Wall clock time and date at job start Tue Mar 31 2020 17:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.08998 * 110.64478 * 31.68302 * 3 2 1 5 5 C 1.54324 * 110.71808 * 268.54061 * 3 2 1 6 6 N 1.47019 * 107.27394 * 219.44366 * 5 3 2 7 7 C 1.36933 * 125.65214 * 178.90816 * 6 5 3 8 8 H 1.07996 * 120.00367 * 180.02562 * 7 6 5 9 9 C 1.38817 * 119.99822 * 0.02562 * 7 6 5 10 10 N 1.31622 * 119.99947 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46983 * 90.00057 * 11 9 7 13 13 H 1.48503 * 109.47186 * 210.00419 * 11 9 7 14 14 H 1.48506 * 109.47078 * 330.00351 * 11 9 7 15 15 C 1.47431 * 108.70152 * 358.94200 * 6 5 3 16 16 C 1.54910 * 104.83085 * 24.12700 * 15 6 5 17 17 H 1.09004 * 111.00104 * 81.05998 * 16 15 6 18 18 N 1.46498 * 111.00518 * 204.90996 * 16 15 6 19 19 C 1.34772 * 120.00287 * 267.20081 * 18 16 15 20 20 O 1.21280 * 120.00126 * 359.97438 * 19 18 16 21 21 C 1.50706 * 120.00043 * 180.02562 * 19 18 16 22 22 C 1.52995 * 110.43601 * 57.45295 * 21 19 18 23 23 F 1.39908 * 109.47322 * 300.70305 * 22 21 19 24 24 F 1.39899 * 109.47129 * 60.70324 * 22 21 19 25 25 C 1.54894 * 110.47949 * 294.77169 * 21 19 18 26 26 C 1.54882 * 102.74797 * 279.26164 * 25 21 19 27 27 C 1.54261 * 104.19879 * 322.06057 * 26 25 21 28 28 C 1.53876 * 106.59877 * 23.60937 * 27 26 25 29 29 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 31 31 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 32 32 H 1.08996 * 109.88773 * 338.86697 * 5 3 2 33 33 H 1.09000 * 109.88163 * 99.87373 * 5 3 2 34 34 H 0.96995 * 119.99619 * 179.97438 * 10 9 7 35 35 H 1.09005 * 110.36436 * 142.96104 * 15 6 5 36 36 H 1.09000 * 110.37116 * 265.28665 * 15 6 5 37 37 H 0.97001 * 119.99412 * 87.19992 * 18 16 15 38 38 H 1.09003 * 109.47088 * 180.70284 * 22 21 19 39 39 H 1.08998 * 110.75944 * 37.58465 * 25 21 19 40 40 H 1.09005 * 110.75191 * 160.95166 * 25 21 19 41 41 H 1.09003 * 110.48769 * 203.38062 * 26 25 21 42 42 H 1.09006 * 110.48930 * 80.74112 * 26 25 21 43 43 H 1.09000 * 110.03704 * 264.32603 * 27 26 25 44 44 H 1.09005 * 110.07569 * 142.91778 * 27 26 25 45 45 H 1.08993 * 110.03366 * 240.71427 * 28 27 26 46 46 H 1.09002 * 110.07185 * 119.30366 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3736 2.0096 0.5357 5 6 2.2658 1.7893 -1.4430 6 7 3.5562 2.4939 -1.4450 7 6 4.1560 3.0576 -2.5394 8 1 5.1091 3.5550 -2.4365 9 6 3.5389 2.9898 -3.7810 10 7 2.3771 2.3840 -3.9063 11 14 4.3574 3.7581 -5.2740 12 1 5.2322 2.7538 -5.9306 13 1 3.3162 4.2095 -6.2319 14 1 5.1745 4.9221 -4.8463 15 6 4.0979 2.4923 -0.0738 16 6 3.4352 1.2720 0.6128 17 1 3.9515 0.3484 0.3510 18 7 3.3863 1.4498 2.0662 19 6 4.3813 0.9694 2.8378 20 8 5.3172 0.3895 2.3291 21 6 4.3306 1.1518 4.3329 22 6 3.0499 0.5388 4.9027 23 9 1.9379 1.1543 4.3179 24 9 3.0247 -0.8319 4.6236 25 6 4.4256 2.6538 4.6991 26 6 5.9464 2.9324 4.6077 27 6 6.5999 1.6536 5.1709 28 6 5.5725 0.5214 4.9962 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 2.3089 0.9349 -2.1184 33 1 1.4704 2.4669 -1.7531 34 1 1.9458 2.3369 -4.7738 35 1 5.1813 2.3741 -0.0941 36 1 3.8254 3.4125 0.4428 37 1 2.6376 1.9133 2.4730 38 1 3.0234 0.6903 5.9818 39 1 3.8774 3.2623 3.9799 40 1 4.0611 2.8283 5.7115 41 1 6.2132 3.7968 5.2159 42 1 6.2441 3.0880 3.5707 43 1 6.8322 1.7871 6.2274 44 1 7.5088 1.4220 4.6154 45 1 5.3063 0.1056 5.9679 46 1 5.9819 -0.2597 4.3556 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213330625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:07 Heat of formation + Delta-G solvation = -183.283188 kcal Electronic energy + Delta-G solvation = -30993.395708 eV Core-core repulsion = 26553.335173 eV Total energy + Delta-G solvation = -4440.060535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.03057 -48.02525 -41.55235 -40.04540 -38.18532 -37.50370 -35.70910 -33.76422 -31.80351 -30.53868 -29.70868 -28.85083 -27.59571 -26.26166 -25.64089 -23.88082 -22.26655 -22.03714 -21.41021 -20.73440 -19.18000 -18.74397 -18.36697 -18.03888 -17.76522 -17.36650 -17.09074 -16.64860 -16.25053 -15.88938 -15.82600 -15.56177 -15.28013 -15.11473 -14.87063 -14.55737 -14.42433 -14.37209 -14.25409 -14.03845 -13.66922 -13.24426 -13.10923 -13.02790 -12.77217 -12.68401 -12.54927 -12.37606 -12.32200 -12.15689 -12.09267 -12.03091 -11.89160 -11.79806 -11.67835 -11.33755 -10.96662 -10.80014 -10.61723 -10.17658 -9.00618 -7.89589 -5.28459 1.40802 1.44630 1.47444 1.55779 1.89167 2.44460 2.70887 2.72411 3.06156 3.21933 3.28611 3.31967 3.46986 3.66320 3.81990 3.87080 3.98722 3.98940 4.05594 4.22543 4.31280 4.38306 4.40073 4.46121 4.53425 4.54707 4.60075 4.71888 4.75278 4.82145 4.85432 4.91409 5.04555 5.06682 5.23407 5.26634 5.28347 5.33339 5.39647 5.48721 5.61612 6.09924 6.25748 6.40727 7.01388 7.10699 7.66277 8.29353 9.20077 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003805 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.077376 B = 7357.791854 C = 8639.298627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.075 3.925 4 H 0.092 0.908 5 C 0.176 3.824 6 N -0.620 5.620 7 C -0.250 4.250 8 H 0.084 0.916 9 C -0.061 4.061 10 N -0.949 5.949 11 Si 0.983 3.017 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.266 1.266 15 C 0.136 3.864 16 C 0.149 3.851 17 H 0.071 0.929 18 N -0.700 5.700 19 C 0.521 3.479 20 O -0.570 6.570 21 C -0.137 4.137 22 C 0.271 3.729 23 F -0.207 7.207 24 F -0.218 7.218 25 C -0.101 4.101 26 C -0.127 4.127 27 C -0.117 4.117 28 C -0.104 4.104 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.017 0.983 33 H 0.024 0.976 34 H 0.249 0.751 35 H 0.035 0.965 36 H 0.044 0.956 37 H 0.413 0.587 38 H 0.180 0.820 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.037 0.963 43 H 0.100 0.900 44 H 0.049 0.951 45 H 0.110 0.890 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 0.408 26.058 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.016 3.984 4 H 0.110 0.890 5 C 0.050 3.950 6 N -0.348 5.348 7 C -0.378 4.378 8 H 0.102 0.898 9 C -0.254 4.254 10 N -0.597 5.597 11 Si 0.810 3.190 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.191 1.191 15 C 0.009 3.991 16 C 0.042 3.958 17 H 0.090 0.910 18 N -0.353 5.353 19 C 0.307 3.693 20 O -0.448 6.448 21 C -0.141 4.141 22 C 0.218 3.782 23 F -0.188 7.188 24 F -0.199 7.199 25 C -0.139 4.139 26 C -0.164 4.164 27 C -0.154 4.154 28 C -0.142 4.142 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.252 0.748 38 H 0.197 0.803 39 H 0.094 0.906 40 H 0.148 0.852 41 H 0.118 0.882 42 H 0.056 0.944 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.128 0.872 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.284 -0.168 25.465 25.467 hybrid contribution -0.268 0.297 -1.785 1.829 sum -0.551 0.129 23.680 23.687 Atomic orbital electron populations 1.22969 0.79309 1.03892 1.00690 1.87887 1.21829 1.27030 1.94978 1.23511 0.93264 0.85128 0.96488 0.89019 1.21295 0.87516 0.94573 0.91617 1.44510 1.20825 1.65625 1.03856 1.19461 1.02837 1.28992 0.86511 0.89825 1.25694 0.97851 1.01433 1.00409 1.70164 1.17555 1.48590 1.23420 0.85022 0.77149 0.78101 0.78684 1.21504 1.21579 1.19095 1.21878 0.96586 0.95277 0.85367 1.21835 0.95544 0.98572 0.79821 0.91036 1.45892 1.24967 1.58615 1.05815 1.20766 0.81514 0.77185 0.89794 1.90685 1.35236 1.43108 1.75813 1.23016 0.97980 1.02311 0.90764 1.22520 0.81601 0.73348 1.00749 1.92919 1.55975 1.82664 1.87225 1.93002 1.96680 1.34389 1.95823 1.22676 0.97916 0.88342 1.04929 1.22383 0.94298 0.99094 1.00671 1.22094 0.97425 0.93311 1.02599 1.22123 0.92137 0.98808 1.01113 0.88066 0.92017 0.94463 0.96438 0.95759 0.94157 0.94633 0.93839 0.74832 0.80310 0.90612 0.85231 0.88220 0.94428 0.88185 0.93219 0.87208 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.88 113.37 1.23 2.04 16 2 O -0.40 -15.74 10.43 -148.98 -1.55 -17.29 16 3 C 0.08 3.03 3.05 31.78 0.10 3.13 16 4 H 0.09 3.13 7.74 -2.39 -0.02 3.11 16 5 C 0.18 9.11 5.15 86.73 0.45 9.56 16 6 N -0.62 -33.57 3.39 -691.98 -2.35 -35.92 16 7 C -0.25 -14.51 10.28 84.04 0.86 -13.65 16 8 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 9 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 10 N -0.95 -58.03 10.31 21.65 0.22 -57.80 16 11 Si 0.98 46.65 29.55 68.60 2.03 48.67 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 C 0.14 6.05 6.93 86.85 0.60 6.65 16 16 C 0.15 6.03 3.15 46.38 0.15 6.18 16 17 H 0.07 3.42 7.54 -2.38 -0.02 3.41 16 18 N -0.70 -21.91 4.76 -435.96 -2.07 -23.99 16 19 C 0.52 16.18 6.09 87.66 0.53 16.71 16 20 O -0.57 -23.13 15.08 -3.03 -0.05 -23.17 16 21 C -0.14 -2.59 0.47 -51.85 -0.02 -2.61 16 22 C 0.27 4.18 4.12 71.98 0.30 4.48 16 23 F -0.21 -3.73 14.89 44.97 0.67 -3.06 16 24 F -0.22 -5.06 16.90 44.97 0.76 -4.30 16 25 C -0.10 -1.29 5.66 31.88 0.18 -1.11 16 26 C -0.13 -1.93 6.61 31.66 0.21 -1.72 16 27 C -0.12 -1.74 6.80 31.32 0.21 -1.52 16 28 C -0.10 -1.80 5.55 31.32 0.17 -1.63 16 29 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.02 1.04 7.30 -2.39 -0.02 1.03 16 33 H 0.02 1.35 7.50 -2.39 -0.02 1.33 16 34 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.41 10.59 6.51 -92.71 -0.60 9.98 16 38 H 0.18 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 1.10 7.81 -2.39 -0.02 1.08 16 40 H 0.13 0.58 8.06 -2.38 -0.02 0.56 16 41 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.11 1.09 7.83 -2.39 -0.02 1.07 16 46 H 0.06 1.43 6.89 -2.39 -0.02 1.42 16 Total: -1.00 -79.49 371.55 3.48 -76.01 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.38 Total: 17.40 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 5.44 Total: 23.44 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -4.20 Total: -117.71 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.60 Total: -40.46 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 1.43 Total: -7.35 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -79.49 3.48 -76.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213330625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.269 kcal (2) G-P(sol) polarization free energy of solvation -79.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds