Wall clock time and date at job start Tue Mar 31 2020 16:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00457 * 2 1 4 4 C 1.52999 * 109.46858 * 270.00137 * 3 2 1 5 5 H 1.08998 * 112.79167 * 284.18775 * 4 3 2 6 6 C 1.53515 * 113.47466 * 153.37683 * 4 3 2 7 7 C 1.53509 * 83.57837 * 219.20833 * 6 4 3 8 8 N 1.47483 * 87.93118 * 26.02651 * 7 6 4 9 9 C 1.46899 * 110.99885 * 221.29872 * 8 7 6 10 10 C 1.53005 * 109.47133 * 294.82153 * 9 8 7 11 11 C 1.53000 * 109.47131 * 182.85916 * 10 9 8 12 12 C 1.52998 * 109.46687 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46849 * 179.97438 * 12 11 10 14 14 F 1.39899 * 109.46748 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99654 * 180.02562 * 2 1 3 16 16 O 1.21279 * 120.00220 * 179.97438 * 15 2 1 17 17 C 1.50704 * 119.99817 * 359.97438 * 15 2 1 18 18 S 1.81004 * 109.46649 * 180.02562 * 17 15 2 19 19 C 1.76202 * 99.99760 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99663 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00226 * 179.97438 * 19 18 17 22 22 N 1.31630 * 120.00360 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46931 * 89.99897 * 23 21 19 25 25 H 1.48493 * 109.46984 * 209.99735 * 23 21 19 26 26 H 1.48503 * 109.46930 * 330.00098 * 23 21 19 27 27 H 1.09000 * 109.47421 * 89.99855 * 1 2 3 28 28 H 1.09000 * 109.47310 * 210.00315 * 1 2 3 29 29 H 1.09007 * 109.46864 * 329.99714 * 1 2 3 30 30 H 1.08997 * 109.47229 * 150.00113 * 3 2 1 31 31 H 1.09003 * 109.46808 * 29.99791 * 3 2 1 32 32 H 1.08998 * 114.16895 * 105.56036 * 6 4 3 33 33 H 1.09000 * 114.17187 * 332.85745 * 6 4 3 34 34 H 1.08999 * 113.47929 * 271.26143 * 7 6 4 35 35 H 1.09002 * 113.47524 * 140.78782 * 7 6 4 36 36 H 1.09002 * 109.46725 * 174.82761 * 9 8 7 37 37 H 1.08991 * 109.47525 * 54.82522 * 9 8 7 38 38 H 1.09002 * 109.46947 * 62.85817 * 10 9 8 39 39 H 1.09005 * 109.47043 * 302.86207 * 10 9 8 40 40 H 1.09002 * 109.47285 * 60.00108 * 11 10 9 41 41 H 1.08992 * 109.47047 * 300.00092 * 11 10 9 42 42 H 1.09004 * 109.47550 * 299.99420 * 12 11 10 43 43 H 1.08993 * 109.47466 * 60.00036 * 12 11 10 44 44 H 1.08992 * 109.47115 * 300.00098 * 13 12 11 45 45 H 1.09005 * 109.46563 * 59.99935 * 13 12 11 46 46 H 1.08995 * 109.47637 * 300.00352 * 17 15 2 47 47 H 1.09000 * 109.46950 * 60.00676 * 17 15 2 48 48 H 0.96999 * 120.00621 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 3.2505 1.1439 -1.9227 6 6 2.6016 3.2301 -1.5995 7 6 1.7996 3.0021 -2.8884 8 7 1.2250 1.8005 -2.2550 9 6 1.1442 0.6888 -3.2118 10 6 0.1560 1.0443 -4.3245 11 6 0.0180 -0.1411 -5.2819 12 6 -0.9697 0.2147 -6.3949 13 6 -1.1073 -0.9705 -7.3527 14 9 -2.0109 -0.6453 -8.3701 15 6 2.1388 -1.1672 -0.0005 16 8 3.3516 -1.1674 -0.0010 17 6 1.3852 -2.4723 -0.0005 18 16 2.5614 -3.8481 -0.0005 19 6 1.4412 -5.2082 -0.0013 20 1 0.3759 -5.0304 -0.0020 21 6 1.9278 -6.5081 -0.0020 22 7 1.0910 -7.5242 -0.0021 23 14 3.7704 -6.8156 -0.0030 24 1 4.2592 -6.8977 1.3969 25 1 4.0587 -8.0927 -0.7036 26 1 4.4579 -5.7008 -0.7028 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 3.1500 1.1383 0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.6261 3.5634 -1.7644 33 1 2.0743 3.8108 -0.8426 34 1 2.4232 2.7804 -3.7545 35 1 1.0644 3.7823 -3.0861 36 1 0.8037 -0.2096 -2.6969 37 1 2.1285 0.5089 -3.6438 38 1 0.5223 1.9128 -4.8719 39 1 -0.8160 1.2737 -3.8876 40 1 -0.3484 -1.0096 -4.7345 41 1 0.9898 -0.3704 -5.7187 42 1 -1.9418 0.4443 -5.9584 43 1 -0.6030 1.0830 -6.9422 44 1 -0.1353 -1.1997 -7.7892 45 1 -1.4739 -1.8391 -6.8056 46 1 0.7588 -2.5303 0.8896 47 1 0.7583 -2.5298 -0.8903 48 1 1.4311 -8.4326 -0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:14 Heat of formation + Delta-G solvation = -68.032653 kcal Electronic energy + Delta-G solvation = -26701.314989 eV Core-core repulsion = 22832.465268 eV Total energy + Delta-G solvation = -3868.849721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -47.82583 -40.75290 -39.09882 -36.15643 -35.18322 -32.45091 -32.35179 -30.44051 -28.56045 -28.00898 -26.26520 -25.61251 -24.75731 -23.45527 -21.95524 -21.20792 -20.05244 -19.15922 -17.64239 -16.81807 -16.73388 -16.43912 -16.24106 -15.95995 -15.65535 -15.29733 -15.26625 -14.97083 -14.64064 -14.36285 -13.75334 -13.64902 -13.33167 -13.16287 -12.90781 -12.78149 -12.69603 -12.39704 -12.32704 -12.08272 -11.99957 -11.70583 -11.61096 -11.36778 -11.28504 -11.26091 -11.11898 -11.02173 -10.86825 -10.69069 -10.65676 -10.52807 -9.86831 -9.45490 -9.17465 -9.01534 -8.50512 -8.43996 -6.93083 -6.30108 -4.01788 2.73346 2.95872 3.21460 3.31906 3.48793 3.57943 3.75108 4.17851 4.26364 4.31730 4.43946 4.55574 4.56120 4.66733 4.75872 4.80239 4.93066 4.95942 5.01200 5.08922 5.09940 5.14849 5.19077 5.25601 5.28779 5.37397 5.43328 5.48238 5.50784 5.53702 5.55173 5.59074 5.63763 5.72396 5.78423 5.81315 5.86762 5.89272 5.99109 6.01884 6.03477 6.22099 6.63036 6.86910 7.51932 7.92944 8.40340 8.47303 9.16232 10.79141 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007704 B = 0.003523 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.719609 B = 7946.354800 C =10782.985775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.613 5.613 3 C 0.137 3.863 4 C 0.012 3.988 5 H 0.082 0.918 6 C -0.139 4.139 7 C -0.003 4.003 8 N -0.460 5.460 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.120 4.120 12 C -0.149 4.149 13 C 0.058 3.942 14 F -0.222 7.222 15 C 0.529 3.471 16 O -0.522 6.522 17 C -0.119 4.119 18 S -0.145 6.145 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 22.716 -8.197 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.348 5.348 3 C 0.014 3.986 4 C -0.098 4.098 5 H 0.100 0.900 6 C -0.178 4.178 7 C -0.131 4.131 8 N -0.182 5.182 9 C -0.109 4.109 10 C -0.149 4.149 11 C -0.158 4.158 12 C -0.187 4.187 13 C 0.003 3.997 14 F -0.204 7.204 15 C 0.317 3.683 16 O -0.397 6.397 17 C -0.270 4.270 18 S 0.082 5.918 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.160 1.160 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.770 22.499 -7.913 23.916 hybrid contribution -0.144 -0.626 -0.561 0.853 sum -1.914 21.874 -8.475 23.536 Atomic orbital electron populations 1.21774 0.79205 1.02516 1.02131 1.47694 1.07071 1.05242 1.74805 1.21366 0.97866 0.84906 0.94499 1.23882 0.92832 0.96361 0.96743 0.90027 1.23194 1.00755 0.95519 0.98289 1.23669 0.97728 0.95294 0.96459 1.68917 1.31631 1.03186 1.14505 1.22697 0.98592 0.95872 0.93693 1.21507 1.00114 0.97730 0.95574 1.21481 0.99288 0.98966 0.96092 1.22143 1.01211 0.98304 0.97073 1.22067 0.92051 0.98748 0.86856 1.92756 1.70501 1.94442 1.62671 1.20308 0.87904 0.84741 0.75367 1.90680 1.13739 1.86915 1.48413 1.23300 1.02971 0.95274 1.05440 1.84776 1.12072 0.97593 1.97408 1.22307 0.94852 0.90894 1.58726 0.89438 1.24701 0.98463 0.94870 0.93188 1.69935 1.34783 0.98880 1.48118 0.86748 0.85446 0.79780 0.79956 1.19202 1.19956 1.15971 0.92253 0.91318 0.91394 0.89694 0.90291 0.90627 0.88788 0.91627 0.89870 0.90105 0.94205 0.92176 0.91053 0.91019 0.91600 0.90724 0.91027 0.90771 0.90475 0.88635 0.88789 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 9.79 59.85 0.59 1.51 16 2 N -0.61 -8.14 2.78 -181.57 -0.50 -8.64 16 3 C 0.14 1.54 5.60 -4.04 -0.02 1.52 16 4 C 0.01 0.13 3.37 -71.42 -0.24 -0.11 16 5 H 0.08 1.02 7.62 -51.93 -0.40 0.62 16 6 C -0.14 -1.04 8.00 -26.20 -0.21 -1.25 16 7 C 0.00 -0.02 6.62 -7.54 -0.05 -0.07 16 8 N -0.46 -4.38 5.50 -236.48 -1.30 -5.68 16 9 C 0.02 0.20 4.71 -3.82 -0.02 0.19 16 10 C -0.11 -0.92 5.15 -26.73 -0.14 -1.06 16 11 C -0.12 -0.96 5.21 -26.73 -0.14 -1.10 16 12 C -0.15 -1.12 5.67 -26.73 -0.15 -1.27 16 13 C 0.06 0.46 7.55 37.16 0.28 0.75 16 14 F -0.22 -2.40 17.36 2.25 0.04 -2.36 16 15 C 0.53 9.42 7.69 -10.98 -0.08 9.34 16 16 O -0.52 -11.11 15.44 5.56 0.09 -11.03 16 17 C -0.12 -2.32 4.71 36.01 0.17 -2.15 16 18 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 19 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 20 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.43 13.97 55.49 0.78 -25.66 16 23 Si 0.86 21.69 27.74 -169.99 -4.72 16.98 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 27 H 0.06 0.62 6.46 -51.93 -0.34 0.28 16 28 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 29 H 0.07 0.59 7.89 -51.92 -0.41 0.18 16 30 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 31 H 0.08 0.72 7.63 -51.93 -0.40 0.32 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.63 7.94 -51.93 -0.41 0.21 16 34 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.97 6.91 -51.93 -0.36 0.61 16 37 H 0.04 0.44 7.56 -51.93 -0.39 0.05 16 38 H 0.06 0.46 7.44 -51.93 -0.39 0.08 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.10 1.75 7.40 -51.92 -0.38 1.37 16 47 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -33.11 398.18 -9.82 -42.93 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.40 Total: -1.32 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 0.20 Total: -5.57 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: -1.03 Total: -39.98 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.98 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.11 -9.82 -42.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.100 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds