19 39 39 H 1.08998 * 110.75944 * 37.58465 * 25 21 19 40 40 H 1.09005 * 110.75191 * 160.95166 * 25 21 19 41 41 H 1.09003 * 110.48769 * 203.38062 * 26 25 21 42 42 H 1.09006 * 110.48930 * 80.74112 * 26 25 21 43 43 H 1.09000 * 110.03704 * 264.32603 * 27 26 25 44 44 H 1.09005 * 110.07569 * 142.91778 * 27 26 25 45 45 H 1.08993 * 110.03366 * 240.71427 * 28 27 26 46 46 H 1.09002 * 110.07185 * 119.30366 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3736 2.0096 0.5357 5 6 2.2658 1.7893 -1.4430 6 7 3.5562 2.4939 -1.4450 7 6 4.1560 3.0576 -2.5394 8 1 5.1091 3.5550 -2.4365 9 6 3.5389 2.9898 -3.7810 10 7 2.3771 2.3840 -3.9063 11 14 4.3574 3.7581 -5.2740 12 1 5.2322 2.7538 -5.9306 13 1 3.3162 4.2095 -6.2319 14 1 5.1745 4.9221 -4.8463 15 6 4.0979 2.4923 -0.0738 16 6 3.4352 1.2720 0.6128 17 1 3.9515 0.3484 0.3510 18 7 3.3863 1.4498 2.0662 19 6 4.3813 0.9694 2.8378 20 8 5.3172 0.3895 2.3291 21 6 4.3306 1.1518 4.3329 22 6 3.0499 0.5388 4.9027 23 9 1.9379 1.1543 4.3179 24 9 3.0247 -0.8319 4.6236 25 6 4.4256 2.6538 4.6991 26 6 5.9464 2.9324 4.6077 27 6 6.5999 1.6536 5.1709 28 6 5.5725 0.5214 4.9962 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 2.3089 0.9349 -2.1184 33 1 1.4704 2.4669 -1.7531 34 1 1.9458 2.3369 -4.7738 35 1 5.1813 2.3741 -0.0941 36 1 3.8254 3.4125 0.4428 37 1 2.6376 1.9133 2.4730 38 1 3.0234 0.6903 5.9818 39 1 3.8774 3.2623 3.9799 40 1 4.0611 2.8283 5.7115 41 1 6.2132 3.7968 5.2159 42 1 6.2441 3.0880 3.5707 43 1 6.8322 1.7871 6.2274 44 1 7.5088 1.4220 4.6154 45 1 5.3063 0.1056 5.9679 46 1 5.9819 -0.2597 4.3556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213330625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:08 Heat of formation + Delta-G solvation = -159.985132 kcal Electronic energy + Delta-G solvation = -30992.385428 eV Core-core repulsion = 26553.335173 eV Total energy + Delta-G solvation = -4439.050256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.24308 -47.21469 -40.36265 -38.52514 -37.11327 -35.82889 -34.08579 -31.88851 -30.84477 -29.11259 -28.64742 -27.12169 -26.08635 -25.02936 -24.31682 -22.66762 -20.84442 -20.50996 -20.18781 -19.56173 -18.00711 -17.43590 -17.24210 -17.03989 -16.37887 -16.23874 -15.52431 -15.43165 -14.77869 -14.54462 -14.33301 -14.18359 -14.15729 -13.90770 -13.57795 -13.54953 -13.49084 -13.20063 -12.81110 -12.32950 -12.22754 -11.91521 -11.81403 -11.62691 -11.51317 -11.43385 -11.36531 -11.20267 -11.03956 -10.98419 -10.79995 -10.73135 -10.64472 -10.14231 -9.96137 -9.79409 -9.69565 -9.08190 -8.74040 -8.56519 -6.88182 -5.72410 -3.07593 2.58317 3.13208 3.41360 3.45976 3.47455 3.48063 3.83751 3.89498 4.12753 4.19363 4.49516 4.53512 4.67194 4.74601 4.96673 5.03785 5.13097 5.17972 5.20749 5.38519 5.44720 5.50897 5.51388 5.63563 5.65188 5.68452 5.70705 5.75091 5.89709 5.91911 5.95060 5.98520 6.07148 6.15554 6.19547 6.52403 6.61305 6.86730 7.28309 7.49307 7.66273 7.73341 7.89184 8.20735 8.34440 9.18140 9.78321 10.41698 11.38924 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003805 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.077376 B = 7357.791854 C = 8639.298627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.061 0.939 5 C 0.164 3.836 6 N -0.599 5.599 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.922 5.922 11 Si 0.914 3.086 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.132 3.868 16 C 0.133 3.867 17 H 0.107 0.893 18 N -0.709 5.709 19 C 0.529 3.471 20 O -0.523 6.523 21 C -0.140 4.140 22 C 0.277 3.723 23 F -0.200 7.200 24 F -0.196 7.196 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.103 4.103 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.253 0.747 35 H 0.049 0.951 36 H 0.023 0.977 37 H 0.399 0.601 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -0.837 22.646 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.079 0.921 5 C 0.039 3.961 6 N -0.327 5.327 7 C -0.357 4.357 8 H 0.098 0.902 9 C -0.203 4.203 10 N -0.569 5.569 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.005 3.995 16 C 0.028 3.972 17 H 0.125 0.875 18 N -0.361 5.361 19 C 0.313 3.687 20 O -0.399 6.399 21 C -0.144 4.144 22 C 0.223 3.777 23 F -0.181 7.181 24 F -0.177 7.177 25 C -0.145 4.145 26 C -0.162 4.162 27 C -0.157 4.157 28 C -0.141 4.141 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.235 0.765 38 H 0.137 0.863 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.359 -1.426 22.001 22.050 hybrid contribution -0.490 0.734 -0.726 1.142 sum -0.131 -0.692 21.276 21.287 Atomic orbital electron populations 1.22696 0.81703 1.02015 0.99794 1.87905 1.19154 1.27450 1.95062 1.23825 0.92622 0.84207 0.99651 0.92059 1.21584 0.88542 0.96923 0.89100 1.44245 1.20144 1.65702 1.02634 1.19071 1.02454 1.28841 0.85352 0.90165 1.24817 0.97149 1.00693 0.97610 1.69943 1.16286 1.47506 1.23184 0.86081 0.78147 0.78717 0.82581 1.21492 1.21663 1.20654 1.21807 0.97347 0.93554 0.86807 1.22398 0.96308 1.01214 0.77304 0.87541 1.46049 1.24063 1.58270 1.07689 1.19723 0.82837 0.78757 0.87414 1.90701 1.33548 1.41309 1.74311 1.22928 0.96413 0.99906 0.95194 1.21908 0.82917 0.74827 0.98012 1.92939 1.55693 1.82677 1.86770 1.93039 1.96663 1.32506 1.95486 1.22560 0.98524 0.90881 1.02582 1.22364 0.93558 0.97954 1.02284 1.22078 0.98693 0.93940 1.00944 1.22074 0.92404 0.99347 1.00298 0.90287 0.94813 0.93580 0.91977 0.93371 0.93664 0.93233 0.95987 0.76480 0.86267 0.90024 0.89745 0.90781 0.90848 0.91512 0.91021 0.90864 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.88 101.05 1.10 1.63 16 2 O -0.38 -7.41 10.43 -35.23 -0.37 -7.77 16 3 C 0.06 1.11 3.05 -24.90 -0.08 1.04 16 4 H 0.06 1.09 7.74 -51.93 -0.40 0.69 16 5 C 0.16 4.06 5.15 -3.07 -0.02 4.05 16 6 N -0.60 -15.63 3.39 -170.07 -0.58 -16.20 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 9 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 10 N -0.92 -27.17 10.31 55.49 0.57 -26.59 16 11 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.13 2.87 6.93 -2.52 -0.02 2.85 16 16 C 0.13 2.62 3.15 -65.78 -0.21 2.41 16 17 H 0.11 2.40 7.54 -51.93 -0.39 2.01 16 18 N -0.71 -11.24 4.76 -51.73 -0.25 -11.48 16 19 C 0.53 8.21 6.09 -10.98 -0.07 8.14 16 20 O -0.52 -10.10 15.08 5.56 0.08 -10.01 16 21 C -0.14 -1.50 0.47 -154.00 -0.07 -1.57 16 22 C 0.28 2.67 4.12 37.16 0.15 2.82 16 23 F -0.20 -2.16 14.89 2.25 0.03 -2.12 16 24 F -0.20 -2.48 16.90 2.25 0.04 -2.45 16 25 C -0.11 -0.89 5.66 -24.74 -0.14 -1.03 16 26 C -0.12 -1.09 6.61 -25.08 -0.17 -1.25 16 27 C -0.12 -1.01 6.80 -25.62 -0.17 -1.19 16 28 C -0.10 -1.00 5.55 -25.62 -0.14 -1.15 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.03 0.45 8.11 -51.93 -0.42 0.03 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.75 7.30 -51.93 -0.38 1.37 16 33 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.40 5.48 6.51 -40.82 -0.27 5.22 16 38 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.72 7.81 -51.93 -0.41 0.32 16 40 H 0.08 0.47 8.06 -51.93 -0.42 0.05 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.52 7.83 -51.93 -0.41 0.11 16 46 H 0.09 1.16 6.89 -51.93 -0.36 0.81 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -33.59 371.55 -7.15 -40.74 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.19 Total: 3.19 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -0.07 Total: 9.86 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.25 Total: -54.28 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.28 Total: -17.79 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.07 Total: -4.57 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.59 -7.15 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213330625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.245 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds